Wall clock time and date at job start Tue Mar 31 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48505 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46888 * 300.00093 * 3 2 1 6 6 H 1.48501 * 109.46997 * 60.00038 * 3 2 1 7 7 C 1.38810 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00232 * 168.66335 * 7 2 1 9 9 N 1.36939 * 119.99928 * 348.93705 * 7 2 1 10 10 C 1.46961 * 120.59606 * 147.29005 * 9 7 2 11 11 C 1.53807 * 108.39802 * 124.75787 * 10 9 7 12 12 N 1.46969 * 108.57737 * 49.64239 * 11 10 9 13 13 C 1.34772 * 120.59491 * 124.62606 * 12 11 10 14 14 O 1.21365 * 120.00401 * 186.95946 * 13 12 11 15 15 C 1.49340 * 120.00203 * 6.95289 * 13 12 11 16 16 O 1.21397 * 119.99781 * 6.85475 * 15 13 12 17 17 N 1.34773 * 120.00346 * 186.84823 * 15 13 12 18 18 C 1.39923 * 120.00357 * 181.85994 * 17 15 13 19 19 C 1.39056 * 120.09327 * 216.70502 * 18 17 15 20 20 F 1.35095 * 120.04800 * 359.97438 * 19 18 17 21 21 C 1.38331 * 119.90205 * 179.76861 * 19 18 17 22 22 C 1.38278 * 120.09616 * 0.52840 * 21 19 18 23 23 C 1.38280 * 120.18302 * 359.69827 * 22 21 19 24 24 C 1.38324 * 120.09375 * 0.04933 * 23 22 21 25 25 F 1.35099 * 120.04547 * 179.97438 * 24 23 22 26 26 C 1.46960 * 118.81117 * 304.64523 * 12 11 10 27 27 C 1.46964 * 120.59318 * 327.57832 * 9 7 2 28 28 H 0.96994 * 120.00551 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.61137 * 244.54826 * 10 9 7 30 30 H 1.09008 * 109.60804 * 5.05226 * 10 9 7 31 31 H 1.08995 * 109.74288 * 289.85152 * 11 10 9 32 32 H 1.09004 * 109.67451 * 169.38907 * 11 10 9 33 33 H 0.97004 * 119.99829 * 1.85969 * 17 15 13 34 34 H 1.08000 * 119.94918 * 180.25171 * 21 19 18 35 35 H 1.07997 * 119.90682 * 179.72357 * 22 21 19 36 36 H 1.08003 * 119.94841 * 180.02562 * 23 22 21 37 37 H 1.09008 * 109.61043 * 295.48463 * 26 12 11 38 38 H 1.08995 * 109.75174 * 175.05531 * 26 12 11 39 39 H 1.09000 * 109.61065 * 354.94143 * 27 9 7 40 40 H 1.08995 * 109.61469 * 115.28262 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0745 -1.2110 -0.1844 9 7 1.3448 -2.3771 0.2265 10 6 1.7810 -3.6213 -0.4228 11 6 2.0329 -4.6758 0.6683 12 7 0.8658 -4.7141 1.5608 13 6 0.2103 -5.8703 1.7835 14 8 -0.8237 -5.8691 2.4189 15 6 0.7562 -7.1533 1.2483 16 8 1.8497 -7.1748 0.7216 17 7 0.0349 -8.2872 1.3502 18 6 0.5625 -9.4963 0.8839 19 6 -0.2678 -10.4302 0.2739 20 9 -1.5861 -10.1719 0.1308 21 6 0.2588 -11.6223 -0.1899 22 6 1.6068 -11.8905 -0.0379 23 6 2.4350 -10.9666 0.5723 24 6 1.9175 -9.7698 1.0344 25 9 2.7275 -8.8680 1.6309 26 6 0.4262 -3.4688 2.2056 27 6 0.1778 -2.4154 1.1189 28 1 -0.4851 0.8399 0.0004 29 1 1.0035 -3.9718 -1.1016 30 1 2.7012 -3.4408 -0.9786 31 1 2.9219 -4.4091 1.2398 32 1 2.1736 -5.6537 0.2079 33 1 -0.8501 -8.2650 1.7469 34 1 -0.3846 -12.3464 -0.6674 35 1 2.0139 -12.8241 -0.3972 36 1 3.4874 -11.1798 0.6887 37 1 1.2009 -3.1162 2.8866 38 1 -0.4951 -3.6466 2.7602 39 1 0.0388 -1.4383 1.5816 40 1 -0.7117 -2.6790 0.5469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:59 Heat of formation + Delta-G solvation = -68.306384 kcal Electronic energy + Delta-G solvation = -29684.390823 eV Core-core repulsion = 25137.598440 eV Total energy + Delta-G solvation = -4546.792383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.36811 -49.07401 -41.03318 -39.38889 -38.30639 -37.04193 -35.39282 -33.80726 -31.21035 -30.72573 -30.40425 -30.12425 -27.29998 -25.31617 -23.66554 -23.46664 -22.99194 -22.19994 -20.69222 -19.62542 -18.63009 -18.05965 -17.73315 -17.22724 -16.85738 -16.19921 -15.95397 -15.92966 -15.85672 -15.47961 -15.32687 -14.96068 -14.81954 -14.63177 -14.02090 -13.95720 -13.62994 -13.42423 -13.23916 -13.13092 -12.54700 -12.40847 -12.36798 -12.14111 -11.96090 -11.32488 -11.11635 -10.94365 -10.77654 -10.64860 -10.53895 -10.25793 -10.05050 -9.90447 -9.14501 -9.01504 -8.72758 -8.60470 -8.39756 -6.66088 -5.85179 -3.36246 0.43051 0.57902 1.47692 2.17256 2.93273 3.26116 3.33522 3.35421 3.41183 3.43271 3.55553 4.04199 4.23551 4.29121 4.37501 4.44950 4.69346 4.98460 5.31202 5.32959 5.37613 5.47472 5.57611 5.72341 5.75091 5.82202 5.88306 5.99549 6.20131 6.22014 6.29271 6.38963 6.55971 6.66281 6.72334 6.85705 7.16940 7.48606 7.56728 7.67887 7.73398 8.11605 8.38879 9.12575 9.73032 10.32112 11.22014 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.002695 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.797732 B =10388.750744 C =10820.840593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.131 3.869 11 C 0.046 3.954 12 N -0.552 5.552 13 C 0.503 3.497 14 O -0.537 6.537 15 C 0.507 3.493 16 O -0.474 6.474 17 N -0.645 5.645 18 C 0.077 3.923 19 C 0.108 3.892 20 F -0.126 7.126 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.147 4.147 24 C 0.131 3.869 25 F -0.107 7.107 26 C 0.082 3.918 27 C 0.160 3.840 28 H 0.255 0.745 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.428 0.572 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -24.951 1.800 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.077 4.077 12 N -0.283 5.283 13 C 0.284 3.716 14 O -0.416 6.416 15 C 0.291 3.709 16 O -0.347 6.347 17 N -0.293 5.293 18 C -0.020 4.020 19 C 0.086 3.914 20 F -0.104 7.104 21 C -0.167 4.167 22 C -0.094 4.094 23 C -0.166 4.166 24 C 0.109 3.891 25 F -0.085 7.085 26 C -0.041 4.041 27 C 0.034 3.966 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.267 0.733 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.054 -24.610 1.790 24.760 hybrid contribution -0.164 1.230 0.211 1.259 sum 1.890 -23.380 2.001 23.541 Atomic orbital electron populations 1.69962 1.05341 1.25666 1.53761 1.25237 0.95426 0.98622 1.00070 0.86160 0.79317 0.83582 0.77323 1.20145 1.21587 1.21470 1.19239 0.91051 0.83721 1.44617 0.91518 1.44026 1.33623 1.04107 1.49788 1.21423 0.98550 0.87136 0.92461 1.23653 0.86330 1.04708 0.93024 1.48011 1.29665 1.06941 1.43692 1.19429 0.85119 0.84411 0.82633 1.90735 1.22509 1.86259 1.42065 1.20790 0.85177 0.85271 0.79695 1.90563 1.19638 1.84067 1.40429 1.43094 1.21937 1.04467 1.59829 1.17691 0.92582 0.88322 1.03413 1.17199 0.78259 0.95269 1.00676 1.91547 1.30975 1.94292 1.93591 1.21088 0.96785 0.95990 1.02795 1.20873 0.92040 0.99410 0.97046 1.21177 1.01965 0.92429 1.01076 1.17275 0.86372 0.88057 0.97436 1.91638 1.71599 1.65285 1.80020 1.22778 1.00217 0.83517 0.97623 1.21182 0.89025 0.96980 0.89418 0.93440 0.96022 0.91272 0.91418 0.85266 0.73323 0.83466 0.83626 0.83466 0.91302 0.89791 0.87981 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.12 55.49 0.62 -25.24 16 2 C 0.01 0.15 5.03 -17.43 -0.09 0.06 16 3 Si 0.91 21.36 29.57 -169.99 -5.03 16.33 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -6.92 9.56 -15.06 -0.14 -7.07 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 N -0.59 -14.79 2.95 -171.77 -0.51 -15.30 16 10 C 0.13 2.79 6.70 -3.37 -0.02 2.77 16 11 C 0.05 0.85 6.24 -3.37 -0.02 0.83 16 12 N -0.55 -10.54 2.95 -172.77 -0.51 -11.05 16 13 C 0.50 9.04 7.74 -11.64 -0.09 8.95 16 14 O -0.54 -10.29 15.92 5.48 0.09 -10.20 16 15 C 0.51 7.99 7.20 -11.64 -0.08 7.90 16 16 O -0.47 -7.89 9.75 5.46 0.05 -7.83 16 17 N -0.65 -8.44 5.19 -10.19 -0.05 -8.49 16 18 C 0.08 0.89 6.24 -83.56 -0.52 0.37 16 19 C 0.11 1.04 7.31 -39.24 -0.29 0.75 16 20 F -0.13 -1.31 16.99 2.25 0.04 -1.27 16 21 C -0.15 -0.98 10.02 -39.53 -0.40 -1.38 16 22 C -0.07 -0.42 10.04 -39.55 -0.40 -0.82 16 23 C -0.15 -1.13 10.02 -39.53 -0.40 -1.52 16 24 C 0.13 1.48 6.66 -39.25 -0.26 1.21 16 25 F -0.11 -1.49 13.66 2.25 0.03 -1.46 16 26 C 0.08 1.64 6.59 -3.60 -0.02 1.61 16 27 C 0.16 3.84 5.45 -3.60 -0.02 3.82 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.40 7.93 -51.92 -0.41 0.99 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.13 2.29 4.12 -55.67 -0.23 2.06 16 33 H 0.43 5.07 8.20 -40.82 -0.33 4.74 16 34 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 36 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 39 H 0.10 2.66 6.11 -51.93 -0.32 2.35 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -31.69 340.50 -7.05 -38.74 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.16 Total: 3.17 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: -2.75 Total: 17.48 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.45 Total: -60.08 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.14 Total: -18.04 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.07 Total: -2.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.69 -7.05 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.564 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds