Wall clock time and date at job start Tue Mar 31 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47271 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00004 * 3 2 1 7 7 C 1.37877 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64142 * 298.31333 * 9 7 2 11 11 C 1.55154 * 110.71804 * 174.97658 * 9 7 2 12 12 C 1.54910 * 101.58031 * 206.13347 * 11 9 7 13 13 N 1.47426 * 104.83209 * 37.01037 * 12 11 9 14 14 C 1.34775 * 125.64777 * 155.89013 * 13 12 11 15 15 O 1.21276 * 120.00034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99931 * 359.97438 * 14 13 12 17 17 S 1.81002 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99831 * 179.97438 * 17 16 14 19 19 N 1.31541 * 126.45507 * 0.02850 * 18 17 16 20 20 N 1.28421 * 110.50298 * 179.97438 * 19 18 17 21 21 N 1.28904 * 110.33862 * 359.97438 * 20 19 18 22 22 N 1.35403 * 126.44953 * 179.70882 * 18 17 16 23 23 C 1.46501 * 127.38669 * 359.97438 * 22 18 17 24 24 C 1.52995 * 117.49760 * 188.74148 * 23 22 18 25 25 C 1.52992 * 117.49809 * 120.08033 * 23 22 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 13 12 11 27 27 H 0.97001 * 119.99663 * 0.02562 * 1 2 3 28 28 H 0.96694 * 114.00195 * 61.68649 * 10 9 7 29 29 H 1.09002 * 111.00945 * 88.06154 * 11 9 7 30 30 H 1.08999 * 111.00353 * 324.20692 * 11 9 7 31 31 H 1.08998 * 110.36709 * 278.17139 * 12 11 9 32 32 H 1.09005 * 110.36466 * 155.84673 * 12 11 9 33 33 H 1.09002 * 109.46910 * 299.99521 * 16 14 13 34 34 H 1.08995 * 109.47630 * 59.99841 * 16 14 13 35 35 H 1.09006 * 115.54603 * 334.41223 * 23 22 18 36 36 H 1.09000 * 117.50328 * 359.97438 * 24 23 22 37 37 H 1.09000 * 117.49503 * 145.01682 * 24 23 22 38 38 H 1.09006 * 117.49678 * 214.97483 * 25 23 22 39 39 H 1.08998 * 117.50319 * 359.97438 * 25 23 22 40 40 H 1.09001 * 109.88389 * 120.48020 * 26 13 12 41 41 H 1.09003 * 109.87977 * 241.64361 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2284 -3.6973 -0.1283 12 6 1.3204 -4.7716 -0.7773 13 7 0.4640 -4.0245 -1.7164 14 6 -0.1419 -4.5379 -2.8053 15 8 -0.8270 -3.8271 -3.5097 16 6 0.0319 -5.9953 -3.1475 17 16 -0.8988 -6.3767 -4.6524 18 6 -0.5278 -8.0916 -4.8150 19 7 0.2280 -8.8074 -4.0109 20 7 0.2903 -10.0242 -4.4169 21 7 -0.4079 -10.1747 -5.4900 22 7 -0.9719 -8.9219 -5.7880 23 6 -1.8507 -8.5864 -6.9111 24 6 -2.3780 -9.7413 -7.7649 25 6 -1.3054 -8.8032 -8.3240 26 6 0.3802 -2.6268 -1.2682 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2277 -1.9344 1.2627 29 1 2.5787 -4.0221 0.8515 30 1 3.0671 -3.4497 -0.7789 31 1 0.7121 -5.2631 -0.0181 32 1 1.9234 -5.5039 -1.3142 33 1 1.0887 -6.2068 -3.3100 34 1 -0.3392 -6.6082 -2.3261 35 1 -2.5125 -7.7350 -6.7521 36 1 -2.0708 -10.7507 -7.4913 37 1 -3.3866 -9.6495 -8.1679 38 1 -1.6089 -8.0946 -9.0948 39 1 -0.2927 -9.1950 -8.4181 40 1 0.7591 -1.9645 -2.0466 41 1 -0.6540 -2.3739 -1.0345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:48 Heat of formation + Delta-G solvation = 70.020584 kcal Electronic energy + Delta-G solvation = -26405.595351 eV Core-core repulsion = 22450.934413 eV Total energy + Delta-G solvation = -3954.660938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.09466 -39.60987 -38.16575 -37.40410 -34.44741 -33.42698 -32.48969 -32.29757 -30.89370 -29.58975 -27.74299 -25.72119 -24.97560 -23.69089 -23.04979 -22.77158 -21.92781 -19.80864 -19.28031 -18.35687 -17.31637 -17.25710 -16.80850 -16.74646 -15.89881 -15.67634 -15.45380 -14.88500 -14.47911 -14.32177 -14.05862 -13.83301 -13.39213 -13.11736 -12.94159 -12.73355 -12.66981 -12.45032 -12.20656 -12.16220 -11.75838 -11.54755 -11.51681 -11.21445 -11.15441 -11.13094 -10.94352 -10.88417 -10.74864 -10.51852 -10.31331 -10.25727 -9.74598 -9.40948 -8.75108 -8.40523 -8.25814 -8.07522 -6.35307 -4.43884 0.42586 0.57759 1.54330 1.66811 1.97157 2.78776 2.97724 3.16047 3.25561 3.28729 3.38796 3.67796 4.03977 4.16526 4.21837 4.32237 4.56019 4.82768 4.85302 4.93187 4.98077 5.05214 5.08633 5.18187 5.29224 5.32354 5.44523 5.62009 5.70499 5.80959 5.93224 6.00194 6.39825 6.65046 6.74485 6.77002 7.15139 7.26308 7.66393 7.89642 7.98235 8.15695 8.35778 8.60448 9.21734 9.31072 10.72530 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.002332 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.198398 B =12006.548912 C =12633.474882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.095 3.905 13 N -0.600 5.600 14 C 0.537 3.463 15 O -0.540 6.540 16 C -0.146 4.146 17 S 0.118 5.882 18 C 0.205 3.795 19 N -0.337 5.337 20 N -0.032 5.032 21 N -0.088 5.088 22 N -0.337 5.337 23 C 0.057 3.943 24 C -0.155 4.155 25 C -0.164 4.164 26 C 0.104 3.896 27 H 0.270 0.730 28 H 0.383 0.617 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -14.931 -12.945 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.155 4.155 12 C -0.028 4.028 13 N -0.332 5.332 14 C 0.322 3.678 15 O -0.419 6.419 16 C -0.298 4.298 17 S 0.342 5.658 18 C -0.179 4.179 19 N -0.194 5.194 20 N -0.027 5.027 21 N -0.075 5.075 22 N -0.135 5.135 23 C -0.047 4.047 24 C -0.193 4.193 25 C -0.203 4.203 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.080 -15.489 -13.505 20.951 hybrid contribution 0.334 1.189 0.295 1.269 sum -3.746 -14.301 -13.210 19.825 Atomic orbital electron populations 1.69697 1.05996 1.27916 1.49660 1.25081 0.95070 0.99841 0.93320 0.86343 0.80083 0.82675 0.77795 1.19560 1.20759 1.20708 1.21532 0.93752 0.89975 1.52293 0.91391 1.19515 0.86497 0.92208 0.81076 1.86112 1.51833 1.56611 1.44733 1.22758 0.97401 0.94893 1.00469 1.22471 0.92896 0.95322 0.92077 1.48711 1.47196 1.13401 1.23920 1.18985 0.80713 0.86966 0.81143 1.90731 1.40272 1.60742 1.50153 1.23918 1.06136 0.99909 0.99868 1.86493 1.60456 0.86883 1.31929 1.28291 0.97010 1.02637 0.89928 1.74979 1.20908 0.98335 1.25153 1.77843 1.11358 1.10086 1.03436 1.82407 1.11837 1.00306 1.12941 1.50924 1.35760 1.06207 1.20568 1.22253 0.97112 1.03457 0.81838 1.23429 1.00175 0.95938 0.99740 1.23553 1.00361 1.02869 0.93496 1.23138 1.02077 0.77502 0.98994 0.91993 0.76680 0.90246 0.90279 0.91120 0.91508 0.85422 0.85451 0.82395 0.86746 0.86369 0.86205 0.87556 0.91097 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 10.97 55.43 0.61 -22.35 16 2 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 3 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.45 8.12 -34.44 -0.28 -13.73 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.65 0.85 -89.94 -0.08 5.57 16 10 O -0.58 -13.95 13.08 -35.23 -0.46 -14.42 16 11 C -0.12 -2.17 6.23 -24.58 -0.15 -2.32 16 12 C 0.10 1.52 6.68 -2.53 -0.02 1.50 16 13 N -0.60 -11.20 3.33 -170.52 -0.57 -11.77 16 14 C 0.54 9.41 7.87 -10.98 -0.09 9.32 16 15 O -0.54 -11.17 16.19 5.56 0.09 -11.08 16 16 C -0.15 -1.91 4.72 36.01 0.17 -1.74 16 17 S 0.12 1.42 21.10 -107.50 -2.27 -0.85 16 18 C 0.21 2.58 8.15 -89.17 -0.73 1.85 16 19 N -0.34 -4.86 11.57 30.50 0.35 -4.51 16 20 N -0.03 -0.47 13.38 60.35 0.81 0.34 16 21 N -0.09 -1.16 13.45 60.35 0.81 -0.35 16 22 N -0.34 -3.81 4.01 -54.80 -0.22 -4.03 16 23 C 0.06 0.42 6.73 -67.94 -0.46 -0.04 16 24 C -0.16 -0.82 10.23 -26.70 -0.27 -1.09 16 25 C -0.16 -0.89 10.46 -26.70 -0.28 -1.17 16 26 C 0.10 2.35 5.24 -3.07 -0.02 2.34 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.38 9.39 7.45 45.56 0.34 9.73 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 33 H 0.13 1.49 7.85 -51.92 -0.41 1.08 16 34 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 35 H 0.16 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.11 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 41 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -30.12 365.96 -7.24 -37.36 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.60 Total: 9.11 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.29 Total: 2.17 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 1.79 Total: -42.68 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.37 Total: -25.50 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.27 Total: -0.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.12 -7.24 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.385 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds