Wall clock time and date at job start Tue Mar 31 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48502 * 109.47114 * 264.84203 * 3 2 1 5 5 H 1.48494 * 109.47483 * 24.84518 * 3 2 1 6 6 H 1.48504 * 109.46928 * 144.84497 * 3 2 1 7 7 C 1.37874 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00022 * 6.10766 * 7 2 1 9 9 C 1.50695 * 119.99778 * 186.09664 * 7 2 1 10 10 O 1.42903 * 110.76615 * 62.36120 * 9 7 2 11 11 C 1.55398 * 110.84664 * 185.61906 * 9 7 2 12 12 C 1.54911 * 101.74194 * 153.86364 * 11 9 7 13 13 N 1.47840 * 104.79776 * 323.02013 * 12 11 9 14 14 C 1.46898 * 111.00175 * 146.36034 * 13 12 11 15 15 C 1.50700 * 109.47000 * 69.15647 * 14 13 12 16 16 O 1.21236 * 119.99811 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00375 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00176 * 180.02562 * 17 15 14 19 19 O 1.21533 * 120.00190 * 0.02562 * 18 17 15 20 20 N 1.34773 * 119.99906 * 180.02562 * 18 17 15 21 21 C 1.46498 * 119.99918 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47136 * 179.97438 * 21 20 18 23 23 F 1.39903 * 109.47032 * 59.99997 * 22 21 20 24 24 F 1.39898 * 109.47261 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47428 * 300.00165 * 22 21 20 26 26 C 1.47444 * 108.56643 * 24.09960 * 13 12 11 27 27 H 0.96998 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96693 * 114.00120 * 56.79401 * 10 9 7 29 29 H 1.09001 * 110.87276 * 35.78040 * 11 9 7 30 30 H 1.08993 * 111.05848 * 272.03682 * 11 9 7 31 31 H 1.08998 * 110.37437 * 204.19168 * 12 11 9 32 32 H 1.09005 * 110.37210 * 81.85429 * 12 11 9 33 33 H 1.08998 * 109.47631 * 189.16079 * 14 13 12 34 34 H 1.09008 * 109.47402 * 309.16203 * 14 13 12 35 35 H 0.97003 * 119.99478 * 0.02562 * 17 15 14 36 36 H 0.97000 * 120.00168 * 359.97438 * 20 18 17 37 37 H 1.08991 * 109.47061 * 299.99703 * 21 20 18 38 38 H 1.08996 * 109.47053 * 59.99964 * 21 20 18 39 39 H 1.08998 * 109.89458 * 118.41848 * 26 13 12 40 40 H 1.09002 * 109.88918 * 239.44240 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6056 1.9836 -1.3944 5 1 1.3963 2.6817 0.5882 6 1 3.4879 1.4742 0.8062 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1267 -0.0986 9 6 3.5051 -1.1976 0.1391 10 8 3.8992 -0.6421 1.3954 11 6 4.0724 -2.6347 -0.0275 12 6 5.5100 -2.3499 -0.5294 13 7 5.3745 -1.1748 -1.4162 14 6 6.5654 -0.3181 -1.3408 15 6 7.7352 -1.0275 -1.9729 16 8 7.5909 -2.1368 -2.4404 17 7 8.9416 -0.4284 -2.0195 18 6 9.9876 -1.0626 -2.5852 19 8 9.8430 -2.1746 -3.0539 20 7 11.1941 -0.4637 -2.6313 21 6 12.3310 -1.1529 -3.2468 22 6 13.5714 -0.2606 -3.1687 23 9 13.8634 0.0158 -1.8286 24 9 14.6572 -0.9189 -3.7559 25 9 13.3279 0.9371 -3.8494 26 6 4.1628 -0.4302 -1.0271 27 1 -0.4850 0.8400 0.0004 28 1 3.5132 -1.0886 2.1613 29 1 3.5031 -3.1933 -0.7704 30 1 4.0891 -3.1622 0.9262 31 1 5.8934 -3.2041 -1.0874 32 1 6.1660 -2.1184 0.3098 33 1 6.3762 0.6148 -1.8717 34 1 6.7925 -0.1024 -0.2967 35 1 9.0570 0.4593 -1.6458 36 1 11.3095 0.4239 -2.2576 37 1 12.5204 -2.0861 -2.7166 38 1 12.1036 -1.3678 -4.2909 39 1 4.4330 0.5751 -0.7039 40 1 3.4741 -0.3759 -1.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:04 Heat of formation + Delta-G solvation = -236.049507 kcal Electronic energy + Delta-G solvation = -29700.564151 eV Core-core repulsion = 24715.728656 eV Total energy + Delta-G solvation = -4984.835495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.76943 -48.27640 -48.24681 -41.40387 -39.25121 -38.09202 -35.54445 -34.87446 -34.71571 -32.41620 -30.95861 -29.91193 -28.49854 -27.03577 -24.43857 -23.85360 -22.47597 -21.03073 -20.57572 -19.76800 -19.73443 -19.24157 -18.99613 -17.98904 -17.21369 -17.00857 -16.53234 -15.86373 -15.66294 -15.37170 -15.16759 -15.00425 -14.97540 -14.71821 -14.66491 -14.54013 -14.37911 -14.36754 -13.97178 -13.82180 -13.30880 -13.25672 -12.79877 -12.56240 -12.52699 -12.12199 -11.77541 -11.46982 -11.14816 -11.00169 -10.74333 -10.59288 -10.31317 -10.21461 -10.14477 -9.93811 -9.70201 -9.02472 -8.72321 -8.47589 -7.88645 -6.21956 -4.31679 1.60290 1.94393 2.08176 2.98984 3.03154 3.19954 3.25122 3.36080 3.37017 3.50037 3.65948 4.33673 4.39375 4.52280 4.52995 4.65573 5.07150 5.11314 5.27130 5.34121 5.42547 5.60494 5.68320 5.81647 5.89927 6.05204 6.13894 6.22267 6.60602 6.65836 6.85232 6.95168 7.14617 7.30601 7.41371 7.54982 7.90270 7.98477 8.21175 8.76415 8.91317 9.41569 10.89043 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.002174 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.830220 B =12876.859566 C =13340.117032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.086 3.914 3 Si 0.872 3.128 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.234 1.234 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.204 3.796 10 O -0.581 6.581 11 C -0.140 4.140 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.034 3.966 15 C 0.516 3.484 16 O -0.440 6.440 17 N -0.692 5.692 18 C 0.704 3.296 19 O -0.522 6.522 20 N -0.742 5.742 21 C 0.096 3.904 22 C 0.450 3.550 23 F -0.178 7.178 24 F -0.171 7.171 25 F -0.177 7.177 26 C 0.048 3.952 27 H 0.266 0.734 28 H 0.366 0.634 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.105 3.709 -3.365 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.119 4.119 3 Si 0.699 3.301 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.157 1.157 7 C -0.584 4.584 8 H 0.096 0.904 9 C 0.164 3.836 10 O -0.388 6.388 11 C -0.179 4.179 12 C -0.079 4.079 13 N -0.236 5.236 14 C -0.098 4.098 15 C 0.301 3.699 16 O -0.305 6.305 17 N -0.359 5.359 18 C 0.404 3.596 19 O -0.393 6.393 20 N -0.403 5.403 21 C -0.031 4.031 22 C 0.395 3.605 23 F -0.159 7.159 24 F -0.153 7.153 25 F -0.159 7.159 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.245 0.755 36 H 0.241 0.759 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.069 0.931 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.985 2.283 -5.017 27.542 hybrid contribution 0.537 2.074 1.484 2.606 sum 27.522 4.357 -3.533 28.088 Atomic orbital electron populations 1.69936 1.06607 1.27492 1.48350 1.25008 0.94600 0.99560 0.92760 0.87116 0.81640 0.82606 0.78712 1.20763 1.22526 1.15721 1.21264 0.88962 0.95109 1.53051 0.90378 1.20266 0.93973 0.87963 0.81413 1.86410 1.74467 1.61600 1.16334 1.23255 0.94467 0.99435 1.00724 1.23061 0.97829 0.93492 0.93542 1.63504 1.00466 1.07011 1.52658 1.22226 0.90023 0.97195 1.00324 1.21143 0.82240 0.86923 0.79571 1.90822 1.82165 1.17874 1.39612 1.44250 1.10133 1.22223 1.59271 1.15907 0.79787 0.84450 0.79429 1.91113 1.82702 1.17391 1.48066 1.44811 1.08125 1.21774 1.65571 1.22334 0.81651 0.95192 1.03882 1.20510 0.85973 0.79991 0.74029 1.93242 1.94358 1.94219 1.34091 1.93242 1.57231 1.80644 1.84137 1.93241 1.94216 1.48438 1.79996 1.23393 0.90150 0.95734 0.98552 0.92412 0.78732 0.90330 0.91788 0.90219 0.94508 0.87616 0.90940 0.75476 0.75913 0.86430 0.86423 0.93137 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 2 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.87 20.66 23.96 -169.99 -4.07 16.58 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.23 -5.35 5.32 56.52 0.30 -5.05 16 7 C -0.55 -14.53 8.70 -34.44 -0.30 -14.83 16 8 H 0.08 2.27 8.03 -52.49 -0.42 1.85 16 9 C 0.20 4.53 0.70 -89.81 -0.06 4.46 16 10 O -0.58 -12.34 10.71 -35.23 -0.38 -12.72 16 11 C -0.14 -2.77 6.23 -24.45 -0.15 -2.92 16 12 C 0.05 0.87 5.74 -2.30 -0.01 0.86 16 13 N -0.51 -9.44 4.86 -232.69 -1.13 -10.57 16 14 C 0.03 0.48 5.05 -4.98 -0.03 0.45 16 15 C 0.52 7.25 7.56 -10.98 -0.08 7.16 16 16 O -0.44 -8.35 13.44 -18.21 -0.24 -8.60 16 17 N -0.69 -6.56 5.24 -15.78 -0.08 -6.64 16 18 C 0.70 7.64 8.50 -86.92 -0.74 6.90 16 19 O -0.52 -8.39 14.74 -18.47 -0.27 -8.66 16 20 N -0.74 -4.69 5.42 -65.24 -0.35 -5.04 16 21 C 0.10 0.52 5.64 -4.04 -0.02 0.50 16 22 C 0.45 2.35 3.11 37.16 0.12 2.46 16 23 F -0.18 -1.05 17.18 2.25 0.04 -1.01 16 24 F -0.17 -1.05 17.32 2.25 0.04 -1.01 16 25 F -0.18 -1.05 17.18 2.25 0.04 -1.01 16 26 C 0.05 1.01 4.33 -2.83 -0.01 1.00 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.37 6.86 9.07 45.56 0.41 7.27 16 29 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.49 7.38 -51.93 -0.38 1.11 16 32 H 0.04 0.63 7.62 -51.93 -0.40 0.24 16 33 H 0.11 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.07 0.91 7.85 -51.92 -0.41 0.50 16 35 H 0.41 1.92 8.71 -40.82 -0.36 1.56 16 36 H 0.41 1.42 8.37 -40.82 -0.34 1.08 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 1.03 4.89 -51.93 -0.25 0.77 16 40 H 0.10 2.19 7.52 -51.93 -0.39 1.80 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -36.40 342.82 -5.75 -42.14 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.88 Total: 8.42 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.39 Total: 8.31 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.79 Total: -47.61 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.89 Total: -29.98 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.12 Total: -3.03 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.07 Total: 16.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.40 -5.75 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.908 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds