Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99977 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99760 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00155 * 3 2 1 7 7 C 1.38947 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09007 * 110.01497 * 326.39262 * 17 16 14 19 19 C 1.54262 * 110.03365 * 87.83280 * 17 16 14 20 20 C 1.54888 * 104.19271 * 95.67629 * 19 17 16 21 21 C 1.54888 * 102.74834 * 37.94603 * 20 19 17 22 22 O 1.42907 * 110.48564 * 80.73509 * 21 20 19 23 23 C 1.52999 * 110.59845 * 203.32019 * 21 20 19 24 24 F 1.39901 * 109.47041 * 174.83998 * 23 21 20 25 25 F 1.39899 * 109.47114 * 294.84096 * 23 21 20 26 26 F 1.39896 * 109.47002 * 54.83806 * 23 21 20 27 27 C 1.53875 * 110.03634 * 205.00443 * 17 16 14 28 28 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 31 31 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 33 33 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 34 34 H 1.08999 * 110.48833 * 214.35628 * 19 17 16 35 35 H 1.09000 * 110.48693 * 337.00113 * 19 17 16 36 36 H 1.08995 * 110.76047 * 279.62743 * 20 19 17 37 37 H 1.09001 * 110.91118 * 156.32999 * 20 19 17 38 38 H 0.96694 * 114.00047 * 65.22505 * 22 21 20 39 39 H 1.09007 * 110.02907 * 359.97438 * 27 17 16 40 40 H 1.09001 * 110.03166 * 121.37970 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0016 14 6 1.7464 -7.2471 -0.0017 15 8 0.5510 -7.4693 -0.0018 16 7 2.6222 -8.2715 0.0035 17 6 2.1339 -9.6527 0.0095 18 1 1.2050 -9.7176 0.5762 19 6 1.9069 -10.1393 -1.4367 20 6 3.2142 -10.8889 -1.7947 21 6 3.5728 -11.6033 -0.4681 22 8 2.8074 -12.8013 -0.3224 23 6 5.0695 -11.9157 -0.4125 24 9 5.3877 -12.4523 0.8398 25 9 5.3902 -12.8410 -1.4115 26 9 5.7992 -10.7394 -0.6148 27 6 3.1930 -10.5837 0.6254 28 1 -0.4849 0.8401 -0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6173 -4.9205 -0.8913 31 1 0.6167 -4.9208 0.8886 32 1 3.1494 -5.7992 -0.0012 33 1 3.5759 -8.0943 0.0033 34 1 1.0541 -10.8165 -1.4820 35 1 1.7579 -9.2915 -2.1055 36 1 3.9972 -10.1860 -2.0789 37 1 3.0413 -11.6144 -2.5897 38 1 3.0056 -13.4777 -0.9844 39 1 4.0706 -10.0078 0.9194 40 1 2.7781 -11.1003 1.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589931168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -272.833137 kcal Electronic energy + Delta-G solvation = -29582.653319 eV Core-core repulsion = 24596.222765 eV Total energy + Delta-G solvation = -4986.430553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.60761 -48.13983 -48.05085 -40.42588 -39.23201 -38.16205 -36.07550 -34.41550 -33.68295 -33.05778 -31.37836 -29.83294 -29.02455 -27.23322 -25.08095 -24.39028 -21.81177 -21.12187 -20.47447 -19.59908 -19.29461 -18.81789 -18.69942 -18.43410 -17.95419 -16.83090 -16.50886 -15.76859 -15.58540 -15.36090 -14.92096 -14.88916 -14.75620 -14.61306 -14.51619 -14.27011 -14.23025 -14.16029 -14.00297 -13.84250 -13.65171 -13.39536 -12.97609 -12.78967 -12.31193 -12.19149 -11.86115 -11.83003 -11.63743 -11.51196 -11.33371 -11.13001 -10.80179 -10.46619 -10.32861 -10.06719 -9.64236 -9.24055 -8.66083 -8.63497 -8.10677 -6.52047 -3.94087 2.10514 2.72414 3.05238 3.11163 3.16376 3.21738 3.27031 3.28089 3.39903 3.66314 3.74359 3.99254 4.06677 4.09449 4.41035 4.63496 4.74598 4.82127 4.86134 4.88989 5.04391 5.16704 5.19953 5.42741 5.53614 5.73869 5.80808 5.91494 5.99257 6.07214 6.46775 6.71585 6.72264 7.03000 7.45455 7.91762 8.18638 8.44491 8.74828 9.04097 9.38879 9.86703 10.64836 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.001960 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.356558 B =14285.906253 C =14895.638365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.595 6.595 16 N -0.745 5.745 17 C 0.168 3.832 18 H 0.104 0.896 19 C -0.125 4.125 20 C -0.148 4.148 21 C 0.092 3.908 22 O -0.521 6.521 23 C 0.427 3.573 24 F -0.176 7.176 25 F -0.184 7.184 26 F -0.175 7.175 27 C -0.119 4.119 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.387 0.613 39 H 0.096 0.904 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 -25.592 -2.268 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.474 6.474 16 N -0.401 5.401 17 C 0.062 3.938 18 H 0.122 0.878 19 C -0.164 4.164 20 C -0.186 4.186 21 C 0.048 3.952 22 O -0.327 6.327 23 C 0.372 3.628 24 F -0.157 7.157 25 F -0.165 7.165 26 F -0.156 7.156 27 C -0.157 4.157 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.244 0.756 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.236 0.764 39 H 0.115 0.885 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.400 -25.258 -1.745 25.887 hybrid contribution 1.321 0.588 -0.506 1.532 sum 6.721 -24.670 -2.251 25.668 Atomic orbital electron populations 1.69616 1.06004 1.28524 1.49321 1.25327 0.95671 0.99936 0.96808 0.85813 0.79225 0.80505 0.78483 1.20271 1.20799 1.19329 1.19721 0.93446 0.82001 1.48257 0.87696 1.41791 1.09501 1.04460 1.62644 1.19768 0.88297 0.85021 0.85529 1.90493 1.13754 1.86865 1.57377 1.20788 0.91199 0.84842 1.03162 1.44789 1.11284 1.03337 1.78678 1.15844 0.85218 0.80557 0.77868 1.90914 1.13959 1.84228 1.58314 1.45246 1.09029 1.04659 1.81207 1.21238 0.97278 0.79167 0.96144 0.87827 1.22762 0.96403 1.00512 0.96739 1.23255 1.00356 1.00419 0.94581 1.23254 0.83370 0.88302 1.00275 1.86697 1.62546 1.25550 1.57905 1.21489 0.92762 0.74673 0.73864 1.93218 1.94272 1.86438 1.41785 1.93177 1.94302 1.67246 1.61799 1.93201 1.80056 1.47645 1.94708 1.22533 1.00975 0.94821 0.97342 0.91584 0.77007 0.89999 0.89982 0.75574 0.76932 0.89717 0.89762 0.89084 0.89466 0.76369 0.88550 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 13.05 55.50 0.72 -23.03 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 10 C 0.43 9.67 7.85 -10.99 -0.09 9.59 16 11 O -0.60 -15.07 15.24 5.54 0.08 -14.99 16 12 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 13 N -0.72 -11.64 5.53 -66.41 -0.37 -12.01 16 14 C 0.71 10.68 8.56 -86.92 -0.74 9.94 16 15 O -0.60 -10.95 16.00 5.28 0.08 -10.86 16 16 N -0.74 -7.98 5.03 -57.58 -0.29 -8.27 16 17 C 0.17 1.54 3.25 -66.81 -0.22 1.33 16 18 H 0.10 1.13 7.56 -51.92 -0.39 0.73 16 19 C -0.13 -1.02 6.52 -25.07 -0.16 -1.19 16 20 C -0.15 -0.93 5.90 -24.74 -0.15 -1.07 16 21 C 0.09 0.61 0.71 -88.97 -0.06 0.54 16 22 O -0.52 -3.24 13.04 -35.23 -0.46 -3.70 16 23 C 0.43 3.24 2.40 37.16 0.09 3.33 16 24 F -0.18 -1.56 17.06 2.25 0.04 -1.52 16 25 F -0.18 -1.37 16.76 2.25 0.04 -1.33 16 26 F -0.17 -1.45 15.80 2.25 0.04 -1.42 16 27 C -0.12 -0.86 5.61 -25.62 -0.14 -1.01 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 6.37 7.45 -40.82 -0.30 6.07 16 33 H 0.40 3.45 8.33 -40.82 -0.34 3.11 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 36 H 0.09 0.58 7.36 -51.93 -0.38 0.20 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.39 1.09 8.66 45.56 0.39 1.48 16 39 H 0.10 0.65 6.83 -51.93 -0.35 0.29 16 40 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -32.33 354.05 -5.34 -37.68 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -3.74 Total: 16.30 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: -1.75 Total: 15.95 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.01 Total: -56.85 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.29 Total: -29.55 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.33 -5.34 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.156 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds