Wall clock time and date at job start Tue Mar 31 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99765 * 3 2 1 5 5 H 1.48495 * 109.47425 * 30.00256 * 3 2 1 6 6 H 1.48503 * 109.47121 * 150.00249 * 3 2 1 7 7 C 1.37874 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00106 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.88988 * 62.42077 * 9 7 2 11 11 C 1.55155 * 111.03860 * 186.33083 * 9 7 2 12 12 C 1.54327 * 102.94571 * 153.58728 * 11 9 7 13 13 N 1.47024 * 107.26774 * 337.80617 * 12 11 9 14 14 C 1.34780 * 125.64847 * 179.20685 * 13 12 11 15 15 O 1.21278 * 120.00386 * 179.69053 * 14 13 12 16 16 C 1.50707 * 119.99690 * 359.68630 * 14 13 12 17 17 S 1.81003 * 109.46956 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99789 * 180.02562 * 17 16 14 19 19 N 1.31547 * 126.45613 * 0.02562 * 18 17 16 20 20 N 1.28423 * 110.50136 * 180.02562 * 19 18 17 21 21 N 1.28909 * 110.34108 * 0.02562 * 20 19 18 22 22 N 1.35397 * 126.45348 * 179.71796 * 18 17 16 23 23 C 1.46504 * 127.38387 * 359.97438 * 22 18 17 24 24 C 1.52995 * 117.50236 * 188.62541 * 23 22 18 25 25 C 1.52993 * 117.50183 * 119.99929 * 23 22 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 13 12 11 27 27 H 0.96998 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96692 * 114.00320 * 297.57700 * 10 9 7 29 29 H 1.08999 * 110.71965 * 271.94694 * 11 9 7 30 30 H 1.09000 * 110.72417 * 35.04714 * 11 9 7 31 31 H 1.08995 * 109.88184 * 218.39040 * 12 11 9 32 32 H 1.09002 * 109.88385 * 97.22047 * 12 11 9 33 33 H 1.08997 * 109.47117 * 300.00376 * 16 14 13 34 34 H 1.09002 * 109.46743 * 60.00082 * 16 14 13 35 35 H 1.09004 * 115.54555 * 334.33182 * 23 22 18 36 36 H 1.09003 * 117.49792 * 359.97438 * 24 23 22 37 37 H 1.08999 * 117.50097 * 145.02176 * 24 23 22 38 38 H 1.08998 * 117.50133 * 214.98104 * 25 23 22 39 39 H 1.09010 * 117.49908 * 0.02562 * 25 23 22 40 40 H 1.09002 * 110.36518 * 142.96440 * 26 13 12 41 41 H 1.08997 * 110.36787 * 265.28818 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 2.2189 -3.7011 0.1609 12 6 1.3256 -4.7804 0.8080 13 7 0.2053 -4.0864 1.4599 14 6 -0.8057 -4.6793 2.1253 15 8 -1.6774 -4.0043 2.6307 16 6 -0.8530 -6.1812 2.2413 17 16 -2.3188 -6.6675 3.1854 18 6 -2.1271 -8.4189 3.1672 19 7 -1.1516 -9.0926 2.5972 20 7 -1.3147 -10.3544 2.7715 21 7 -2.3863 -10.5779 3.4524 22 7 -2.9532 -9.3245 3.7423 23 6 -4.1776 -9.0561 4.5006 24 6 -4.8327 -10.2339 5.2246 25 6 -5.4829 -9.6507 3.9684 26 6 0.3745 -2.6341 1.2707 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2245 -1.9564 -1.2760 29 1 2.5840 -4.0344 -0.8105 30 1 3.0508 -3.4418 0.8157 31 1 1.8971 -5.3392 1.5490 32 1 0.9470 -5.4567 0.0415 33 1 -0.8995 -6.6212 1.2451 34 1 0.0421 -6.5344 2.7531 35 1 -4.2285 -8.0786 4.9804 36 1 -4.3530 -11.2087 5.1364 37 1 -5.3149 -10.0317 6.1810 38 1 -6.3927 -9.0648 4.0984 39 1 -5.4307 -10.2421 3.0542 40 1 -0.5931 -2.1565 1.1164 41 1 0.8819 -2.1961 2.1301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:45 Heat of formation + Delta-G solvation = 70.205841 kcal Electronic energy + Delta-G solvation = -26443.154536 eV Core-core repulsion = 22488.501631 eV Total energy + Delta-G solvation = -3954.652904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.08078 -39.58299 -38.15820 -37.36229 -34.39790 -33.41580 -32.47506 -32.29859 -30.91351 -29.58641 -27.73840 -25.70938 -24.98158 -23.67794 -23.03459 -22.73115 -21.91087 -19.80343 -19.27223 -18.33290 -17.31831 -17.22040 -16.79657 -16.74092 -15.74336 -15.70591 -15.44735 -14.90205 -14.45193 -14.31673 -14.04868 -13.98355 -13.41105 -13.07501 -12.93168 -12.67996 -12.65009 -12.43926 -12.19297 -12.10675 -11.73339 -11.53682 -11.51731 -11.20351 -11.14135 -11.09230 -10.93836 -10.88097 -10.70205 -10.52229 -10.30043 -10.27779 -9.72400 -9.45468 -8.76356 -8.47464 -8.22064 -7.96794 -6.34245 -4.43986 0.44365 0.59137 1.56395 1.68223 1.98477 2.81463 2.98872 3.16942 3.25184 3.27188 3.41822 3.69038 4.05228 4.17674 4.21486 4.33687 4.59485 4.83971 4.87380 4.93527 4.99057 5.06570 5.09974 5.21557 5.31033 5.33483 5.45630 5.57643 5.70111 5.82196 5.94600 6.03552 6.40782 6.63689 6.74202 6.78759 7.14336 7.25255 7.67667 7.93106 7.97815 8.17003 8.38192 8.60217 9.22622 9.31359 10.72893 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.002322 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.014907 B =12057.622589 C =12698.410705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.598 5.598 14 C 0.538 3.462 15 O -0.540 6.540 16 C -0.146 4.146 17 S 0.118 5.882 18 C 0.205 3.795 19 N -0.337 5.337 20 N -0.032 5.032 21 N -0.088 5.088 22 N -0.337 5.337 23 C 0.057 3.943 24 C -0.155 4.155 25 C -0.164 4.164 26 C 0.095 3.905 27 H 0.271 0.729 28 H 0.382 0.618 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 -15.567 8.804 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.156 4.156 12 C -0.024 4.024 13 N -0.330 5.330 14 C 0.323 3.677 15 O -0.419 6.419 16 C -0.298 4.298 17 S 0.342 5.658 18 C -0.179 4.179 19 N -0.194 5.194 20 N -0.027 5.027 21 N -0.075 5.075 22 N -0.135 5.135 23 C -0.047 4.047 24 C -0.193 4.193 25 C -0.203 4.203 26 C -0.026 4.026 27 H 0.081 0.919 28 H 0.231 0.769 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.176 0.824 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.453 -16.174 9.141 20.411 hybrid contribution 0.554 1.174 -0.142 1.305 sum -7.899 -15.001 9.000 19.194 Atomic orbital electron populations 1.69703 1.05993 1.28007 1.49411 1.25081 0.95058 0.99817 0.93274 0.86394 0.79770 0.82357 0.78350 1.20361 1.21001 1.19679 1.21447 0.93691 0.89942 1.52548 0.91433 1.19637 0.86588 0.91752 0.81242 1.86114 1.51571 1.57132 1.44251 1.22626 0.97537 0.94979 1.00413 1.22135 0.88020 0.96148 0.96133 1.48674 1.22691 1.10382 1.51278 1.18966 0.82024 0.87084 0.79596 1.90731 1.37821 1.64940 1.48428 1.23920 1.00827 0.98988 1.06079 1.86487 1.31129 0.81321 1.66821 1.28297 0.91143 1.02212 0.96203 1.74984 1.21867 0.98248 1.24275 1.77843 1.08300 1.08487 1.08114 1.82405 1.06603 1.01043 1.17468 1.50920 1.20080 1.03767 1.38702 1.22249 0.80355 1.01091 1.00964 1.23417 1.01171 0.97267 0.97435 1.23544 0.94651 1.02940 0.99140 1.23399 1.03076 0.75837 1.00271 0.91937 0.76854 0.90488 0.90191 0.92151 0.91671 0.85403 0.85553 0.82395 0.86756 0.86382 0.86195 0.87550 0.89207 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.95 10.69 55.43 0.59 -22.35 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.39 8.27 -34.44 -0.28 -13.68 16 8 H 0.07 1.65 7.79 -52.49 -0.41 1.24 16 9 C 0.25 5.67 0.87 -89.62 -0.08 5.59 16 10 O -0.58 -14.10 13.16 -35.23 -0.46 -14.56 16 11 C -0.12 -2.17 6.13 -24.90 -0.15 -2.33 16 12 C 0.10 1.58 6.49 -3.06 -0.02 1.56 16 13 N -0.60 -11.24 3.33 -170.51 -0.57 -11.80 16 14 C 0.54 9.55 7.87 -10.98 -0.09 9.47 16 15 O -0.54 -11.27 16.12 5.56 0.09 -11.18 16 16 C -0.15 -1.95 4.91 36.01 0.18 -1.77 16 17 S 0.12 1.45 21.10 -107.50 -2.27 -0.82 16 18 C 0.21 2.62 8.15 -89.17 -0.73 1.89 16 19 N -0.34 -4.93 11.57 30.50 0.35 -4.57 16 20 N -0.03 -0.48 13.38 60.35 0.81 0.33 16 21 N -0.09 -1.18 13.45 60.35 0.81 -0.37 16 22 N -0.34 -3.86 4.01 -54.80 -0.22 -4.08 16 23 C 0.06 0.43 6.73 -67.93 -0.46 -0.03 16 24 C -0.16 -0.83 10.22 -26.73 -0.27 -1.10 16 25 C -0.16 -0.92 10.46 -26.74 -0.28 -1.19 16 26 C 0.10 2.14 5.38 -2.53 -0.01 2.12 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.38 9.52 7.56 45.56 0.34 9.87 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.13 1.49 8.14 -51.91 -0.42 1.07 16 35 H 0.16 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.11 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 41 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -30.07 366.61 -7.28 -37.35 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.63 Total: 9.59 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.29 Total: 2.23 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 1.78 Total: -42.85 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.37 Total: -25.75 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.27 Total: -0.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.07 -7.28 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.556 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds