Wall clock time and date at job start Tue Mar 31 2020 22:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48506 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47204 * 300.00097 * 3 2 1 6 6 H 1.48501 * 109.46960 * 60.00574 * 3 2 1 7 7 C 1.37881 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99921 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.87625 * 62.39548 * 9 7 2 11 11 C 1.55138 * 110.99315 * 298.54825 * 9 7 2 12 12 C 1.54319 * 103.02067 * 206.25484 * 11 9 7 13 13 N 1.47437 * 107.23358 * 22.28690 * 12 11 9 14 14 C 1.46896 * 111.00371 * 123.25945 * 13 12 11 15 15 C 1.50696 * 109.47449 * 69.87080 * 14 13 12 16 16 O 1.21234 * 119.99795 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00141 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99906 * 180.02562 * 17 15 14 19 19 O 1.21543 * 119.99987 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99902 * 179.97438 * 18 17 15 21 21 C 1.46506 * 119.99873 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46684 * 180.02562 * 21 20 18 23 23 F 1.39897 * 109.47114 * 60.00538 * 22 21 20 24 24 F 1.39905 * 109.46699 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47493 * 299.99924 * 22 21 20 26 26 C 1.47841 * 108.56635 * 0.98683 * 13 12 11 27 27 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96694 * 113.99978 * 297.60842 * 10 9 7 29 29 H 1.09004 * 110.70692 * 87.87470 * 11 9 7 30 30 H 1.08993 * 110.85727 * 324.71217 * 11 9 7 31 31 H 1.09008 * 109.88832 * 262.87741 * 12 11 9 32 32 H 1.08999 * 109.88887 * 141.69460 * 12 11 9 33 33 H 1.09004 * 109.46736 * 309.87212 * 14 13 12 34 34 H 1.09000 * 109.47357 * 189.87247 * 14 13 12 35 35 H 0.96999 * 120.00043 * 359.97438 * 17 15 14 36 36 H 0.96995 * 120.00018 * 0.27633 * 20 18 17 37 37 H 1.09000 * 109.47212 * 300.00355 * 21 20 18 38 38 H 1.09001 * 109.46577 * 60.00430 * 21 20 18 39 39 H 1.09000 * 110.37350 * 94.73598 * 26 13 12 40 40 H 1.09009 * 110.37362 * 217.07591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6346 1.2721 12 6 0.2539 -4.1627 1.4504 13 7 1.3920 -4.7761 0.7417 14 6 2.1863 -5.6156 1.6485 15 6 1.3956 -6.8444 2.0172 16 8 0.2809 -7.0051 1.5685 17 7 1.9278 -7.7647 2.8457 18 6 1.2208 -8.8639 3.1750 19 8 0.1032 -9.0250 2.7251 20 7 1.7531 -9.7844 4.0030 21 6 0.9844 -10.9790 4.3614 22 6 1.8115 -11.8531 5.3063 23 9 2.1157 -11.1295 6.4644 24 9 1.0777 -12.9941 5.6481 25 9 2.9974 -12.2351 4.6701 26 6 2.2185 -3.6986 0.1571 27 1 -0.4850 0.8400 0.0004 28 1 -0.2255 -1.9548 -1.2753 29 1 -0.6070 -2.1868 1.1136 30 1 0.8674 -2.1837 2.1330 31 1 -0.6839 -4.5137 1.0197 32 1 0.2960 -4.4169 2.5095 33 1 2.4237 -5.0521 2.5508 34 1 3.1101 -5.9133 1.1524 35 1 2.8198 -7.6363 3.2043 36 1 2.6434 -9.6539 4.3652 37 1 0.0606 -10.6813 4.8575 38 1 0.7471 -11.5425 3.4590 39 1 3.0365 -3.4404 0.8297 40 1 2.6069 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:00 Heat of formation + Delta-G solvation = -276.071640 kcal Electronic energy + Delta-G solvation = -29441.181512 eV Core-core repulsion = 24454.610527 eV Total energy + Delta-G solvation = -4986.570985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.21790 -48.73149 -48.69147 -42.31605 -40.38194 -39.23292 -36.45273 -36.18777 -35.69990 -34.15202 -32.04003 -30.53015 -29.89632 -28.26958 -26.15286 -24.68543 -23.31068 -22.03758 -21.49999 -21.39915 -20.44123 -19.68236 -19.48645 -19.01236 -18.56774 -17.82648 -17.46959 -16.95268 -16.82805 -16.55480 -16.39834 -15.82782 -15.70297 -15.68540 -15.39534 -15.35530 -15.11570 -15.10480 -14.83251 -14.82612 -14.37360 -14.24697 -13.99347 -13.80066 -13.46980 -13.11746 -13.01666 -12.88230 -12.77673 -12.55755 -12.21427 -12.18709 -12.17031 -11.69706 -11.29850 -11.10078 -10.81392 -10.58073 -10.56039 -10.04758 -9.16355 -8.18149 -6.34449 0.91612 0.98720 1.42083 1.45994 1.55969 1.59426 2.12343 2.39831 2.51091 2.61142 2.93864 3.05412 3.14741 3.23320 3.65667 3.99205 4.09225 4.10031 4.16460 4.24186 4.38401 4.41137 4.49598 4.75255 4.80740 4.93645 4.97406 5.11957 5.28450 5.38296 5.48650 5.57369 5.82047 5.93868 6.12894 6.23085 6.40255 6.73173 7.07771 7.17257 7.37296 7.47040 8.87371 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034182 B = 0.001910 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.955352 B =14653.704711 C =14900.372568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.229 3.771 10 O -0.591 6.591 11 C -0.136 4.136 12 C 0.067 3.933 13 N -0.532 5.532 14 C 0.035 3.965 15 C 0.519 3.481 16 O -0.501 6.501 17 N -0.669 5.669 18 C 0.703 3.297 19 O -0.578 6.578 20 N -0.720 5.720 21 C 0.094 3.906 22 C 0.462 3.538 23 F -0.179 7.179 24 F -0.175 7.175 25 F -0.179 7.179 26 C 0.071 3.929 27 H 0.267 0.733 28 H 0.370 0.630 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.437 0.563 36 H 0.423 0.577 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 -21.234 14.534 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.189 3.811 10 O -0.399 6.399 11 C -0.175 4.175 12 C -0.061 4.061 13 N -0.256 5.256 14 C -0.096 4.096 15 C 0.306 3.694 16 O -0.370 6.370 17 N -0.338 5.338 18 C 0.404 3.596 19 O -0.453 6.453 20 N -0.380 5.380 21 C -0.032 4.032 22 C 0.407 3.593 23 F -0.161 7.161 24 F -0.157 7.157 25 F -0.160 7.160 26 C -0.056 4.056 27 H 0.076 0.924 28 H 0.218 0.782 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.277 0.723 36 H 0.261 0.739 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.472 -22.234 13.379 27.297 hybrid contribution 0.754 1.898 1.128 2.333 sum 9.225 -20.336 14.506 26.629 Atomic orbital electron populations 1.69865 1.07093 1.27949 1.50496 1.25762 0.95747 1.02521 0.93459 0.85454 0.79189 0.79220 0.77378 1.18856 1.21085 1.20642 1.21846 0.93771 0.91601 1.51962 0.91771 1.19882 0.87571 0.91898 0.81701 1.86151 1.51419 1.56541 1.45746 1.23110 1.00982 0.93548 0.99902 1.22560 0.94272 0.93622 0.95608 1.63171 1.08798 1.21395 1.32279 1.22349 0.97039 0.91362 0.98886 1.21383 0.86898 0.84357 0.76799 1.90845 1.20765 1.75894 1.49452 1.43833 1.22057 1.20179 1.47750 1.16067 0.83920 0.80227 0.79433 1.91102 1.19889 1.77620 1.56678 1.44554 1.21441 1.21166 1.50886 1.22415 0.94846 0.85887 1.00081 1.20297 0.78816 0.79704 0.80458 1.93241 1.93607 1.77301 1.51907 1.93239 1.77087 1.52515 1.92817 1.93240 1.49313 1.91905 1.81552 1.22903 0.94736 0.88847 0.99086 0.92417 0.78154 0.93156 0.92706 0.93850 0.93021 0.88169 0.83817 0.72337 0.73859 0.86150 0.86043 0.90707 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 10.75 21.45 0.23 -48.94 16 2 C 0.03 1.32 5.29 84.66 0.45 1.77 16 3 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -28.56 8.27 25.60 0.21 -28.35 16 8 H 0.06 3.20 7.79 -2.91 -0.02 3.18 16 9 C 0.23 11.22 0.87 -10.16 -0.01 11.21 16 10 O -0.59 -32.01 13.16 -148.98 -1.96 -33.97 16 11 C -0.14 -6.32 5.37 31.77 0.17 -6.15 16 12 C 0.07 2.75 5.65 86.65 0.49 3.24 16 13 N -0.53 -19.66 4.85 -890.10 -4.32 -23.98 16 14 C 0.03 0.83 5.03 85.56 0.43 1.26 16 15 C 0.52 14.05 7.42 87.66 0.65 14.70 16 16 O -0.50 -20.22 13.94 19.87 0.28 -19.94 16 17 N -0.67 -11.11 5.24 -440.53 -2.31 -13.42 16 18 C 0.70 14.61 8.50 179.06 1.52 16.14 16 19 O -0.58 -19.28 14.74 18.91 0.28 -19.00 16 20 N -0.72 -7.69 5.42 -478.57 -2.59 -10.28 16 21 C 0.09 0.91 5.64 86.38 0.49 1.40 16 22 C 0.46 4.06 3.11 71.98 0.22 4.28 16 23 F -0.18 -1.77 17.17 44.97 0.77 -1.00 16 24 F -0.18 -1.94 17.32 44.97 0.78 -1.16 16 25 F -0.18 -1.74 17.18 44.97 0.77 -0.97 16 26 C 0.07 2.81 5.86 86.77 0.51 3.31 16 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.37 20.53 7.56 -74.06 -0.56 19.97 16 29 H 0.05 2.58 7.54 -2.38 -0.02 2.56 16 30 H 0.05 2.49 8.04 -2.39 -0.02 2.47 16 31 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.87 7.31 -2.39 -0.02 1.85 16 33 H 0.10 1.84 7.96 -2.38 -0.02 1.82 16 34 H 0.14 2.35 8.07 -2.39 -0.02 2.33 16 35 H 0.44 2.13 8.71 -92.71 -0.81 1.33 16 36 H 0.42 1.61 8.37 -92.71 -0.78 0.83 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 40 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -78.60 351.56 -1.92 -80.52 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -1.00 Total: 26.19 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.13 Total: 22.82 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -8.99 Total: -96.61 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: -1.40 Total: -72.91 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 2.32 Total: -3.12 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -78.60 -1.92 -80.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.556 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds