Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46990 * 299.99698 * 3 2 1 6 6 H 1.48500 * 109.47436 * 59.99895 * 3 2 1 7 7 C 1.38954 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99862 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00485 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47782 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00294 * 180.02562 * 13 12 10 15 15 O 1.21587 * 119.99782 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99699 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99722 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43454 * 32.45932 * 17 16 14 19 19 C 1.54893 * 110.48347 * 269.77569 * 17 16 14 20 20 C 1.54966 * 102.77317 * 203.40412 * 19 17 16 21 21 C 1.54266 * 104.16247 * 37.88972 * 20 19 17 22 22 O 1.42898 * 110.03056 * 95.75103 * 21 20 19 23 23 C 1.52997 * 110.03201 * 217.13569 * 21 20 19 24 24 F 1.39905 * 109.47157 * 297.90522 * 23 21 20 25 25 F 1.39900 * 109.47010 * 177.90913 * 23 21 20 26 26 F 1.39897 * 109.47422 * 57.90604 * 23 21 20 27 27 C 1.53877 * 106.63754 * 336.44543 * 21 20 19 28 28 H 0.96993 * 120.00165 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00340 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47212 * 59.99666 * 12 10 9 31 31 H 1.09002 * 109.47120 * 300.00710 * 12 10 9 32 32 H 0.96994 * 119.99746 * 359.97438 * 13 12 10 33 33 H 0.96994 * 120.00340 * 359.97438 * 16 14 13 34 34 H 1.09000 * 110.75640 * 321.69183 * 19 17 16 35 35 H 1.08997 * 110.75650 * 85.06747 * 19 17 16 36 36 H 1.09003 * 110.47521 * 279.23233 * 20 19 17 37 37 H 1.09000 * 110.52632 * 156.56967 * 20 19 17 38 38 H 0.96703 * 114.00157 * 62.09220 * 22 21 20 39 39 H 1.08995 * 110.03307 * 119.25950 * 27 21 20 40 40 H 1.09003 * 110.02851 * 240.69130 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9765 0.0007 14 6 1.7466 -7.2472 -0.0002 15 8 0.5512 -7.4693 -0.0011 16 7 2.6225 -8.2715 0.0000 17 6 2.1342 -9.6528 -0.0004 18 1 1.1950 -9.7242 -0.5489 19 6 1.9584 -10.1659 1.4504 20 6 2.0508 -11.7038 1.2835 21 6 3.1358 -11.9018 0.2050 22 8 4.4013 -12.1450 0.8226 23 6 2.7630 -13.0743 -0.7044 24 9 2.7024 -14.2500 0.0516 25 9 3.7298 -13.2134 -1.7061 26 9 1.5160 -12.8319 -1.2903 27 6 3.1893 -10.5982 -0.6108 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0002 30 1 0.6176 -4.9205 -0.8902 31 1 0.6168 -4.9209 0.8896 32 1 3.1495 -5.7992 0.0011 33 1 3.5761 -8.0942 0.0003 34 1 2.7609 -9.7985 2.0901 35 1 0.9846 -9.8781 1.8466 36 1 1.0972 -12.1085 0.9442 37 1 2.3537 -12.1724 2.2199 38 1 4.4286 -12.9481 1.3605 39 1 4.1802 -10.1506 -0.5350 40 1 2.9496 -10.8009 -1.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589931167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = -274.289641 kcal Electronic energy + Delta-G solvation = -29382.301569 eV Core-core repulsion = 24395.807858 eV Total energy + Delta-G solvation = -4986.493712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.60670 -48.12589 -48.04096 -40.36334 -39.27127 -38.17547 -36.11777 -34.41939 -33.70417 -33.25975 -31.38096 -29.79408 -28.93460 -27.19284 -25.03408 -24.34918 -21.77135 -21.10362 -20.75893 -19.62097 -19.25347 -18.78138 -18.76967 -18.40513 -17.95043 -16.95615 -16.41182 -15.61469 -15.55772 -15.35150 -14.91548 -14.89084 -14.80042 -14.52632 -14.49601 -14.35364 -14.22304 -14.17484 -14.03102 -13.91943 -13.59781 -13.40176 -13.20178 -12.48103 -12.34928 -12.19613 -12.14649 -11.79907 -11.68172 -11.63948 -11.16326 -11.13666 -10.82976 -10.41616 -10.33654 -10.08724 -9.65457 -9.23974 -8.66627 -8.63676 -8.10813 -6.52207 -3.94199 2.11921 2.63775 3.09377 3.10061 3.16420 3.22107 3.28546 3.28864 3.40687 3.69898 3.74143 3.96054 4.06469 4.08981 4.40949 4.65921 4.72627 4.75881 4.85891 4.88863 4.98498 5.16566 5.20049 5.38777 5.41605 5.75173 5.80227 5.92103 5.99015 6.07035 6.43211 6.70623 6.71741 7.03097 7.45594 7.91919 8.18111 8.44316 8.73918 9.04083 9.38826 9.86552 10.64747 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.001795 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.067145 B =15599.360679 C =15785.863720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.706 3.294 15 O -0.596 6.596 16 N -0.742 5.742 17 C 0.166 3.834 18 H 0.105 0.895 19 C -0.130 4.130 20 C -0.148 4.148 21 C 0.098 3.902 22 O -0.524 6.524 23 C 0.424 3.576 24 F -0.184 7.184 25 F -0.176 7.176 26 F -0.174 7.174 27 C -0.121 4.121 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.387 0.613 39 H 0.105 0.895 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -26.668 1.546 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.406 3.594 15 O -0.475 6.475 16 N -0.397 5.397 17 C 0.059 3.941 18 H 0.123 0.877 19 C -0.169 4.169 20 C -0.186 4.186 21 C 0.055 3.945 22 O -0.331 6.331 23 C 0.370 3.630 24 F -0.165 7.165 25 F -0.157 7.157 26 F -0.155 7.155 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.233 0.767 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.237 0.763 39 H 0.123 0.877 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.050 -26.121 1.206 26.460 hybrid contribution 0.466 0.150 0.078 0.495 sum 4.516 -25.970 1.284 26.391 Atomic orbital electron populations 1.69619 1.06006 1.28428 1.49394 1.25333 0.95676 0.99952 0.96830 0.85755 0.79671 0.80821 0.77822 1.19143 1.20617 1.20625 1.19775 0.93475 0.81978 1.48137 0.87630 1.41796 1.09506 1.04469 1.62650 1.19764 0.88297 0.85020 0.85517 1.90494 1.13753 1.86866 1.57362 1.20789 0.91197 0.84833 1.03178 1.44775 1.11308 1.03305 1.78644 1.15836 0.85196 0.80571 0.77831 1.90909 1.13971 1.84219 1.58364 1.45043 1.09129 1.04443 1.81127 1.21532 0.97231 0.79375 0.95933 0.87660 1.22925 1.03951 0.92446 0.97527 1.23101 0.98154 0.99211 0.98113 1.22997 0.87171 0.91702 0.92658 1.86722 1.30070 1.48766 1.67527 1.21570 0.75207 0.85083 0.81171 1.93178 1.96162 1.51427 1.75781 1.93215 1.63273 1.96233 1.62979 1.93212 1.42840 1.94176 1.85281 1.22453 1.02526 0.91893 0.99069 0.91634 0.77011 0.89971 0.89981 0.75545 0.76699 0.90046 0.89575 0.89211 0.89030 0.76347 0.87698 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.68 7.85 -10.99 -0.09 9.59 16 11 O -0.60 -15.07 15.24 5.54 0.08 -14.99 16 12 C 0.13 2.33 6.15 -5.20 -0.03 2.30 16 13 N -0.72 -11.66 5.53 -66.42 -0.37 -12.03 16 14 C 0.71 10.75 8.56 -86.92 -0.74 10.01 16 15 O -0.60 -10.98 15.99 5.29 0.08 -10.89 16 16 N -0.74 -8.04 5.16 -57.05 -0.29 -8.33 16 17 C 0.17 1.53 3.22 -66.27 -0.21 1.32 16 18 H 0.11 1.14 7.55 -51.93 -0.39 0.75 16 19 C -0.13 -1.04 6.58 -24.69 -0.16 -1.21 16 20 C -0.15 -0.89 5.84 -25.03 -0.15 -1.03 16 21 C 0.10 0.66 0.82 -89.50 -0.07 0.58 16 22 O -0.52 -3.26 12.86 -35.23 -0.45 -3.71 16 23 C 0.42 3.25 2.20 37.16 0.08 3.33 16 24 F -0.18 -1.35 16.73 2.25 0.04 -1.31 16 25 F -0.18 -1.57 16.89 2.25 0.04 -1.54 16 26 F -0.17 -1.49 16.07 2.25 0.04 -1.45 16 27 C -0.12 -0.90 5.63 -25.61 -0.14 -1.05 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 29 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.38 7.45 -40.82 -0.30 6.07 16 33 H 0.40 3.46 8.38 -40.82 -0.34 3.12 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.53 7.27 -51.93 -0.38 0.16 16 37 H 0.09 0.40 8.05 -51.93 -0.42 -0.02 16 38 H 0.39 1.07 8.70 45.56 0.40 1.46 16 39 H 0.10 0.74 7.54 -51.93 -0.39 0.35 16 40 H 0.09 0.68 7.32 -51.93 -0.38 0.30 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -32.47 353.94 -5.35 -37.82 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -3.73 Total: 16.22 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: -1.76 Total: 16.06 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.00 Total: -56.92 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.28 Total: -29.59 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.11 Total: -4.30 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.47 -5.35 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.472 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds