Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46990 * 299.99698 * 3 2 1 6 6 H 1.48500 * 109.47436 * 59.99895 * 3 2 1 7 7 C 1.38954 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99862 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00485 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47782 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00294 * 180.02562 * 13 12 10 15 15 O 1.21587 * 119.99782 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99699 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99722 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43454 * 32.45932 * 17 16 14 19 19 C 1.54893 * 110.48347 * 269.77569 * 17 16 14 20 20 C 1.54966 * 102.77317 * 203.40412 * 19 17 16 21 21 C 1.54266 * 104.16247 * 37.88972 * 20 19 17 22 22 O 1.42898 * 110.03056 * 95.75103 * 21 20 19 23 23 C 1.52997 * 110.03201 * 217.13569 * 21 20 19 24 24 F 1.39905 * 109.47157 * 297.90522 * 23 21 20 25 25 F 1.39900 * 109.47010 * 177.90913 * 23 21 20 26 26 F 1.39897 * 109.47422 * 57.90604 * 23 21 20 27 27 C 1.53877 * 106.63754 * 336.44543 * 21 20 19 28 28 H 0.96993 * 120.00165 * 0.02562 * 1 2 3 29 29 H 0.96992 * 120.00340 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47212 * 59.99666 * 12 10 9 31 31 H 1.09002 * 109.47120 * 300.00710 * 12 10 9 32 32 H 0.96994 * 119.99746 * 359.97438 * 13 12 10 33 33 H 0.96994 * 120.00340 * 359.97438 * 16 14 13 34 34 H 1.09000 * 110.75640 * 321.69183 * 19 17 16 35 35 H 1.08997 * 110.75650 * 85.06747 * 19 17 16 36 36 H 1.09003 * 110.47521 * 279.23233 * 20 19 17 37 37 H 1.09000 * 110.52632 * 156.56967 * 20 19 17 38 38 H 0.96703 * 114.00157 * 62.09220 * 22 21 20 39 39 H 1.08995 * 110.03307 * 119.25950 * 27 21 20 40 40 H 1.09003 * 110.02851 * 240.69130 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9765 0.0007 14 6 1.7466 -7.2472 -0.0002 15 8 0.5512 -7.4693 -0.0011 16 7 2.6225 -8.2715 0.0000 17 6 2.1342 -9.6528 -0.0004 18 1 1.1950 -9.7242 -0.5489 19 6 1.9584 -10.1659 1.4504 20 6 2.0508 -11.7038 1.2835 21 6 3.1358 -11.9018 0.2050 22 8 4.4013 -12.1450 0.8226 23 6 2.7630 -13.0743 -0.7044 24 9 2.7024 -14.2500 0.0516 25 9 3.7298 -13.2134 -1.7061 26 9 1.5160 -12.8319 -1.2903 27 6 3.1893 -10.5982 -0.6108 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0002 30 1 0.6176 -4.9205 -0.8902 31 1 0.6168 -4.9209 0.8896 32 1 3.1495 -5.7992 0.0011 33 1 3.5761 -8.0942 0.0003 34 1 2.7609 -9.7985 2.0901 35 1 0.9846 -9.8781 1.8466 36 1 1.0972 -12.1085 0.9442 37 1 2.3537 -12.1724 2.2199 38 1 4.4286 -12.9481 1.3605 39 1 4.1802 -10.1506 -0.5350 40 1 2.9496 -10.8009 -1.6547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589931167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = -301.107680 kcal Electronic energy + Delta-G solvation = -29383.464487 eV Core-core repulsion = 24395.807858 eV Total energy + Delta-G solvation = -4987.656629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.22369 -48.72806 -48.68784 -41.39516 -40.34996 -39.71025 -36.86421 -36.19255 -35.24355 -34.16476 -33.34318 -30.38780 -29.91401 -28.51059 -26.38673 -25.48934 -22.60224 -21.83009 -21.71175 -21.32921 -20.14524 -19.86110 -19.62454 -19.37593 -19.20893 -17.76678 -17.44631 -17.09285 -16.76002 -16.62620 -16.27423 -15.88216 -15.61667 -15.51761 -15.45083 -15.38257 -15.12542 -15.08727 -14.93546 -14.84617 -14.79587 -14.16148 -13.92894 -13.78961 -13.66298 -13.53876 -13.07350 -12.91326 -12.89016 -12.68511 -12.43336 -12.27127 -12.10480 -11.79256 -11.56689 -11.40103 -11.35351 -10.53894 -10.39608 -10.08911 -9.82642 -8.50007 -5.99972 1.36097 1.43289 1.50585 1.56364 1.61317 1.91341 2.11539 2.29200 2.57257 2.57878 2.77388 3.01293 3.16754 3.17403 3.35028 3.40943 3.49351 4.03542 4.09743 4.15305 4.22112 4.26282 4.37248 4.46523 4.49113 4.66953 4.77848 4.86945 5.09064 5.11893 5.33266 5.40379 5.53043 5.92708 5.97052 6.41419 6.49547 7.03829 7.05028 7.44482 7.54957 7.96212 8.67137 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.001795 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.067145 B =15599.360679 C =15785.863720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.724 5.724 17 C 0.160 3.840 18 H 0.088 0.912 19 C -0.126 4.126 20 C -0.141 4.141 21 C 0.108 3.892 22 O -0.530 6.530 23 C 0.424 3.576 24 F -0.181 7.181 25 F -0.184 7.184 26 F -0.181 7.181 27 C -0.118 4.118 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.403 0.597 39 H 0.112 0.888 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -27.494 2.000 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.510 6.510 16 N -0.380 5.380 17 C 0.055 3.945 18 H 0.107 0.893 19 C -0.165 4.165 20 C -0.179 4.179 21 C 0.064 3.936 22 O -0.340 6.340 23 C 0.369 3.631 24 F -0.162 7.162 25 F -0.166 7.166 26 F -0.162 7.162 27 C -0.156 4.156 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.255 0.745 39 H 0.131 0.869 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.750 -27.003 1.668 27.468 hybrid contribution 0.279 0.292 -0.063 0.409 sum 5.029 -26.711 1.605 27.227 Atomic orbital electron populations 1.69682 1.06987 1.29541 1.49437 1.26131 0.96548 1.02694 0.95893 0.84811 0.78138 0.76763 0.78259 1.19417 1.19707 1.19684 1.19764 0.92942 0.83527 1.50204 0.89567 1.41846 1.09615 1.04615 1.63522 1.20442 0.88120 0.85931 0.83394 1.90471 1.15187 1.87574 1.57971 1.20575 0.90986 0.83013 1.04081 1.44689 1.11028 1.03276 1.79155 1.15914 0.85165 0.80736 0.77555 1.90889 1.15554 1.84621 1.59901 1.44947 1.09295 1.04192 1.79589 1.21650 0.97208 0.78654 0.97014 0.89348 1.22850 1.03315 0.93971 0.96372 1.23092 0.98135 0.97643 0.98984 1.22829 0.87643 0.90701 0.92444 1.86696 1.29568 1.49920 1.67770 1.21740 0.74751 0.85513 0.81068 1.93184 1.96118 1.51343 1.75584 1.93198 1.63583 1.96309 1.63470 1.93200 1.43318 1.94238 1.85470 1.22389 1.02118 0.91942 0.99149 0.91102 0.76689 0.89056 0.88976 0.75197 0.75196 0.89690 0.90898 0.89093 0.86778 0.74485 0.86946 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 13.05 21.66 0.28 -48.15 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 1.00 41.52 29.55 68.60 2.03 43.54 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -18.31 9.68 84.04 0.81 -17.49 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.85 5.29 -306.99 -1.62 -29.47 16 10 C 0.43 19.70 7.85 87.66 0.69 20.38 16 11 O -0.62 -31.66 15.24 -3.08 -0.05 -31.71 16 12 C 0.14 5.09 6.15 85.63 0.53 5.62 16 13 N -0.72 -22.83 5.53 -482.31 -2.67 -25.50 16 14 C 0.71 21.00 8.56 179.05 1.53 22.53 16 15 O -0.63 -22.92 15.99 -3.99 -0.06 -22.98 16 16 N -0.72 -14.90 5.16 -452.68 -2.34 -17.24 16 17 C 0.16 2.81 3.22 46.06 0.15 2.96 16 18 H 0.09 1.90 7.55 -2.39 -0.02 1.88 16 19 C -0.13 -1.86 6.58 31.91 0.21 -1.65 16 20 C -0.14 -1.40 5.84 31.70 0.18 -1.21 16 21 C 0.11 1.22 0.82 -10.07 -0.01 1.22 16 22 O -0.53 -5.24 12.86 -148.98 -1.92 -7.15 16 23 C 0.42 5.84 2.20 71.98 0.16 5.99 16 24 F -0.18 -2.31 16.73 44.97 0.75 -1.56 16 25 F -0.18 -3.06 16.89 44.97 0.76 -2.30 16 26 F -0.18 -2.91 16.07 44.97 0.72 -2.19 16 27 C -0.12 -1.57 5.63 31.32 0.18 -1.40 16 28 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 30 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.41 12.55 7.45 -92.71 -0.69 11.86 16 33 H 0.41 6.48 8.38 -92.71 -0.78 5.71 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 0.92 7.27 -2.39 -0.02 0.91 16 37 H 0.11 0.65 8.05 -2.39 -0.02 0.63 16 38 H 0.40 1.08 8.70 -74.06 -0.64 0.44 16 39 H 0.11 1.35 7.54 -2.39 -0.02 1.33 16 40 H 0.09 1.25 7.32 -2.39 -0.02 1.24 16 Total: -1.00 -68.90 353.94 -0.89 -69.79 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -1.68 Total: 38.13 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 4.90 Total: 36.79 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.35 Total: -120.36 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -2.03 Total: -61.84 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 2.23 Total: -6.05 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.90 -0.89 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.313 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds