Wall clock time and date at job start Tue Mar 31 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48507 * 109.47187 * 267.32114 * 3 2 1 5 5 H 1.48504 * 109.47244 * 27.31882 * 3 2 1 6 6 H 1.48494 * 109.47426 * 147.31826 * 3 2 1 7 7 C 1.37879 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99938 * 353.53891 * 7 2 1 9 9 C 1.50697 * 119.99940 * 173.53715 * 7 2 1 10 10 O 1.42898 * 110.87786 * 328.67417 * 9 7 2 11 11 C 1.55149 * 110.99190 * 204.82873 * 9 7 2 12 12 C 1.54318 * 103.01709 * 206.21977 * 11 9 7 13 13 N 1.47443 * 107.23759 * 22.28716 * 12 11 9 14 14 C 1.46891 * 111.00267 * 123.25600 * 13 12 11 15 15 C 1.47204 * 109.47316 * 69.87110 * 14 13 12 16 16 C 8.10755 * 152.63648 * 149.75137 * 2 1 3 17 17 C 9.45124 * 155.16732 * 154.36256 * 2 1 3 18 18 C 1.39527 * 120.14341 * 92.41153 * 17 16 15 19 19 C 1.37979 * 119.85939 * 180.02562 * 18 17 16 20 20 C 1.38347 * 120.13837 * 359.97438 * 19 18 17 21 21 C 1.50692 * 119.85623 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.47340 * 89.99931 * 21 20 19 23 23 F 1.39900 * 109.47273 * 210.00099 * 21 20 19 24 24 F 1.39902 * 109.47353 * 330.00014 * 21 20 19 25 25 C 1.38343 * 120.28712 * 0.02562 * 20 19 18 26 26 C 1.37973 * 120.14314 * 0.02562 * 25 20 19 27 27 C 1.47847 * 108.56514 * 0.98515 * 13 12 11 28 28 H 0.97000 * 119.99952 * 359.97438 * 1 2 3 29 29 H 0.96691 * 114.00037 * 292.35783 * 10 9 7 30 30 H 1.09000 * 110.70173 * 87.83811 * 11 9 7 31 31 H 1.09004 * 110.85023 * 324.67377 * 11 9 7 32 32 H 1.08997 * 109.88704 * 262.87554 * 12 11 9 33 33 H 1.09001 * 109.88529 * 141.69260 * 12 11 9 34 34 H 1.09005 * 109.47149 * 309.87350 * 14 13 12 35 35 H 1.08997 * 109.47207 * 189.87494 * 14 13 12 36 36 H 1.08003 * 120.07068 * 0.28717 * 18 17 16 37 37 H 1.08000 * 119.93071 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.92938 * 179.97438 * 25 20 19 39 39 H 1.08004 * 120.07358 * 179.97438 * 26 25 20 40 40 H 1.08997 * 110.37458 * 94.73511 * 27 13 12 41 41 H 1.08996 * 110.37568 * 217.08011 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5534 2.0137 -1.3986 5 1 1.4195 2.6684 0.6426 6 1 3.5172 1.4572 0.7560 7 6 2.0046 -1.1941 -0.0005 8 1 1.4697 -2.1265 0.1043 9 6 3.5043 -1.1981 -0.1474 10 8 3.9404 -0.0995 -0.9505 11 6 4.0018 -2.5462 -0.7326 12 6 5.4447 -2.6472 -0.1947 13 7 5.5265 -1.7882 1.0008 14 6 5.9713 -2.5560 2.1714 15 6 7.3867 -2.9253 2.0070 16 6 8.5155 -3.2191 1.8772 17 6 9.8925 -3.5785 1.7174 18 6 10.4489 -3.6712 0.4412 19 6 11.7761 -4.0184 0.2939 20 6 12.5550 -4.2738 1.4084 21 6 14.0040 -4.6519 1.2402 22 9 14.7912 -3.4954 1.2433 23 9 14.3942 -5.4844 2.2947 24 9 14.1720 -5.3271 0.0265 25 6 12.0095 -4.1836 2.6765 26 6 10.6834 -3.8384 2.8373 27 6 4.1984 -1.1831 1.2374 28 1 -0.4850 0.8400 0.0004 29 1 3.6747 -0.1607 -1.8782 30 1 3.9978 -2.5181 -1.8222 31 1 3.3954 -3.3750 -0.3674 32 1 6.1477 -2.2982 -0.9510 33 1 5.6686 -3.6795 0.0744 34 1 5.3685 -3.4594 2.2639 35 1 5.8561 -1.9489 3.0693 36 1 9.8430 -3.4675 -0.4294 37 1 12.2078 -4.0909 -0.6934 38 1 12.6228 -4.3847 3.5425 39 1 10.2585 -3.7687 3.8278 40 1 3.6316 -1.7795 1.9524 41 1 4.3062 -0.1597 1.5967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:07 Heat of formation + Delta-G solvation = -133.798412 kcal Electronic energy + Delta-G solvation = -27528.353301 eV Core-core repulsion = 22958.801009 eV Total energy + Delta-G solvation = -4569.552292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.19397 -48.70904 -48.66123 -40.48994 -40.37223 -37.23368 -35.24779 -34.43451 -33.09345 -32.24157 -31.28365 -30.04143 -28.17414 -26.75169 -25.63864 -23.94225 -23.33694 -21.97132 -21.53717 -19.62892 -19.50412 -19.38913 -19.37859 -18.99281 -17.27084 -17.11068 -16.61763 -16.34874 -16.20573 -15.85365 -15.82356 -15.53541 -15.40448 -15.11813 -14.95511 -14.91842 -14.81761 -14.74158 -14.47227 -14.35411 -14.19741 -13.98569 -13.87339 -13.37644 -13.25289 -13.09663 -12.61704 -12.51198 -12.45197 -12.17372 -12.06561 -11.90905 -11.83794 -11.25563 -11.14378 -10.63771 -10.25826 -10.17839 -9.78486 -9.26652 -8.34047 -6.46398 -0.52418 0.19463 1.43084 1.49616 1.54230 1.61137 1.65791 1.76420 2.46384 2.64970 2.67597 2.91803 2.98234 3.00395 3.25224 3.38951 3.60243 3.79597 3.82904 3.87858 4.07838 4.15440 4.27119 4.33287 4.33814 4.44043 4.51878 4.62065 4.65324 4.76338 4.86106 4.96333 5.05550 5.06347 5.11960 5.21184 5.30908 5.38636 5.49786 5.61428 5.94317 6.09235 6.09764 6.44510 6.60587 7.02243 7.33929 8.78678 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030068 B = 0.001793 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.006808 B =15609.652804 C =15725.547755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 1.008 2.992 4 H -0.284 1.284 5 H -0.339 1.339 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.044 0.956 9 C 0.214 3.786 10 O -0.559 6.559 11 C -0.152 4.152 12 C 0.055 3.945 13 N -0.536 5.536 14 C 0.151 3.849 15 C -0.119 4.119 16 C -0.169 4.169 17 C 0.044 3.956 18 C -0.105 4.105 19 C -0.067 4.067 20 C -0.190 4.190 21 C 0.513 3.487 22 F -0.181 7.181 23 F -0.177 7.177 24 F -0.179 7.179 25 C -0.066 4.066 26 C -0.102 4.102 27 C 0.060 3.940 28 H 0.266 0.734 29 H 0.379 0.621 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.060 0.940 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.814 -10.734 3.686 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.842 3.158 4 H -0.211 1.211 5 H -0.272 1.272 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.063 0.937 9 C 0.174 3.826 10 O -0.367 6.367 11 C -0.190 4.190 12 C -0.072 4.072 13 N -0.261 5.261 14 C 0.025 3.975 15 C -0.120 4.120 16 C -0.170 4.170 17 C 0.044 3.956 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.191 4.191 21 C 0.459 3.541 22 F -0.162 7.162 23 F -0.159 7.159 24 F -0.160 7.160 25 C -0.084 4.084 26 C -0.120 4.120 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.078 0.922 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.323 -10.108 4.164 30.360 hybrid contribution -1.003 -0.063 -0.424 1.090 sum 27.321 -10.172 3.740 29.392 Atomic orbital electron populations 1.70087 1.08432 1.28408 1.50569 1.25871 0.95304 1.03644 0.92746 0.84711 0.76495 0.76290 0.78288 1.21103 1.27175 1.18873 1.21491 0.91418 0.93505 1.51988 0.93744 1.20111 0.90559 0.83700 0.88233 1.86098 1.79525 1.46639 1.24488 1.23292 0.95750 0.98498 1.01501 1.22745 0.96375 0.95398 0.92674 1.63567 1.27422 1.31630 1.03468 1.19372 0.85267 0.97797 0.95075 1.22324 0.93794 0.96750 0.99133 1.19271 0.92277 1.03444 1.02056 1.16261 0.86964 0.97696 0.94651 1.21369 0.95058 0.99036 0.96790 1.21051 0.93098 0.95312 0.98980 1.20171 0.91959 1.10042 0.96935 1.18255 0.87603 0.74532 0.73681 1.93232 1.77088 1.49701 1.96165 1.93193 1.92468 1.72675 1.57541 1.93194 1.96316 1.80810 1.45663 1.21081 0.95260 0.95594 0.96417 1.21404 0.92995 0.98586 0.99023 1.23196 0.86715 0.99158 0.97616 0.92526 0.77247 0.90208 0.91707 0.90683 0.91932 0.90544 0.87129 0.83682 0.82513 0.82196 0.82937 0.92154 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.48 13.96 21.45 0.30 -56.19 16 2 C 0.02 1.34 5.46 84.65 0.46 1.81 16 3 Si 1.01 48.51 24.91 68.60 1.71 50.21 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.34 -16.84 7.11 99.48 0.71 -16.13 16 6 H -0.26 -12.41 5.40 99.48 0.54 -11.88 16 7 C -0.55 -28.84 8.89 25.60 0.23 -28.62 16 8 H 0.04 2.60 8.00 -2.91 -0.02 2.57 16 9 C 0.21 9.11 0.70 -10.15 -0.01 9.10 16 10 O -0.56 -23.37 8.51 -148.98 -1.27 -24.64 16 11 C -0.15 -5.29 6.11 31.78 0.19 -5.10 16 12 C 0.06 1.68 6.41 86.65 0.55 2.24 16 13 N -0.54 -17.62 5.13 -896.63 -4.60 -22.23 16 14 C 0.15 3.98 5.04 84.50 0.43 4.40 16 15 C -0.12 -3.08 12.91 31.13 0.40 -2.68 16 16 C -0.17 -4.06 13.24 30.02 0.40 -3.66 16 17 C 0.04 0.86 5.72 -21.41 -0.12 0.74 16 18 C -0.10 -1.77 9.75 22.52 0.22 -1.55 16 19 C -0.07 -0.95 9.38 22.23 0.21 -0.74 16 20 C -0.19 -2.76 5.46 -19.82 -0.11 -2.87 16 21 C 0.51 7.57 3.36 71.23 0.24 7.81 16 22 F -0.18 -2.95 17.30 44.97 0.78 -2.17 16 23 F -0.18 -2.64 16.45 44.97 0.74 -1.90 16 24 F -0.18 -2.75 16.45 44.97 0.74 -2.01 16 25 C -0.07 -0.86 9.38 22.23 0.21 -0.66 16 26 C -0.10 -1.56 9.75 22.52 0.22 -1.34 16 27 C 0.06 2.36 5.65 86.77 0.49 2.85 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.38 13.70 8.98 -74.06 -0.67 13.04 16 30 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 31 H 0.06 2.31 7.99 -2.39 -0.02 2.29 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.67 7.30 -2.39 -0.02 1.65 16 34 H 0.08 1.83 7.96 -2.38 -0.02 1.81 16 35 H 0.11 2.64 8.07 -2.39 -0.02 2.62 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.16 1.63 7.59 -2.91 -0.02 1.61 16 38 H 0.16 1.38 7.59 -2.91 -0.02 1.36 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 41 H 0.07 2.77 6.58 -2.39 -0.02 2.75 16 Total: -1.00 -65.08 357.99 2.66 -62.42 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.25 Total: 14.75 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.01 Total: -18.25 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -4.30 Total: -78.41 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.27 Total: -24.64 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 2.26 Total: -6.09 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.71 Total: 50.21 kcal Total: -65.08 2.66 -62.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.375 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds