Wall clock time and date at job start Tue Mar 31 2020 22:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48502 * 109.47114 * 264.84203 * 3 2 1 5 5 H 1.48494 * 109.47483 * 24.84518 * 3 2 1 6 6 H 1.48504 * 109.46928 * 144.84497 * 3 2 1 7 7 C 1.37874 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00022 * 6.10766 * 7 2 1 9 9 C 1.50695 * 119.99778 * 186.09664 * 7 2 1 10 10 O 1.42903 * 110.76615 * 62.36120 * 9 7 2 11 11 C 1.55398 * 110.84664 * 185.61906 * 9 7 2 12 12 C 1.54911 * 101.74194 * 153.86364 * 11 9 7 13 13 N 1.47840 * 104.79776 * 323.02013 * 12 11 9 14 14 C 1.46898 * 111.00175 * 146.36034 * 13 12 11 15 15 C 1.50700 * 109.47000 * 69.15647 * 14 13 12 16 16 O 1.21236 * 119.99811 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00375 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00176 * 180.02562 * 17 15 14 19 19 O 1.21533 * 120.00190 * 0.02562 * 18 17 15 20 20 N 1.34773 * 119.99906 * 180.02562 * 18 17 15 21 21 C 1.46498 * 119.99918 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47136 * 179.97438 * 21 20 18 23 23 F 1.39903 * 109.47032 * 59.99997 * 22 21 20 24 24 F 1.39898 * 109.47261 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47428 * 300.00165 * 22 21 20 26 26 C 1.47444 * 108.56643 * 24.09960 * 13 12 11 27 27 H 0.96998 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96693 * 114.00120 * 56.79401 * 10 9 7 29 29 H 1.09001 * 110.87276 * 35.78040 * 11 9 7 30 30 H 1.08993 * 111.05848 * 272.03682 * 11 9 7 31 31 H 1.08998 * 110.37437 * 204.19168 * 12 11 9 32 32 H 1.09005 * 110.37210 * 81.85429 * 12 11 9 33 33 H 1.08998 * 109.47631 * 189.16079 * 14 13 12 34 34 H 1.09008 * 109.47402 * 309.16203 * 14 13 12 35 35 H 0.97003 * 119.99478 * 0.02562 * 17 15 14 36 36 H 0.97000 * 120.00168 * 359.97438 * 20 18 17 37 37 H 1.08991 * 109.47061 * 299.99703 * 21 20 18 38 38 H 1.08996 * 109.47053 * 59.99964 * 21 20 18 39 39 H 1.08998 * 109.89458 * 118.41848 * 26 13 12 40 40 H 1.09002 * 109.88918 * 239.44240 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6056 1.9836 -1.3944 5 1 1.3963 2.6817 0.5882 6 1 3.4879 1.4742 0.8062 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1267 -0.0986 9 6 3.5051 -1.1976 0.1391 10 8 3.8992 -0.6421 1.3954 11 6 4.0724 -2.6347 -0.0275 12 6 5.5100 -2.3499 -0.5294 13 7 5.3745 -1.1748 -1.4162 14 6 6.5654 -0.3181 -1.3408 15 6 7.7352 -1.0275 -1.9729 16 8 7.5909 -2.1368 -2.4404 17 7 8.9416 -0.4284 -2.0195 18 6 9.9876 -1.0626 -2.5852 19 8 9.8430 -2.1746 -3.0539 20 7 11.1941 -0.4637 -2.6313 21 6 12.3310 -1.1529 -3.2468 22 6 13.5714 -0.2606 -3.1687 23 9 13.8634 0.0158 -1.8286 24 9 14.6572 -0.9189 -3.7559 25 9 13.3279 0.9371 -3.8494 26 6 4.1628 -0.4302 -1.0271 27 1 -0.4850 0.8400 0.0004 28 1 3.5132 -1.0886 2.1613 29 1 3.5031 -3.1933 -0.7704 30 1 4.0891 -3.1622 0.9262 31 1 5.8934 -3.2041 -1.0874 32 1 6.1660 -2.1184 0.3098 33 1 6.3762 0.6148 -1.8717 34 1 6.7925 -0.1024 -0.2967 35 1 9.0570 0.4593 -1.6458 36 1 11.3095 0.4239 -2.2576 37 1 12.5204 -2.0861 -2.7166 38 1 12.1036 -1.3678 -4.2909 39 1 4.4330 0.5751 -0.7039 40 1 3.4741 -0.3759 -1.8702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:03 Heat of formation + Delta-G solvation = -268.467905 kcal Electronic energy + Delta-G solvation = -29701.969918 eV Core-core repulsion = 24715.728656 eV Total energy + Delta-G solvation = -4986.241262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.22156 -48.73574 -48.69577 -42.34081 -40.55335 -39.35626 -36.51356 -36.20846 -35.71616 -34.47372 -32.37478 -30.56852 -30.18452 -28.39525 -25.97680 -24.70582 -23.37745 -22.25825 -21.66260 -21.48559 -20.49304 -19.68620 -19.49465 -19.17372 -18.70591 -17.90434 -17.41844 -17.11140 -16.99082 -16.59571 -16.29829 -16.00595 -15.69843 -15.59002 -15.39453 -15.30479 -15.12005 -15.01880 -14.85743 -14.83544 -14.81356 -14.60049 -14.29412 -14.05067 -13.62785 -13.39436 -13.07174 -13.02025 -12.58203 -12.46203 -12.27924 -12.18704 -11.93828 -11.91254 -11.31247 -10.99135 -10.84279 -10.71247 -10.56801 -10.24051 -9.29328 -8.33636 -6.47819 0.89691 0.95511 1.38852 1.45188 1.58753 1.63731 2.10001 2.39959 2.46436 2.60629 2.93415 3.01327 3.05970 3.20551 3.54688 3.60310 3.98111 4.09199 4.21210 4.23868 4.26420 4.32685 4.38032 4.46856 4.67955 4.79930 4.94122 4.96565 5.13081 5.23340 5.34276 5.43208 5.58618 5.89305 6.00992 6.12294 6.35387 6.63622 7.03327 7.15006 7.16586 7.32829 8.81039 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.002174 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.830220 B =12876.859566 C =13340.117032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.033 0.967 9 C 0.204 3.796 10 O -0.577 6.577 11 C -0.139 4.139 12 C 0.061 3.939 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.524 3.476 16 O -0.496 6.496 17 N -0.671 5.671 18 C 0.705 3.295 19 O -0.576 6.576 20 N -0.721 5.721 21 C 0.094 3.906 22 C 0.461 3.539 23 F -0.179 7.179 24 F -0.175 7.175 25 F -0.179 7.179 26 C 0.056 3.944 27 H 0.267 0.733 28 H 0.377 0.623 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.436 0.564 36 H 0.422 0.578 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.239 5.942 -2.754 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.234 1.234 6 H -0.134 1.134 7 C -0.587 4.587 8 H 0.052 0.948 9 C 0.163 3.837 10 O -0.385 6.385 11 C -0.177 4.177 12 C -0.066 4.066 13 N -0.253 5.253 14 C -0.100 4.100 15 C 0.311 3.689 16 O -0.365 6.365 17 N -0.339 5.339 18 C 0.405 3.595 19 O -0.450 6.450 20 N -0.381 5.381 21 C -0.032 4.032 22 C 0.406 3.594 23 F -0.161 7.161 24 F -0.156 7.156 25 F -0.161 7.161 26 C -0.071 4.071 27 H 0.076 0.924 28 H 0.225 0.775 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.276 0.724 36 H 0.261 0.739 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 30.196 4.589 -4.374 30.854 hybrid contribution -0.410 1.313 1.306 1.897 sum 29.787 5.902 -3.067 30.520 Atomic orbital electron populations 1.70086 1.08618 1.28432 1.50629 1.25903 0.95246 1.03515 0.92386 0.86113 0.80752 0.77423 0.79609 1.19290 1.23370 1.13373 1.21517 0.91697 0.93370 1.52138 0.94826 1.20117 0.91216 0.89940 0.82398 1.86344 1.74138 1.61770 1.16227 1.23192 0.95389 0.98062 1.01099 1.22912 0.96448 0.93450 0.93831 1.63327 1.01511 1.07601 1.52887 1.22391 0.88033 0.97231 1.02336 1.21160 0.83291 0.86057 0.78424 1.90822 1.83194 1.20300 1.42166 1.43831 1.08623 1.23042 1.58436 1.16020 0.80735 0.83851 0.78899 1.91094 1.83646 1.19936 1.50344 1.44568 1.06889 1.22195 1.64471 1.22421 0.81217 0.95350 1.04208 1.20322 0.85589 0.79653 0.73786 1.93243 1.94374 1.94215 1.34252 1.93238 1.57424 1.80761 1.84224 1.93242 1.94201 1.48582 1.80058 1.23077 0.90884 0.96351 0.96813 0.92427 0.77474 0.92390 0.90260 0.91075 0.92736 0.84663 0.88321 0.72441 0.73918 0.85966 0.86013 0.91772 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.96 21.45 0.30 -56.62 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.94 41.82 23.96 68.60 1.64 43.46 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.21 -8.62 5.32 99.48 0.53 -8.09 16 7 C -0.55 -29.84 8.70 25.60 0.22 -29.62 16 8 H 0.03 2.06 8.03 -2.91 -0.02 2.04 16 9 C 0.20 8.81 0.70 -10.27 -0.01 8.80 16 10 O -0.58 -22.80 10.71 -148.98 -1.60 -24.39 16 11 C -0.14 -5.41 6.23 32.07 0.20 -5.21 16 12 C 0.06 2.11 5.74 86.78 0.50 2.61 16 13 N -0.53 -18.30 4.86 -890.09 -4.33 -22.63 16 14 C 0.03 0.74 5.05 85.56 0.43 1.18 16 15 C 0.52 13.35 7.56 87.66 0.66 14.01 16 16 O -0.50 -18.39 13.44 19.87 0.27 -18.12 16 17 N -0.67 -10.54 5.24 -440.53 -2.31 -12.85 16 18 C 0.70 13.73 8.50 179.06 1.52 15.25 16 19 O -0.58 -18.05 14.74 18.94 0.28 -17.77 16 20 N -0.72 -7.10 5.42 -478.62 -2.59 -9.69 16 21 C 0.09 0.83 5.64 86.38 0.49 1.31 16 22 C 0.46 3.79 3.11 71.98 0.22 4.01 16 23 F -0.18 -1.68 17.18 44.97 0.77 -0.91 16 24 F -0.18 -1.83 17.32 44.97 0.78 -1.05 16 25 F -0.18 -1.69 17.18 44.97 0.77 -0.92 16 26 C 0.06 2.22 4.33 86.65 0.38 2.59 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.38 13.22 9.07 -74.06 -0.67 12.55 16 29 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.07 2.62 7.38 -2.39 -0.02 2.60 16 32 H 0.05 1.69 7.62 -2.38 -0.02 1.67 16 33 H 0.14 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.10 1.92 7.85 -2.38 -0.02 1.90 16 35 H 0.44 2.08 8.71 -92.71 -0.81 1.27 16 36 H 0.42 1.42 8.37 -92.71 -0.78 0.64 16 37 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 2.34 4.89 -2.39 -0.01 2.33 16 40 H 0.07 3.22 7.52 -2.39 -0.02 3.20 16 Total: -1.00 -81.83 342.82 -2.22 -84.05 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -1.29 Total: 20.40 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.08 Total: 17.03 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -8.93 Total: -101.78 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -1.05 Total: -60.29 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 2.32 Total: -2.87 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.64 Total: 43.46 kcal Total: -81.83 -2.22 -84.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.413 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds