Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99977 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99760 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00155 * 3 2 1 7 7 C 1.38947 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09007 * 110.01497 * 326.39262 * 17 16 14 19 19 C 1.54262 * 110.03365 * 87.83280 * 17 16 14 20 20 C 1.54888 * 104.19271 * 95.67629 * 19 17 16 21 21 C 1.54888 * 102.74834 * 37.94603 * 20 19 17 22 22 O 1.42907 * 110.48564 * 80.73509 * 21 20 19 23 23 C 1.52999 * 110.59845 * 203.32019 * 21 20 19 24 24 F 1.39901 * 109.47041 * 174.83998 * 23 21 20 25 25 F 1.39899 * 109.47114 * 294.84096 * 23 21 20 26 26 F 1.39896 * 109.47002 * 54.83806 * 23 21 20 27 27 C 1.53875 * 110.03634 * 205.00443 * 17 16 14 28 28 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 31 31 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 33 33 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 34 34 H 1.08999 * 110.48833 * 214.35628 * 19 17 16 35 35 H 1.09000 * 110.48693 * 337.00113 * 19 17 16 36 36 H 1.08995 * 110.76047 * 279.62743 * 20 19 17 37 37 H 1.09001 * 110.91118 * 156.32999 * 20 19 17 38 38 H 0.96694 * 114.00047 * 65.22505 * 22 21 20 39 39 H 1.09007 * 110.02907 * 359.97438 * 27 17 16 40 40 H 1.09001 * 110.03166 * 121.37970 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0016 14 6 1.7464 -7.2471 -0.0017 15 8 0.5510 -7.4693 -0.0018 16 7 2.6222 -8.2715 0.0035 17 6 2.1339 -9.6527 0.0095 18 1 1.2050 -9.7176 0.5762 19 6 1.9069 -10.1393 -1.4367 20 6 3.2142 -10.8889 -1.7947 21 6 3.5728 -11.6033 -0.4681 22 8 2.8074 -12.8013 -0.3224 23 6 5.0695 -11.9157 -0.4125 24 9 5.3877 -12.4523 0.8398 25 9 5.3902 -12.8410 -1.4115 26 9 5.7992 -10.7394 -0.6148 27 6 3.1930 -10.5837 0.6254 28 1 -0.4849 0.8401 -0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6173 -4.9205 -0.8913 31 1 0.6167 -4.9208 0.8886 32 1 3.1494 -5.7992 -0.0012 33 1 3.5759 -8.0943 0.0033 34 1 1.0541 -10.8165 -1.4820 35 1 1.7579 -9.2915 -2.1055 36 1 3.9972 -10.1860 -2.0789 37 1 3.0413 -11.6144 -2.5897 38 1 3.0056 -13.4777 -0.9844 39 1 4.0706 -10.0078 0.9194 40 1 2.7781 -11.1003 1.4909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589931168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -299.480601 kcal Electronic energy + Delta-G solvation = -29583.808839 eV Core-core repulsion = 24596.222765 eV Total energy + Delta-G solvation = -4987.586074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.21469 -48.73494 -48.68300 -41.43896 -40.35875 -39.67578 -36.83104 -36.18863 -35.23529 -33.95295 -33.33586 -30.44433 -29.94505 -28.59273 -26.38355 -25.57279 -22.69929 -21.81982 -21.46072 -21.28890 -20.11243 -19.85962 -19.61850 -19.37039 -19.25000 -17.63931 -17.45712 -17.20165 -16.76368 -16.59140 -16.38065 -15.94453 -15.63298 -15.52937 -15.43533 -15.39053 -15.16184 -15.11837 -14.86619 -14.85228 -14.62245 -14.16418 -13.92499 -13.70965 -13.53444 -13.51569 -13.43230 -12.92732 -12.81985 -12.44500 -12.42543 -12.12407 -12.11518 -12.00182 -11.55681 -11.38025 -11.32390 -10.53743 -10.39731 -10.08908 -9.82472 -8.49876 -5.99905 1.37379 1.43027 1.48360 1.55914 1.65506 1.91644 2.12738 2.29480 2.55938 2.58386 2.75989 3.04571 3.11744 3.17564 3.34018 3.41735 3.51798 4.02271 4.11438 4.19481 4.23584 4.27562 4.42012 4.46457 4.49460 4.66737 4.82373 4.92251 5.05071 5.13473 5.33661 5.40221 5.57298 5.92453 5.96661 6.41712 6.49666 7.04021 7.04985 7.44630 7.55822 7.96324 8.67046 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.001960 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.356558 B =14285.906253 C =14895.638365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.727 5.727 17 C 0.164 3.836 18 H 0.086 0.914 19 C -0.122 4.122 20 C -0.142 4.142 21 C 0.101 3.899 22 O -0.528 6.528 23 C 0.427 3.573 24 F -0.184 7.184 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.116 4.116 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.410 0.590 33 H 0.409 0.591 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.402 0.598 39 H 0.103 0.897 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 -26.455 -2.597 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.509 6.509 16 N -0.383 5.383 17 C 0.059 3.941 18 H 0.105 0.895 19 C -0.161 4.161 20 C -0.179 4.179 21 C 0.058 3.942 22 O -0.337 6.337 23 C 0.373 3.627 24 F -0.165 7.165 25 F -0.163 7.163 26 F -0.161 7.161 27 C -0.154 4.154 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.254 0.746 39 H 0.122 0.878 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.967 -26.176 -2.084 26.928 hybrid contribution 1.164 0.735 -0.405 1.435 sum 7.132 -25.441 -2.489 26.538 Atomic orbital electron populations 1.69682 1.06987 1.29597 1.49377 1.26123 0.96537 1.02671 0.95865 0.84875 0.77911 0.76546 0.78697 1.19564 1.19718 1.19463 1.19724 0.92942 0.83549 1.50309 0.89584 1.41843 1.09609 1.04608 1.63523 1.20448 0.88122 0.85931 0.83400 1.90470 1.15187 1.87572 1.57979 1.20574 0.90986 0.83022 1.04063 1.44706 1.10996 1.03319 1.79194 1.15916 0.85177 0.80706 0.77568 1.90894 1.15542 1.84625 1.59862 1.45149 1.09162 1.04387 1.79648 1.21351 0.97275 0.78446 0.97023 0.89542 1.22684 0.97769 1.00216 0.95444 1.23236 0.99095 1.00624 0.94954 1.23085 0.82726 0.88434 1.00004 1.86677 1.62353 1.25809 1.58850 1.21611 0.93059 0.74486 0.73556 1.93204 1.94376 1.86563 1.42394 1.93181 1.94335 1.67167 1.61641 1.93193 1.80268 1.47915 1.94706 1.22484 1.00573 0.94717 0.97602 0.91096 0.76687 0.89000 0.89062 0.75245 0.75491 0.89254 0.91343 0.89002 0.87477 0.74560 0.87841 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -18.36 9.68 84.04 0.81 -17.54 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.56 -27.85 5.29 -306.98 -1.62 -29.47 16 10 C 0.43 19.69 7.85 87.66 0.69 20.38 16 11 O -0.62 -31.66 15.24 -3.08 -0.05 -31.70 16 12 C 0.14 5.09 6.15 85.63 0.53 5.62 16 13 N -0.72 -22.82 5.53 -482.29 -2.67 -25.49 16 14 C 0.71 20.89 8.56 179.06 1.53 22.43 16 15 O -0.63 -22.84 16.00 -4.01 -0.06 -22.91 16 16 N -0.73 -14.84 5.03 -454.34 -2.29 -17.12 16 17 C 0.16 2.85 3.25 45.71 0.15 3.00 16 18 H 0.09 1.85 7.56 -2.38 -0.02 1.83 16 19 C -0.12 -1.84 6.52 31.67 0.21 -1.64 16 20 C -0.14 -1.46 5.90 31.88 0.19 -1.27 16 21 C 0.10 1.14 0.71 -9.72 -0.01 1.13 16 22 O -0.53 -5.40 13.04 -148.98 -1.94 -7.34 16 23 C 0.43 5.68 2.40 71.98 0.17 5.85 16 24 F -0.18 -2.97 17.06 44.97 0.77 -2.20 16 25 F -0.18 -2.33 16.76 44.97 0.75 -1.57 16 26 F -0.18 -2.67 15.80 44.97 0.71 -1.96 16 27 C -0.12 -1.50 5.61 31.32 0.18 -1.33 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 30 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.41 12.56 7.45 -92.71 -0.69 11.87 16 33 H 0.41 6.51 8.33 -92.71 -0.77 5.73 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 36 H 0.09 0.98 7.36 -2.39 -0.02 0.96 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.40 1.25 8.66 -74.06 -0.64 0.61 16 39 H 0.10 1.20 6.83 -2.38 -0.02 1.19 16 40 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 Total: -1.00 -68.54 354.05 -0.85 -69.40 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -1.68 Total: 38.50 kcal Atomic # 6 Polarization: 31.59 SS G_CDS: 4.91 Total: 36.50 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.30 Total: -120.26 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -2.05 Total: -61.95 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 2.23 Total: -5.73 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.54 -0.85 -69.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.082 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds