Wall clock time and date at job start Tue Mar 31 2020 22:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47271 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00004 * 3 2 1 7 7 C 1.37877 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64142 * 298.31333 * 9 7 2 11 11 C 1.55154 * 110.71804 * 174.97658 * 9 7 2 12 12 C 1.54910 * 101.58031 * 206.13347 * 11 9 7 13 13 N 1.47426 * 104.83209 * 37.01037 * 12 11 9 14 14 C 1.34775 * 125.64777 * 155.89013 * 13 12 11 15 15 O 1.21276 * 120.00034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99931 * 359.97438 * 14 13 12 17 17 S 1.81002 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99831 * 179.97438 * 17 16 14 19 19 N 1.31541 * 126.45507 * 0.02850 * 18 17 16 20 20 N 1.28421 * 110.50298 * 179.97438 * 19 18 17 21 21 N 1.28904 * 110.33862 * 359.97438 * 20 19 18 22 22 N 1.35403 * 126.44953 * 179.70882 * 18 17 16 23 23 C 1.46501 * 127.38669 * 359.97438 * 22 18 17 24 24 C 1.52995 * 117.49760 * 188.74148 * 23 22 18 25 25 C 1.52992 * 117.49809 * 120.08033 * 23 22 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 13 12 11 27 27 H 0.97001 * 119.99663 * 0.02562 * 1 2 3 28 28 H 0.96694 * 114.00195 * 61.68649 * 10 9 7 29 29 H 1.09002 * 111.00945 * 88.06154 * 11 9 7 30 30 H 1.08999 * 111.00353 * 324.20692 * 11 9 7 31 31 H 1.08998 * 110.36709 * 278.17139 * 12 11 9 32 32 H 1.09005 * 110.36466 * 155.84673 * 12 11 9 33 33 H 1.09002 * 109.46910 * 299.99521 * 16 14 13 34 34 H 1.08995 * 109.47630 * 59.99841 * 16 14 13 35 35 H 1.09006 * 115.54603 * 334.41223 * 23 22 18 36 36 H 1.09000 * 117.50328 * 359.97438 * 24 23 22 37 37 H 1.09000 * 117.49503 * 145.01682 * 24 23 22 38 38 H 1.09006 * 117.49678 * 214.97483 * 25 23 22 39 39 H 1.08998 * 117.50319 * 359.97438 * 25 23 22 40 40 H 1.09001 * 109.88389 * 120.48020 * 26 13 12 41 41 H 1.09003 * 109.87977 * 241.64361 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2284 -3.6973 -0.1283 12 6 1.3204 -4.7716 -0.7773 13 7 0.4640 -4.0245 -1.7164 14 6 -0.1419 -4.5379 -2.8053 15 8 -0.8270 -3.8271 -3.5097 16 6 0.0319 -5.9953 -3.1475 17 16 -0.8988 -6.3767 -4.6524 18 6 -0.5278 -8.0916 -4.8150 19 7 0.2280 -8.8074 -4.0109 20 7 0.2903 -10.0242 -4.4169 21 7 -0.4079 -10.1747 -5.4900 22 7 -0.9719 -8.9219 -5.7880 23 6 -1.8507 -8.5864 -6.9111 24 6 -2.3780 -9.7413 -7.7649 25 6 -1.3054 -8.8032 -8.3240 26 6 0.3802 -2.6268 -1.2682 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2277 -1.9344 1.2627 29 1 2.5787 -4.0221 0.8515 30 1 3.0671 -3.4497 -0.7789 31 1 0.7121 -5.2631 -0.0181 32 1 1.9234 -5.5039 -1.3142 33 1 1.0887 -6.2068 -3.3100 34 1 -0.3392 -6.6082 -2.3261 35 1 -2.5125 -7.7350 -6.7521 36 1 -2.0708 -10.7507 -7.4913 37 1 -3.3866 -9.6495 -8.1679 38 1 -1.6089 -8.0946 -9.0948 39 1 -0.2927 -9.1950 -8.4181 40 1 0.7591 -1.9645 -2.0466 41 1 -0.6540 -2.3739 -1.0345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:47 Heat of formation + Delta-G solvation = 48.809082 kcal Electronic energy + Delta-G solvation = -26406.515151 eV Core-core repulsion = 22450.934413 eV Total energy + Delta-G solvation = -3955.580737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.05655 -41.11408 -39.03763 -38.72056 -36.13904 -34.25716 -34.22678 -33.48726 -32.32379 -30.96397 -29.39198 -26.93681 -26.41773 -24.61000 -24.26090 -23.48359 -22.70944 -21.49372 -20.57679 -19.35053 -19.11610 -18.21552 -18.08518 -17.74102 -17.42712 -16.94502 -16.54476 -16.21643 -15.93316 -15.57486 -15.25496 -14.77945 -14.75489 -14.67895 -14.27263 -14.10388 -13.64271 -13.56069 -13.50300 -13.27962 -13.22645 -12.87754 -12.61742 -12.54373 -12.43073 -12.33678 -12.24965 -12.13502 -12.06237 -11.91116 -11.70802 -11.22454 -11.16636 -10.99533 -10.65440 -10.27952 -9.67585 -9.15780 -8.26621 -6.41633 -0.54801 -0.34708 0.53952 0.88803 0.95241 1.40175 1.40244 1.44564 1.54294 1.98576 2.38346 2.48192 3.00371 3.03118 3.24411 3.43923 3.62583 3.72775 3.79974 3.84974 4.02922 4.08450 4.18580 4.19958 4.22530 4.39551 4.45245 4.62880 4.65211 4.71297 4.89039 5.02409 5.05736 5.11184 5.13033 5.19348 5.37615 5.50090 5.74840 6.06345 6.49867 6.65924 6.92833 7.16359 7.28220 7.35832 8.79473 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.002332 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.198398 B =12006.548912 C =12633.474882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.100 3.900 13 N -0.605 5.605 14 C 0.536 3.464 15 O -0.577 6.577 16 C -0.141 4.141 17 S 0.135 5.865 18 C 0.200 3.800 19 N -0.352 5.352 20 N -0.056 5.056 21 N -0.094 5.094 22 N -0.326 5.326 23 C 0.024 3.976 24 C -0.143 4.143 25 C -0.153 4.153 26 C 0.122 3.878 27 H 0.270 0.730 28 H 0.375 0.625 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -16.173 -14.115 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.085 0.915 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.151 4.151 12 C -0.022 4.022 13 N -0.337 5.337 14 C 0.324 3.676 15 O -0.459 6.459 16 C -0.292 4.292 17 S 0.360 5.640 18 C -0.184 4.184 19 N -0.210 5.210 20 N -0.052 5.052 21 N -0.081 5.081 22 N -0.124 5.124 23 C -0.078 4.078 24 C -0.180 4.180 25 C -0.191 4.191 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.225 0.775 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.193 0.807 36 H 0.119 0.881 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.760 -16.771 -14.682 22.605 hybrid contribution 0.171 1.571 0.562 1.677 sum -3.589 -15.201 -14.120 21.055 Atomic orbital electron populations 1.69797 1.06979 1.28363 1.50225 1.25776 0.95793 1.02663 0.93205 0.85468 0.79185 0.79265 0.77494 1.18984 1.20957 1.20507 1.21864 0.93934 0.91355 1.52178 0.91541 1.19737 0.87118 0.93523 0.80536 1.86103 1.51743 1.56227 1.45433 1.22761 0.97044 0.93720 1.01614 1.22623 0.92542 0.94879 0.92138 1.48705 1.48073 1.12079 1.24886 1.19642 0.79403 0.88588 0.79985 1.90713 1.41669 1.62292 1.51197 1.23809 1.07853 0.96259 1.01260 1.86520 1.60142 0.86282 1.31062 1.28271 0.97133 1.02737 0.90258 1.74876 1.21669 0.98430 1.26004 1.77822 1.12512 1.10576 1.04275 1.82328 1.11842 1.01335 1.12619 1.51183 1.35132 1.05244 1.20839 1.22869 0.97928 1.05388 0.81609 1.23548 1.01619 0.94601 0.98246 1.23655 0.99853 1.03122 0.92501 1.22570 0.99765 0.79612 0.98133 0.92108 0.77539 0.89170 0.89603 0.90221 0.87146 0.83338 0.83673 0.80661 0.88063 0.83512 0.83555 0.88887 0.94258 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.25 10.97 21.45 0.24 -48.01 16 2 C 0.03 1.36 5.28 84.65 0.45 1.80 16 3 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.56 -28.07 8.12 25.60 0.21 -27.86 16 8 H 0.07 3.29 7.78 -2.91 -0.02 3.27 16 9 C 0.23 10.61 0.85 -10.35 -0.01 10.60 16 10 O -0.59 -28.40 13.08 -148.98 -1.95 -30.35 16 11 C -0.11 -4.02 6.23 31.99 0.20 -3.82 16 12 C 0.10 2.93 6.68 86.86 0.58 3.51 16 13 N -0.61 -22.14 3.33 -811.79 -2.70 -24.84 16 14 C 0.54 18.26 7.87 87.66 0.69 18.95 16 15 O -0.58 -23.94 16.19 -3.02 -0.05 -23.99 16 16 C -0.14 -3.34 4.72 71.24 0.34 -3.00 16 17 S 0.14 3.02 21.10 -56.49 -1.19 1.83 16 18 C 0.20 4.69 8.15 179.84 1.47 6.16 16 19 N -0.35 -9.63 11.57 -57.41 -0.66 -10.30 16 20 N -0.06 -1.63 13.38 37.02 0.50 -1.14 16 21 N -0.09 -2.40 13.45 37.02 0.50 -1.90 16 22 N -0.33 -6.87 4.01 -327.30 -1.31 -8.19 16 23 C 0.02 0.30 6.73 44.99 0.30 0.61 16 24 C -0.14 -1.15 10.23 30.62 0.31 -0.83 16 25 C -0.15 -1.27 10.46 30.62 0.32 -0.95 16 26 C 0.12 5.67 5.24 86.73 0.45 6.13 16 27 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.38 19.04 7.45 -74.06 -0.55 18.49 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.09 2.90 8.04 -2.39 -0.02 2.88 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 2.34 7.48 -2.38 -0.02 2.32 16 33 H 0.15 2.97 7.85 -2.39 -0.02 2.96 16 34 H 0.15 3.01 8.14 -2.40 -0.02 2.99 16 35 H 0.18 1.52 8.08 -2.38 -0.02 1.50 16 36 H 0.10 1.14 7.91 -2.39 -0.02 1.12 16 37 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.15 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 2.03 7.81 -2.39 -0.02 2.01 16 41 H 0.04 1.93 7.92 -2.39 -0.02 1.91 16 Total: -1.00 -67.23 365.96 1.22 -66.01 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.53 Total: 26.49 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.31 Total: 11.28 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.45 Total: -94.37 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.00 Total: -54.34 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.19 Total: 1.83 kcal Total: -67.23 1.22 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.820 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds