Wall clock time and date at job start Tue Mar 31 2020 22:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99982 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09004 * 115.55248 * 9.05141 * 17 16 14 19 19 C 1.52999 * 117.49642 * 223.34502 * 17 16 14 20 20 C 1.52999 * 117.49667 * 154.72381 * 17 16 14 21 21 H 1.08994 * 117.50187 * 359.97438 * 20 17 16 22 22 C 1.50710 * 117.49597 * 214.99840 * 20 17 16 23 23 C 1.38225 * 119.98937 * 299.72411 * 22 20 17 24 24 C 1.38184 * 120.05235 * 179.76467 * 23 22 20 25 25 C 1.38491 * 120.02433 * 0.51447 * 24 23 22 26 26 F 1.35099 * 120.01683 * 179.76618 * 25 24 23 27 27 C 1.38401 * 119.97408 * 359.73821 * 25 24 23 28 28 C 1.38445 * 119.94986 * 0.02562 * 27 25 24 29 29 F 1.35099 * 120.01446 * 180.02562 * 28 27 25 30 30 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 33 33 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 34 34 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 35 35 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 36 36 H 1.09001 * 117.49941 * 359.97438 * 19 17 16 37 37 H 1.09001 * 117.49839 * 145.01989 * 19 17 16 38 38 H 1.08005 * 119.97509 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.99115 * 180.25366 * 24 23 22 40 40 H 1.08001 * 120.02748 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 1 1.0622 -9.7718 -0.1624 19 6 2.8264 -10.6502 0.9268 20 6 3.0574 -10.7262 -0.5838 21 1 4.0280 -10.4048 -0.9616 22 6 2.4152 -11.8674 -1.3298 23 6 1.5145 -12.6943 -0.6853 24 6 0.9212 -13.7381 -1.3694 25 6 1.2366 -13.9633 -2.6990 26 9 0.6601 -14.9867 -3.3664 27 6 2.1423 -13.1392 -3.3440 28 6 2.7324 -12.0908 -2.6589 29 9 3.6163 -11.2852 -3.2873 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6167 -4.9208 -0.8885 33 1 0.6176 -4.9205 0.8915 34 1 3.1495 -5.7992 0.0000 35 1 3.5761 -8.0942 0.0000 36 1 3.6454 -10.2789 1.5428 37 1 2.2099 -11.4258 1.3813 38 1 1.2710 -12.5219 0.3528 39 1 0.2144 -14.3811 -0.8660 40 1 2.3886 -13.3138 -4.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599225849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:04 Heat of formation + Delta-G solvation = -125.866807 kcal Electronic energy + Delta-G solvation = -27190.328894 eV Core-core repulsion = 22641.040504 eV Total energy + Delta-G solvation = -4549.288390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05795 -50.02377 -41.35311 -40.45908 -39.91285 -38.05739 -36.22885 -35.27923 -34.16245 -33.34696 -31.83450 -31.01102 -29.06920 -26.42161 -25.16991 -24.02484 -23.19770 -21.92991 -21.71449 -21.35598 -20.15139 -19.69280 -19.26005 -18.34026 -17.63596 -17.43639 -17.03626 -16.97639 -16.84242 -16.72808 -16.39072 -16.34833 -16.00460 -15.66607 -15.57313 -15.44111 -15.32773 -15.04526 -14.27195 -13.94736 -13.74393 -13.58125 -13.54715 -13.37519 -13.21226 -12.91891 -12.59897 -12.50009 -12.44022 -12.28579 -12.10956 -11.57486 -11.56584 -11.46047 -10.55296 -10.37075 -10.11767 -10.08528 -9.88461 -9.32235 -8.50694 -6.00807 -0.15131 -0.02079 1.35575 1.42542 1.50030 1.58848 1.89426 2.00143 2.27172 2.29567 2.81463 2.96906 3.03996 3.16672 3.25377 3.37566 3.48613 3.58557 3.72731 3.89071 3.97017 4.08999 4.19847 4.23219 4.43510 4.47145 4.67736 4.77935 4.83102 4.85242 4.95307 5.01677 5.10710 5.27644 5.29647 5.39432 5.50817 5.72861 5.90643 5.94310 6.48566 6.98876 7.04161 7.42730 7.50685 7.95078 8.66428 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.001666 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.779101 B =16804.860023 C =16850.381751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.628 6.628 16 N -0.705 5.705 17 C 0.099 3.901 18 H 0.126 0.874 19 C -0.153 4.153 20 C -0.128 4.128 21 H 0.122 0.878 22 C -0.097 4.097 23 C -0.059 4.059 24 C -0.150 4.150 25 C 0.111 3.889 26 F -0.138 7.138 27 C -0.195 4.195 28 C 0.116 3.884 29 F -0.140 7.140 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.411 0.589 35 H 0.412 0.588 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -28.683 -0.242 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.380 5.380 14 C 0.409 3.591 15 O -0.509 6.509 16 N -0.358 5.358 17 C -0.008 4.008 18 H 0.144 0.856 19 C -0.191 4.191 20 C -0.147 4.147 21 H 0.140 0.860 22 C -0.098 4.098 23 C -0.076 4.076 24 C -0.169 4.169 25 C 0.092 3.908 26 F -0.117 7.117 27 C -0.215 4.215 28 C 0.096 3.904 29 F -0.118 7.118 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.248 0.752 35 H 0.249 0.751 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.191 0.809 39 H 0.186 0.814 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.916 -28.670 -0.298 28.820 hybrid contribution 0.758 1.126 -0.728 1.541 sum 3.674 -27.544 -1.026 27.807 Atomic orbital electron populations 1.69689 1.06988 1.29555 1.49377 1.26132 0.96548 1.02691 0.95840 0.84805 0.78118 0.76735 0.78275 1.19438 1.19729 1.19616 1.19772 0.92969 0.83537 1.50270 0.89551 1.41839 1.09616 1.04590 1.63458 1.20424 0.88114 0.85915 0.83464 1.90469 1.15181 1.87563 1.58011 1.20595 0.90957 0.82970 1.04147 1.44672 1.11096 1.03206 1.79053 1.15849 0.85083 0.80695 0.77509 1.90883 1.15551 1.84589 1.59912 1.44297 1.09173 1.03644 1.78729 1.21640 0.97552 0.76908 1.04692 0.85611 1.23847 1.03752 1.00899 0.90604 1.21448 1.00499 0.95868 0.96912 0.86045 1.19333 1.00168 0.98326 0.91965 1.21145 0.92949 0.91879 1.01673 1.21514 1.02624 1.00465 0.92269 1.17498 0.95083 0.86881 0.91372 1.91523 1.82786 1.56658 1.80730 1.21143 1.00709 0.96829 1.02806 1.17300 0.91526 0.90712 0.90847 1.91505 1.66100 1.71801 1.82399 0.91086 0.76673 0.89098 0.88800 0.75154 0.75129 0.86308 0.85013 0.80902 0.81374 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 13.05 21.66 0.28 -48.20 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 3 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -18.43 9.68 84.04 0.81 -17.61 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.91 5.29 -306.99 -1.62 -29.53 16 10 C 0.43 19.81 7.85 87.66 0.69 20.49 16 11 O -0.62 -31.84 15.24 -3.07 -0.05 -31.89 16 12 C 0.14 5.14 6.15 85.63 0.53 5.66 16 13 N -0.72 -23.22 5.53 -482.28 -2.67 -25.88 16 14 C 0.71 21.70 8.57 179.05 1.53 23.23 16 15 O -0.63 -23.47 15.91 -4.01 -0.06 -23.53 16 16 N -0.70 -15.15 5.57 -457.81 -2.55 -17.70 16 17 C 0.10 1.75 6.07 44.99 0.27 2.02 16 18 H 0.13 2.70 7.40 -2.38 -0.02 2.69 16 19 C -0.15 -1.52 9.79 30.59 0.30 -1.22 16 20 C -0.13 -1.74 5.72 -11.54 -0.07 -1.81 16 21 H 0.12 1.68 7.86 -2.39 -0.02 1.66 16 22 C -0.10 -1.39 5.62 -19.81 -0.11 -1.50 16 23 C -0.06 -0.59 9.30 22.25 0.21 -0.38 16 24 C -0.15 -1.56 10.02 22.32 0.22 -1.33 16 25 C 0.11 1.60 7.30 22.37 0.16 1.77 16 26 F -0.14 -2.22 17.27 44.97 0.78 -1.45 16 27 C -0.20 -3.06 10.01 22.36 0.22 -2.83 16 28 C 0.12 2.01 7.24 22.37 0.16 2.18 16 29 F -0.14 -2.86 16.61 44.97 0.75 -2.12 16 30 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 32 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 34 H 0.41 12.76 7.45 -92.71 -0.69 12.07 16 35 H 0.41 6.78 8.84 -92.71 -0.82 5.96 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 0.71 6.17 -2.39 -0.01 0.69 16 38 H 0.17 0.75 6.02 -2.91 -0.02 0.74 16 39 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.83 361.80 1.20 -68.63 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -1.09 Total: 39.52 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 5.40 Total: 28.53 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -6.56 Total: -121.32 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.11 Total: -55.42 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.52 Total: -3.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.83 1.20 -68.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599225849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.232 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds