Wall clock time and date at job start Tue Mar 31 2020 22:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99982 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09004 * 115.55248 * 9.05141 * 17 16 14 19 19 C 1.52999 * 117.49642 * 223.34502 * 17 16 14 20 20 C 1.52999 * 117.49667 * 154.72381 * 17 16 14 21 21 H 1.08994 * 117.50187 * 359.97438 * 20 17 16 22 22 C 1.50710 * 117.49597 * 214.99840 * 20 17 16 23 23 C 1.38225 * 119.98937 * 299.72411 * 22 20 17 24 24 C 1.38184 * 120.05235 * 179.76467 * 23 22 20 25 25 C 1.38491 * 120.02433 * 0.51447 * 24 23 22 26 26 F 1.35099 * 120.01683 * 179.76618 * 25 24 23 27 27 C 1.38401 * 119.97408 * 359.73821 * 25 24 23 28 28 C 1.38445 * 119.94986 * 0.02562 * 27 25 24 29 29 F 1.35099 * 120.01446 * 180.02562 * 28 27 25 30 30 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 33 33 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 34 34 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 35 35 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 36 36 H 1.09001 * 117.49941 * 359.97438 * 19 17 16 37 37 H 1.09001 * 117.49839 * 145.01989 * 19 17 16 38 38 H 1.08005 * 119.97509 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.99115 * 180.25366 * 24 23 22 40 40 H 1.08001 * 120.02748 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 1 1.0622 -9.7718 -0.1624 19 6 2.8264 -10.6502 0.9268 20 6 3.0574 -10.7262 -0.5838 21 1 4.0280 -10.4048 -0.9616 22 6 2.4152 -11.8674 -1.3298 23 6 1.5145 -12.6943 -0.6853 24 6 0.9212 -13.7381 -1.3694 25 6 1.2366 -13.9633 -2.6990 26 9 0.6601 -14.9867 -3.3664 27 6 2.1423 -13.1392 -3.3440 28 6 2.7324 -12.0908 -2.6589 29 9 3.6163 -11.2852 -3.2873 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6167 -4.9208 -0.8885 33 1 0.6176 -4.9205 0.8915 34 1 3.1495 -5.7992 0.0000 35 1 3.5761 -8.0942 0.0000 36 1 3.6454 -10.2789 1.5428 37 1 2.2099 -11.4258 1.3813 38 1 1.2710 -12.5219 0.3528 39 1 0.2144 -14.3811 -0.8660 40 1 2.3886 -13.3138 -4.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599225849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:05 Heat of formation + Delta-G solvation = -103.730579 kcal Electronic energy + Delta-G solvation = -27189.368995 eV Core-core repulsion = 22641.040504 eV Total energy + Delta-G solvation = -4548.328491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.41524 -49.35275 -40.32138 -39.53046 -38.28543 -37.25346 -34.44393 -33.72040 -33.15963 -31.38861 -31.27157 -30.34844 -27.51264 -24.64997 -24.54406 -23.38923 -22.35525 -21.10666 -20.81765 -19.63043 -18.79701 -18.46798 -17.98259 -17.68067 -16.71415 -16.40853 -16.32423 -15.95133 -15.67977 -15.58146 -15.46834 -14.89730 -14.88710 -14.61844 -14.55646 -14.10350 -14.05508 -13.63897 -13.47350 -12.95539 -12.80151 -12.59704 -12.20789 -12.16287 -12.02321 -11.85126 -11.64434 -11.52337 -11.15008 -10.94255 -10.41887 -10.34203 -10.14240 -9.65920 -9.55380 -9.29991 -8.88940 -8.64523 -8.52690 -8.11202 -6.52569 -3.94638 0.43908 0.53508 2.57507 2.80457 3.09349 3.19447 3.21875 3.28508 3.41142 3.66416 3.73925 3.95691 4.01059 4.08866 4.11483 4.31177 4.39368 4.41442 4.54601 4.66566 4.79875 4.87511 5.16177 5.24304 5.34082 5.36662 5.47446 5.51034 5.58470 5.61865 5.82420 5.90015 5.97803 6.05943 6.28399 6.38815 6.68437 6.98749 7.45256 7.91358 8.13660 8.43712 8.69519 9.03613 9.38230 9.85894 10.64354 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.001666 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.779101 B =16804.860023 C =16850.381751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.720 5.720 17 C 0.130 3.870 18 H 0.143 0.857 19 C -0.182 4.182 20 C -0.135 4.135 21 H 0.122 0.878 22 C -0.089 4.089 23 C -0.063 4.063 24 C -0.158 4.158 25 C 0.124 3.876 26 F -0.132 7.132 27 C -0.189 4.189 28 C 0.138 3.862 29 F -0.126 7.126 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.400 0.600 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -27.622 -1.292 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.409 3.591 15 O -0.473 6.473 16 N -0.373 5.373 17 C 0.022 3.978 18 H 0.161 0.839 19 C -0.221 4.221 20 C -0.155 4.155 21 H 0.140 0.860 22 C -0.090 4.090 23 C -0.081 4.081 24 C -0.177 4.177 25 C 0.104 3.896 26 F -0.111 7.111 27 C -0.209 4.209 28 C 0.118 3.882 29 F -0.105 7.105 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.742 -27.558 -1.346 27.727 hybrid contribution 0.804 0.930 -0.388 1.289 sum 3.546 -26.629 -1.734 26.920 Atomic orbital electron populations 1.69626 1.06004 1.28434 1.49359 1.25333 0.95678 0.99953 0.96805 0.85752 0.79662 0.80806 0.77827 1.19149 1.20617 1.20608 1.19777 0.93489 0.81980 1.48162 0.87619 1.41793 1.09510 1.04454 1.62603 1.19750 0.88290 0.85003 0.85566 1.90493 1.13745 1.86854 1.57396 1.20810 0.91169 0.84776 1.03256 1.44759 1.11378 1.03220 1.78518 1.15764 0.85095 0.80494 0.77757 1.90909 1.13940 1.84155 1.58250 1.44418 1.09070 1.03743 1.80095 1.21519 0.97816 0.77468 1.00994 0.83943 1.23712 1.04331 1.02668 0.91350 1.21483 1.01296 0.97021 0.95713 0.86018 1.19171 0.99668 0.97919 0.92248 1.20841 0.94031 0.92677 1.00584 1.21202 1.02966 1.00547 0.92953 1.17308 0.94786 0.86852 0.90644 1.91539 1.82672 1.56397 1.80464 1.21036 1.00624 0.96890 1.02342 1.17065 0.90828 0.90135 0.90144 1.91545 1.65523 1.71341 1.82052 0.91628 0.76998 0.89911 0.89885 0.75500 0.76585 0.87513 0.87349 0.83510 0.83796 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 10 C 0.43 9.71 7.85 -10.98 -0.09 9.62 16 11 O -0.60 -15.11 15.24 5.55 0.08 -15.03 16 12 C 0.13 2.34 6.15 -5.19 -0.03 2.31 16 13 N -0.72 -11.79 5.53 -66.41 -0.37 -12.16 16 14 C 0.71 11.10 8.57 -86.92 -0.74 10.35 16 15 O -0.59 -11.21 15.91 5.28 0.08 -11.13 16 16 N -0.72 -8.15 5.57 -58.67 -0.33 -8.48 16 17 C 0.13 1.25 6.07 -67.93 -0.41 0.84 16 18 H 0.14 1.59 7.40 -51.93 -0.38 1.21 16 19 C -0.18 -1.19 9.79 -26.73 -0.26 -1.45 16 20 C -0.14 -1.04 5.72 -91.77 -0.52 -1.57 16 21 H 0.12 0.93 7.86 -51.93 -0.41 0.52 16 22 C -0.09 -0.70 5.62 -104.54 -0.59 -1.29 16 23 C -0.06 -0.40 9.30 -39.61 -0.37 -0.77 16 24 C -0.16 -1.00 10.02 -39.51 -0.40 -1.40 16 25 C 0.12 0.96 7.30 -39.43 -0.29 0.67 16 26 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 27 C -0.19 -1.51 10.01 -39.45 -0.39 -1.90 16 28 C 0.14 1.22 7.24 -39.43 -0.29 0.94 16 29 F -0.13 -1.28 16.61 2.25 0.04 -1.24 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.41 6.43 7.45 -40.82 -0.30 6.13 16 35 H 0.40 3.57 8.84 -40.82 -0.36 3.21 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.52 6.17 -51.93 -0.32 0.20 16 38 H 0.15 0.61 6.02 -52.48 -0.32 0.29 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -32.27 361.80 -8.02 -40.29 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -4.04 Total: 16.01 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -4.62 Total: 8.55 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.03 Total: -57.23 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.17 Total: -26.15 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.27 -8.02 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599225849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.440 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds