Wall clock time and date at job start Tue Mar 31 2020 22:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48505 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46888 * 300.00093 * 3 2 1 6 6 H 1.48501 * 109.46997 * 60.00038 * 3 2 1 7 7 C 1.38810 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00232 * 168.66335 * 7 2 1 9 9 N 1.36939 * 119.99928 * 348.93705 * 7 2 1 10 10 C 1.46961 * 120.59606 * 147.29005 * 9 7 2 11 11 C 1.53807 * 108.39802 * 124.75787 * 10 9 7 12 12 N 1.46969 * 108.57737 * 49.64239 * 11 10 9 13 13 C 1.34772 * 120.59491 * 124.62606 * 12 11 10 14 14 O 1.21365 * 120.00401 * 186.95946 * 13 12 11 15 15 C 1.49340 * 120.00203 * 6.95289 * 13 12 11 16 16 O 1.21397 * 119.99781 * 6.85475 * 15 13 12 17 17 N 1.34773 * 120.00346 * 186.84823 * 15 13 12 18 18 C 1.39923 * 120.00357 * 181.85994 * 17 15 13 19 19 C 1.39056 * 120.09327 * 216.70502 * 18 17 15 20 20 F 1.35095 * 120.04800 * 359.97438 * 19 18 17 21 21 C 1.38331 * 119.90205 * 179.76861 * 19 18 17 22 22 C 1.38278 * 120.09616 * 0.52840 * 21 19 18 23 23 C 1.38280 * 120.18302 * 359.69827 * 22 21 19 24 24 C 1.38324 * 120.09375 * 0.04933 * 23 22 21 25 25 F 1.35099 * 120.04547 * 179.97438 * 24 23 22 26 26 C 1.46960 * 118.81117 * 304.64523 * 12 11 10 27 27 C 1.46964 * 120.59318 * 327.57832 * 9 7 2 28 28 H 0.96994 * 120.00551 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.61137 * 244.54826 * 10 9 7 30 30 H 1.09008 * 109.60804 * 5.05226 * 10 9 7 31 31 H 1.08995 * 109.74288 * 289.85152 * 11 10 9 32 32 H 1.09004 * 109.67451 * 169.38907 * 11 10 9 33 33 H 0.97004 * 119.99829 * 1.85969 * 17 15 13 34 34 H 1.08000 * 119.94918 * 180.25171 * 21 19 18 35 35 H 1.07997 * 119.90682 * 179.72357 * 22 21 19 36 36 H 1.08003 * 119.94841 * 180.02562 * 23 22 21 37 37 H 1.09008 * 109.61043 * 295.48463 * 26 12 11 38 38 H 1.08995 * 109.75174 * 175.05531 * 26 12 11 39 39 H 1.09000 * 109.61065 * 354.94143 * 27 9 7 40 40 H 1.08995 * 109.61469 * 115.28262 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0745 -1.2110 -0.1844 9 7 1.3448 -2.3771 0.2265 10 6 1.7810 -3.6213 -0.4228 11 6 2.0329 -4.6758 0.6683 12 7 0.8658 -4.7141 1.5608 13 6 0.2103 -5.8703 1.7835 14 8 -0.8237 -5.8691 2.4189 15 6 0.7562 -7.1533 1.2483 16 8 1.8497 -7.1748 0.7216 17 7 0.0349 -8.2872 1.3502 18 6 0.5625 -9.4963 0.8839 19 6 -0.2678 -10.4302 0.2739 20 9 -1.5861 -10.1719 0.1308 21 6 0.2588 -11.6223 -0.1899 22 6 1.6068 -11.8905 -0.0379 23 6 2.4350 -10.9666 0.5723 24 6 1.9175 -9.7698 1.0344 25 9 2.7275 -8.8680 1.6309 26 6 0.4262 -3.4688 2.2056 27 6 0.1778 -2.4154 1.1189 28 1 -0.4851 0.8399 0.0004 29 1 1.0035 -3.9718 -1.1016 30 1 2.7012 -3.4408 -0.9786 31 1 2.9219 -4.4091 1.2398 32 1 2.1736 -5.6537 0.2079 33 1 -0.8501 -8.2650 1.7469 34 1 -0.3846 -12.3464 -0.6674 35 1 2.0139 -12.8241 -0.3972 36 1 3.4874 -11.1798 0.6887 37 1 1.2009 -3.1162 2.8866 38 1 -0.4951 -3.6466 2.7602 39 1 0.0388 -1.4383 1.5816 40 1 -0.7117 -2.6790 0.5469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597274125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:58 Heat of formation + Delta-G solvation = -88.911575 kcal Electronic energy + Delta-G solvation = -29685.284331 eV Core-core repulsion = 25137.598440 eV Total energy + Delta-G solvation = -4547.685891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.11367 -49.95133 -42.30397 -40.47333 -39.36066 -38.68919 -36.54697 -35.49359 -33.14145 -32.09935 -31.35693 -30.98272 -29.03409 -26.75758 -25.22686 -24.67660 -24.09961 -23.38589 -22.06006 -21.12869 -19.66533 -19.18567 -18.77041 -18.50287 -18.08747 -17.57524 -17.21845 -17.03365 -16.75543 -16.67364 -16.46919 -16.22412 -15.91487 -15.65374 -15.53971 -15.44250 -15.24107 -15.09583 -14.92814 -14.10027 -13.89748 -13.58602 -13.22516 -13.19205 -12.95605 -12.88781 -12.77231 -12.57431 -12.46595 -12.24293 -12.09592 -11.96529 -11.76490 -11.73070 -10.67201 -10.43523 -10.06481 -9.80157 -9.51287 -8.66133 -7.91039 -5.46699 -0.36603 -0.06682 0.27785 0.97452 1.46688 1.48333 1.59157 1.86685 2.17650 2.35900 2.48972 2.70400 2.99317 3.24975 3.39406 3.57600 3.62313 3.78216 4.12425 4.15886 4.19222 4.22519 4.33848 4.53701 4.55717 4.68078 4.68714 4.74400 4.93371 4.95424 5.05175 5.15105 5.16021 5.19745 5.30974 5.50701 5.59381 5.64830 5.74199 6.10837 6.34305 6.41481 6.66723 7.07303 7.72902 8.29019 9.14054 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.002695 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.797732 B =10388.750744 C =10820.840593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.047 4.047 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.130 3.870 11 C 0.062 3.938 12 N -0.562 5.562 13 C 0.504 3.496 14 O -0.550 6.550 15 C 0.511 3.489 16 O -0.485 6.485 17 N -0.635 5.635 18 C 0.045 3.955 19 C 0.096 3.904 20 F -0.135 7.135 21 C -0.135 4.135 22 C -0.053 4.053 23 C -0.141 4.141 24 C 0.101 3.899 25 F -0.130 7.130 26 C 0.096 3.904 27 C 0.171 3.829 28 H 0.252 0.748 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.430 0.570 34 H 0.179 0.821 35 H 0.191 0.809 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.077 0.923 40 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -27.959 1.302 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.060 4.060 12 N -0.294 5.294 13 C 0.286 3.714 14 O -0.429 6.429 15 C 0.294 3.706 16 O -0.360 6.360 17 N -0.283 5.283 18 C -0.051 4.051 19 C 0.074 3.926 20 F -0.113 7.113 21 C -0.153 4.153 22 C -0.071 4.071 23 C -0.160 4.160 24 C 0.079 3.921 25 F -0.108 7.108 26 C -0.027 4.027 27 C 0.044 3.956 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.270 0.730 34 H 0.196 0.804 35 H 0.209 0.791 36 H 0.187 0.813 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 3.457 -27.686 1.292 27.931 hybrid contribution -0.638 1.940 0.312 2.066 sum 2.819 -25.746 1.605 25.950 Atomic orbital electron populations 1.70126 1.06824 1.26114 1.55128 1.26009 0.96166 1.01823 1.00229 0.85115 0.78627 0.79340 0.76768 1.18841 1.21948 1.21517 1.19570 0.91479 0.84668 1.43901 0.91075 1.44272 1.33592 1.04849 1.50618 1.21543 0.98421 0.86430 0.93243 1.23532 0.86158 1.04252 0.92107 1.48018 1.30096 1.07027 1.44214 1.19832 0.84552 0.85013 0.81980 1.90718 1.23050 1.86694 1.42485 1.20194 0.85251 0.85084 0.80081 1.90527 1.19987 1.84067 1.41385 1.42909 1.21642 1.04540 1.59173 1.17974 0.93376 0.88064 1.05639 1.17494 0.77781 0.96029 1.01261 1.91525 1.31606 1.94488 1.93725 1.21550 0.97744 0.94939 1.01114 1.21425 0.91138 1.00074 0.94454 1.21556 1.03446 0.91117 0.99905 1.17740 0.86182 0.89197 0.98942 1.91572 1.72121 1.66416 1.80735 1.22439 1.00881 0.83150 0.96231 1.20903 0.87953 0.96890 0.89818 0.93845 0.97074 0.90332 0.90954 0.83891 0.72994 0.80368 0.79149 0.81283 0.90438 0.89204 0.90529 0.98539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 11.12 21.65 0.24 -54.95 16 2 C -0.05 -2.58 5.03 84.86 0.43 -2.15 16 3 Si 0.97 44.38 29.57 68.60 2.03 46.41 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.27 -14.50 9.56 84.03 0.80 -13.70 16 8 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 9 N -0.61 -31.06 2.95 -697.36 -2.06 -33.12 16 10 C 0.13 5.57 6.70 86.56 0.58 6.15 16 11 C 0.06 2.28 6.24 86.56 0.54 2.82 16 12 N -0.56 -21.63 2.95 -818.87 -2.41 -24.04 16 13 C 0.50 18.25 7.74 87.24 0.68 18.93 16 14 O -0.55 -21.29 15.92 -3.29 -0.05 -21.34 16 15 C 0.51 16.14 7.20 87.24 0.63 16.77 16 16 O -0.49 -16.05 9.75 -3.39 -0.03 -16.08 16 17 N -0.63 -16.64 5.19 -304.49 -1.58 -18.22 16 18 C 0.05 1.01 6.24 38.24 0.24 1.25 16 19 C 0.10 1.67 7.31 22.49 0.16 1.83 16 20 F -0.13 -2.66 16.99 44.97 0.76 -1.90 16 21 C -0.13 -1.26 10.02 22.30 0.22 -1.04 16 22 C -0.05 -0.34 10.04 22.29 0.22 -0.12 16 23 C -0.14 -1.71 10.02 22.30 0.22 -1.49 16 24 C 0.10 2.16 6.66 22.49 0.15 2.31 16 25 F -0.13 -3.59 13.66 44.97 0.61 -2.97 16 26 C 0.10 3.93 6.59 86.42 0.57 4.50 16 27 C 0.17 8.49 5.45 86.42 0.47 8.96 16 28 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 3.17 7.93 -2.38 -0.02 3.15 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.14 5.00 4.12 -61.68 -0.25 4.74 16 33 H 0.43 10.35 8.20 -92.71 -0.76 9.59 16 34 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.19 -0.39 8.06 -2.91 -0.02 -0.41 16 36 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.09 3.54 7.00 -2.39 -0.02 3.53 16 39 H 0.08 4.18 6.11 -2.39 -0.01 4.17 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -70.73 340.50 3.55 -67.19 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.11 Total: 14.01 kcal Atomic # 6 Polarization: 39.10 SS G_CDS: 5.92 Total: 45.02 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -5.81 Total: -130.33 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.09 Total: -37.42 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.38 Total: -4.87 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.73 3.55 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.722 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds