Wall clock time and date at job start Tue Mar 31 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48506 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47204 * 300.00097 * 3 2 1 6 6 H 1.48501 * 109.46960 * 60.00574 * 3 2 1 7 7 C 1.37881 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99921 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.87625 * 62.39548 * 9 7 2 11 11 C 1.55138 * 110.99315 * 298.54825 * 9 7 2 12 12 C 1.54319 * 103.02067 * 206.25484 * 11 9 7 13 13 N 1.47437 * 107.23358 * 22.28690 * 12 11 9 14 14 C 1.46896 * 111.00371 * 123.25945 * 13 12 11 15 15 C 1.50696 * 109.47449 * 69.87080 * 14 13 12 16 16 O 1.21234 * 119.99795 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00141 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99906 * 180.02562 * 17 15 14 19 19 O 1.21543 * 119.99987 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99902 * 179.97438 * 18 17 15 21 21 C 1.46506 * 119.99873 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46684 * 180.02562 * 21 20 18 23 23 F 1.39897 * 109.47114 * 60.00538 * 22 21 20 24 24 F 1.39905 * 109.46699 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47493 * 299.99924 * 22 21 20 26 26 C 1.47841 * 108.56635 * 0.98683 * 13 12 11 27 27 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96694 * 113.99978 * 297.60842 * 10 9 7 29 29 H 1.09004 * 110.70692 * 87.87470 * 11 9 7 30 30 H 1.08993 * 110.85727 * 324.71217 * 11 9 7 31 31 H 1.09008 * 109.88832 * 262.87741 * 12 11 9 32 32 H 1.08999 * 109.88887 * 141.69460 * 12 11 9 33 33 H 1.09004 * 109.46736 * 309.87212 * 14 13 12 34 34 H 1.09000 * 109.47357 * 189.87247 * 14 13 12 35 35 H 0.96999 * 120.00043 * 359.97438 * 17 15 14 36 36 H 0.96995 * 120.00018 * 0.27633 * 20 18 17 37 37 H 1.09000 * 109.47212 * 300.00355 * 21 20 18 38 38 H 1.09001 * 109.46577 * 60.00430 * 21 20 18 39 39 H 1.09000 * 110.37350 * 94.73598 * 26 13 12 40 40 H 1.09009 * 110.37362 * 217.07591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6346 1.2721 12 6 0.2539 -4.1627 1.4504 13 7 1.3920 -4.7761 0.7417 14 6 2.1863 -5.6156 1.6485 15 6 1.3956 -6.8444 2.0172 16 8 0.2809 -7.0051 1.5685 17 7 1.9278 -7.7647 2.8457 18 6 1.2208 -8.8639 3.1750 19 8 0.1032 -9.0250 2.7251 20 7 1.7531 -9.7844 4.0030 21 6 0.9844 -10.9790 4.3614 22 6 1.8115 -11.8531 5.3063 23 9 2.1157 -11.1295 6.4644 24 9 1.0777 -12.9941 5.6481 25 9 2.9974 -12.2351 4.6701 26 6 2.2185 -3.6986 0.1571 27 1 -0.4850 0.8400 0.0004 28 1 -0.2255 -1.9548 -1.2753 29 1 -0.6070 -2.1868 1.1136 30 1 0.8674 -2.1837 2.1330 31 1 -0.6839 -4.5137 1.0197 32 1 0.2960 -4.4169 2.5095 33 1 2.4237 -5.0521 2.5508 34 1 3.1101 -5.9133 1.1524 35 1 2.8198 -7.6363 3.2043 36 1 2.6434 -9.6539 4.3652 37 1 0.0606 -10.6813 4.8575 38 1 0.7471 -11.5425 3.4590 39 1 3.0365 -3.4404 0.8297 40 1 2.6069 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:01 Heat of formation + Delta-G solvation = -246.560055 kcal Electronic energy + Delta-G solvation = -29439.901794 eV Core-core repulsion = 24454.610527 eV Total energy + Delta-G solvation = -4985.291267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.74300 -48.24903 -48.22162 -41.33503 -39.07342 -37.81926 -35.48190 -34.70879 -34.55625 -32.14587 -30.56375 -29.78666 -28.16189 -26.82169 -24.55981 -23.90308 -22.37964 -20.86951 -20.20238 -19.64123 -19.59318 -19.21480 -18.96323 -17.85834 -17.02855 -16.90005 -16.49042 -15.76582 -15.49413 -15.17760 -15.10130 -14.95359 -14.89224 -14.64108 -14.62916 -14.38058 -14.34747 -14.28963 -14.02415 -13.81154 -13.46614 -12.57015 -12.52353 -12.42145 -12.28745 -11.74771 -11.30616 -11.26392 -11.16016 -11.05962 -10.78028 -10.42239 -10.33196 -10.23526 -9.89293 -9.88136 -9.63083 -9.22693 -8.62467 -8.08193 -7.70339 -6.22777 -4.31678 1.65087 2.02192 2.11793 3.05859 3.06105 3.19043 3.25740 3.28282 3.31291 3.40111 3.69645 4.26362 4.51235 4.55990 4.62508 4.69657 5.05274 5.26820 5.36080 5.47084 5.64713 5.73598 5.88668 6.03610 6.13360 6.21002 6.47421 6.63690 6.87132 7.01702 7.05882 7.37338 7.47499 7.55691 7.59232 7.80108 7.96875 8.06485 8.13640 8.70822 9.37322 9.52303 10.84129 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034182 B = 0.001910 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.955352 B =14653.704711 C =14900.372568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.252 3.748 10 O -0.578 6.578 11 C -0.146 4.146 12 C 0.051 3.949 13 N -0.512 5.512 14 C 0.036 3.964 15 C 0.513 3.487 16 O -0.437 6.437 17 N -0.692 5.692 18 C 0.703 3.297 19 O -0.522 6.522 20 N -0.742 5.742 21 C 0.096 3.904 22 C 0.450 3.550 23 F -0.178 7.178 24 F -0.171 7.171 25 F -0.178 7.178 26 C 0.059 3.941 27 H 0.266 0.734 28 H 0.378 0.622 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.409 0.591 36 H 0.405 0.595 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -20.600 12.997 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.212 3.788 10 O -0.386 6.386 11 C -0.185 4.185 12 C -0.076 4.076 13 N -0.237 5.237 14 C -0.096 4.096 15 C 0.298 3.702 16 O -0.301 6.301 17 N -0.359 5.359 18 C 0.403 3.597 19 O -0.392 6.392 20 N -0.403 5.403 21 C -0.031 4.031 22 C 0.395 3.605 23 F -0.159 7.159 24 F -0.153 7.153 25 F -0.159 7.159 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.227 0.773 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.244 0.756 36 H 0.240 0.760 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.652 -21.560 11.773 25.206 hybrid contribution 1.556 1.780 1.562 2.833 sum 7.208 -19.780 13.335 24.920 Atomic orbital electron populations 1.69751 1.05944 1.27340 1.50123 1.25015 0.94984 0.99456 0.93714 0.86422 0.80074 0.83090 0.77681 1.19695 1.20789 1.20958 1.21550 0.93515 0.90586 1.51841 0.92002 1.19509 0.86841 0.90389 0.82076 1.86152 1.51348 1.56745 1.44308 1.23306 1.02865 0.91879 1.00489 1.22840 0.94478 0.95653 0.94610 1.63394 1.08385 1.21664 1.30217 1.22158 0.96930 0.92465 0.98062 1.21204 0.87847 0.83825 0.77356 1.90845 1.18020 1.74448 1.46741 1.44274 1.21117 1.21491 1.49043 1.15930 0.84584 0.79709 0.79435 1.91121 1.17233 1.76415 1.54474 1.44814 1.20865 1.22087 1.52549 1.22332 0.94739 0.86266 0.99717 1.20514 0.79142 0.80053 0.80788 1.93239 1.93615 1.77291 1.51766 1.93243 1.76937 1.52288 1.92810 1.93238 1.49244 1.91888 1.81543 1.23056 0.95127 0.90074 0.98446 0.92378 0.77312 0.90270 0.92628 0.90894 0.95045 0.91443 0.87686 0.75573 0.75956 0.86471 0.86423 0.93177 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 10.75 55.43 0.60 -23.03 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.96 8.27 -34.44 -0.28 -14.24 16 8 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 9 C 0.25 6.16 0.87 -89.64 -0.08 6.08 16 10 O -0.58 -15.24 13.16 -35.23 -0.46 -15.70 16 11 C -0.15 -3.36 5.37 -24.91 -0.13 -3.49 16 12 C 0.05 1.06 5.65 -2.84 -0.02 1.04 16 13 N -0.51 -9.84 4.85 -232.69 -1.13 -10.97 16 14 C 0.04 0.49 5.03 -4.98 -0.03 0.47 16 15 C 0.51 7.45 7.42 -10.99 -0.08 7.36 16 16 O -0.44 -8.79 13.94 -18.21 -0.25 -9.04 16 17 N -0.69 -6.70 5.24 -15.78 -0.08 -6.78 16 18 C 0.70 7.90 8.50 -86.92 -0.74 7.16 16 19 O -0.52 -8.72 14.74 -18.48 -0.27 -8.99 16 20 N -0.74 -4.85 5.42 -65.23 -0.35 -5.20 16 21 C 0.10 0.55 5.64 -4.04 -0.02 0.52 16 22 C 0.45 2.42 3.11 37.16 0.12 2.54 16 23 F -0.18 -1.08 17.17 2.25 0.04 -1.04 16 24 F -0.17 -1.08 17.32 2.25 0.04 -1.04 16 25 F -0.18 -1.07 17.18 2.25 0.04 -1.03 16 26 C 0.06 1.23 5.86 -2.30 -0.01 1.21 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.38 10.03 7.56 45.56 0.34 10.37 16 29 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 30 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 31 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.03 0.58 7.31 -51.93 -0.38 0.20 16 33 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 34 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.41 1.87 8.71 -40.82 -0.36 1.52 16 36 H 0.41 1.45 8.37 -40.82 -0.34 1.11 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 40 H 0.07 1.57 8.14 -51.92 -0.42 1.15 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -34.91 351.56 -6.95 -41.85 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.01 Total: 10.08 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.37 Total: 10.40 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.97 Total: -45.98 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.99 Total: -33.73 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.12 Total: -3.11 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.91 -6.95 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.706 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds