Wall clock time and date at job start Tue Mar 31 2020 22:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99765 * 3 2 1 5 5 H 1.48495 * 109.47425 * 30.00256 * 3 2 1 6 6 H 1.48503 * 109.47121 * 150.00249 * 3 2 1 7 7 C 1.37874 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00106 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.88988 * 62.42077 * 9 7 2 11 11 C 1.55155 * 111.03860 * 186.33083 * 9 7 2 12 12 C 1.54327 * 102.94571 * 153.58728 * 11 9 7 13 13 N 1.47024 * 107.26774 * 337.80617 * 12 11 9 14 14 C 1.34780 * 125.64847 * 179.20685 * 13 12 11 15 15 O 1.21278 * 120.00386 * 179.69053 * 14 13 12 16 16 C 1.50707 * 119.99690 * 359.68630 * 14 13 12 17 17 S 1.81003 * 109.46956 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99789 * 180.02562 * 17 16 14 19 19 N 1.31547 * 126.45613 * 0.02562 * 18 17 16 20 20 N 1.28423 * 110.50136 * 180.02562 * 19 18 17 21 21 N 1.28909 * 110.34108 * 0.02562 * 20 19 18 22 22 N 1.35397 * 126.45348 * 179.71796 * 18 17 16 23 23 C 1.46504 * 127.38387 * 359.97438 * 22 18 17 24 24 C 1.52995 * 117.50236 * 188.62541 * 23 22 18 25 25 C 1.52993 * 117.50183 * 119.99929 * 23 22 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 13 12 11 27 27 H 0.96998 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96692 * 114.00320 * 297.57700 * 10 9 7 29 29 H 1.08999 * 110.71965 * 271.94694 * 11 9 7 30 30 H 1.09000 * 110.72417 * 35.04714 * 11 9 7 31 31 H 1.08995 * 109.88184 * 218.39040 * 12 11 9 32 32 H 1.09002 * 109.88385 * 97.22047 * 12 11 9 33 33 H 1.08997 * 109.47117 * 300.00376 * 16 14 13 34 34 H 1.09002 * 109.46743 * 60.00082 * 16 14 13 35 35 H 1.09004 * 115.54555 * 334.33182 * 23 22 18 36 36 H 1.09003 * 117.49792 * 359.97438 * 24 23 22 37 37 H 1.08999 * 117.50097 * 145.02176 * 24 23 22 38 38 H 1.08998 * 117.50133 * 214.98104 * 25 23 22 39 39 H 1.09010 * 117.49908 * 0.02562 * 25 23 22 40 40 H 1.09002 * 110.36518 * 142.96440 * 26 13 12 41 41 H 1.08997 * 110.36787 * 265.28818 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 2.2189 -3.7011 0.1609 12 6 1.3256 -4.7804 0.8080 13 7 0.2053 -4.0864 1.4599 14 6 -0.8057 -4.6793 2.1253 15 8 -1.6774 -4.0043 2.6307 16 6 -0.8530 -6.1812 2.2413 17 16 -2.3188 -6.6675 3.1854 18 6 -2.1271 -8.4189 3.1672 19 7 -1.1516 -9.0926 2.5972 20 7 -1.3147 -10.3544 2.7715 21 7 -2.3863 -10.5779 3.4524 22 7 -2.9532 -9.3245 3.7423 23 6 -4.1776 -9.0561 4.5006 24 6 -4.8327 -10.2339 5.2246 25 6 -5.4829 -9.6507 3.9684 26 6 0.3745 -2.6341 1.2707 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2245 -1.9564 -1.2760 29 1 2.5840 -4.0344 -0.8105 30 1 3.0508 -3.4418 0.8157 31 1 1.8971 -5.3392 1.5490 32 1 0.9470 -5.4567 0.0415 33 1 -0.8995 -6.6212 1.2451 34 1 0.0421 -6.5344 2.7531 35 1 -4.2285 -8.0786 4.9804 36 1 -4.3530 -11.2087 5.1364 37 1 -5.3149 -10.0317 6.1810 38 1 -6.3927 -9.0648 4.0984 39 1 -5.4307 -10.2421 3.0542 40 1 -0.5931 -2.1565 1.1164 41 1 0.8819 -2.1961 2.1301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:44 Heat of formation + Delta-G solvation = 49.108963 kcal Electronic energy + Delta-G solvation = -26444.069365 eV Core-core repulsion = 22488.501631 eV Total energy + Delta-G solvation = -3955.567734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.05869 -41.08567 -38.99213 -38.72508 -36.09486 -34.26105 -34.22351 -33.48891 -32.35943 -30.94812 -29.37653 -26.93300 -26.42036 -24.61223 -24.21797 -23.48054 -22.70649 -21.50049 -20.54459 -19.36199 -19.08325 -18.20742 -18.07873 -17.74800 -17.22150 -17.05854 -16.56245 -16.21201 -15.92955 -15.57644 -15.37602 -14.81752 -14.68603 -14.64738 -14.22248 -14.03392 -13.62836 -13.56198 -13.49967 -13.25762 -13.22620 -12.84374 -12.61835 -12.53928 -12.42953 -12.33364 -12.23029 -12.13829 -12.05504 -11.92256 -11.71238 -11.23565 -11.16054 -10.99627 -10.65363 -10.30441 -9.56407 -9.15721 -8.24312 -6.40635 -0.54601 -0.34942 0.54233 0.88731 0.94905 1.41517 1.43525 1.45810 1.54381 2.01573 2.39488 2.48074 3.02181 3.03180 3.26411 3.43970 3.62502 3.72738 3.79990 3.84565 4.02643 4.10513 4.18594 4.19961 4.23529 4.37771 4.45156 4.62716 4.68900 4.75738 4.88889 5.04972 5.05646 5.11000 5.11282 5.24521 5.40167 5.47769 5.76834 6.08128 6.51601 6.67563 6.94978 7.16069 7.28796 7.36368 8.80779 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.002322 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.014907 B =12057.622589 C =12698.410705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.100 3.900 13 N -0.604 5.604 14 C 0.536 3.464 15 O -0.578 6.578 16 C -0.140 4.140 17 S 0.136 5.864 18 C 0.200 3.800 19 N -0.353 5.353 20 N -0.057 5.057 21 N -0.094 5.094 22 N -0.326 5.326 23 C 0.024 3.976 24 C -0.141 4.141 25 C -0.154 4.154 26 C 0.110 3.890 27 H 0.269 0.731 28 H 0.373 0.627 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.177 0.823 36 H 0.101 0.899 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -16.804 9.732 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.190 3.810 10 O -0.395 6.395 11 C -0.152 4.152 12 C -0.022 4.022 13 N -0.335 5.335 14 C 0.324 3.676 15 O -0.459 6.459 16 C -0.291 4.291 17 S 0.360 5.640 18 C -0.184 4.184 19 N -0.210 5.210 20 N -0.052 5.052 21 N -0.081 5.081 22 N -0.124 5.124 23 C -0.078 4.078 24 C -0.179 4.179 25 C -0.192 4.192 26 C -0.013 4.013 27 H 0.078 0.922 28 H 0.222 0.778 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.194 0.806 36 H 0.119 0.881 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.436 -17.453 10.071 21.845 hybrid contribution 0.454 1.545 -0.387 1.656 sum -7.983 -15.908 9.684 20.263 Atomic orbital electron populations 1.69819 1.07041 1.28367 1.50086 1.25783 0.95742 1.02675 0.93157 0.85506 0.78781 0.78892 0.78166 1.20262 1.21186 1.18996 1.21789 0.93952 0.91226 1.52331 0.91387 1.19879 0.87239 0.93147 0.80697 1.86107 1.51474 1.56735 1.45172 1.22635 0.97299 0.93755 1.01468 1.22312 0.87051 0.95391 0.97401 1.48674 1.23988 1.09031 1.51835 1.19595 0.80871 0.88830 0.78338 1.90711 1.39064 1.66388 1.49771 1.23799 1.02596 0.95181 1.07551 1.86502 1.30284 0.80694 1.66494 1.28276 0.91312 1.02363 0.96465 1.74882 1.22847 0.98313 1.24987 1.77822 1.09203 1.08895 1.09285 1.82324 1.06386 1.02090 1.17304 1.51182 1.20543 1.02815 1.37852 1.22872 0.79662 1.02954 1.02314 1.23537 1.00010 0.95671 0.98688 1.23647 0.94431 1.02453 0.98714 1.22878 1.00680 0.78171 0.99586 0.92172 0.77826 0.89707 0.89137 0.88254 0.90047 0.84047 0.83364 0.80618 0.88053 0.83456 0.83560 0.88953 0.92979 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.26 10.69 21.45 0.23 -48.03 16 2 C 0.03 1.40 5.29 84.65 0.45 1.84 16 3 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 4 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.55 -27.77 8.27 25.60 0.21 -27.56 16 8 H 0.07 3.31 7.79 -2.91 -0.02 3.29 16 9 C 0.23 10.56 0.87 -10.15 -0.01 10.56 16 10 O -0.59 -28.81 13.16 -148.98 -1.96 -30.78 16 11 C -0.11 -4.01 6.13 31.78 0.19 -3.82 16 12 C 0.10 2.95 6.49 86.73 0.56 3.51 16 13 N -0.60 -22.15 3.33 -811.77 -2.70 -24.85 16 14 C 0.54 18.55 7.87 87.66 0.69 19.24 16 15 O -0.58 -24.23 16.12 -3.02 -0.05 -24.28 16 16 C -0.14 -3.44 4.91 71.24 0.35 -3.09 16 17 S 0.14 3.11 21.10 -56.49 -1.19 1.92 16 18 C 0.20 4.80 8.15 179.84 1.47 6.26 16 19 N -0.35 -9.85 11.57 -57.41 -0.66 -10.51 16 20 N -0.06 -1.66 13.38 37.02 0.50 -1.17 16 21 N -0.09 -2.43 13.45 37.02 0.50 -1.93 16 22 N -0.33 -7.01 4.01 -327.30 -1.31 -8.32 16 23 C 0.02 0.31 6.73 44.99 0.30 0.61 16 24 C -0.14 -1.17 10.22 30.59 0.31 -0.85 16 25 C -0.15 -1.35 10.46 30.59 0.32 -1.03 16 26 C 0.11 5.02 5.38 86.86 0.47 5.49 16 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.37 19.28 7.56 -74.06 -0.56 18.72 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 2.96 8.03 -2.39 -0.02 2.94 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.14 3.16 8.14 -2.40 -0.02 3.14 16 34 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.18 1.57 8.08 -2.38 -0.02 1.55 16 36 H 0.10 1.16 7.91 -2.39 -0.02 1.14 16 37 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.05 2.76 7.33 -2.39 -0.02 2.74 16 41 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 Total: -1.00 -66.86 366.61 1.20 -65.66 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.52 Total: 28.39 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.32 Total: 11.17 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.46 Total: -94.82 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -2.01 Total: -55.06 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.19 Total: 1.92 kcal Total: -66.86 1.20 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.769 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds