Wall clock time and date at job start Tue Mar 31 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39763 * 125.83896 * 2 1 4 4 C 1.36172 * 107.81294 * 180.02562 * 3 2 1 5 5 N 1.39214 * 126.22126 * 180.02562 * 4 3 2 6 6 S 1.65604 * 119.99753 * 0.02562 * 5 4 3 7 7 O 1.42108 * 106.39869 * 178.53794 * 6 5 4 8 8 O 1.42096 * 106.40575 * 311.46124 * 6 5 4 9 9 C 1.76199 * 107.22052 * 65.00248 * 6 5 4 10 10 C 1.34673 * 126.58966 * 269.68852 * 9 6 5 11 11 N 1.34132 * 108.01829 * 179.87335 * 10 9 6 12 12 C 1.30493 * 109.25814 * 0.39518 * 11 10 9 13 13 C 1.50694 * 125.65006 * 179.73429 * 12 11 10 14 14 N 1.35042 * 108.70112 * 359.75765 * 12 11 10 15 15 C 1.46502 * 126.40039 * 180.02562 * 14 12 11 16 16 N 1.35240 * 107.56062 * 0.02562 * 4 3 2 17 17 C 1.46498 * 126.04466 * 180.02562 * 16 4 3 18 18 C 1.50696 * 109.47390 * 269.99895 * 17 16 4 19 19 H 1.08004 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00505 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00430 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99611 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47534 * 89.99769 * 22 20 18 24 24 H 1.48506 * 109.47213 * 209.99816 * 22 20 18 25 25 H 1.48502 * 109.47176 * 329.99446 * 22 20 18 26 26 N 1.30838 * 125.83641 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47362 * 270.00252 * 1 2 3 28 28 H 1.08998 * 109.46866 * 29.99770 * 1 2 3 29 29 H 1.08996 * 109.47434 * 149.99921 * 1 2 3 30 30 H 1.08007 * 126.09806 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00434 * 179.97438 * 5 4 3 32 32 H 1.07997 * 125.99058 * 0.02562 * 10 9 6 33 33 H 1.09002 * 109.47252 * 270.02592 * 13 12 11 34 34 H 1.08998 * 109.47138 * 30.02947 * 13 12 11 35 35 H 1.09006 * 109.47131 * 150.02184 * 13 12 11 36 36 H 1.08996 * 109.47012 * 269.99739 * 15 14 12 37 37 H 1.09000 * 109.46766 * 30.00011 * 15 14 12 38 38 H 1.09002 * 109.47489 * 149.99486 * 15 14 12 39 39 H 1.08995 * 109.47248 * 30.00436 * 17 16 4 40 40 H 1.09009 * 109.47221 * 150.00031 * 17 16 4 41 41 H 0.97002 * 120.00499 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0006 5 7 4.7500 1.5250 -0.0003 6 16 4.5840 3.1727 0.0015 7 8 5.8997 3.7085 0.0362 8 8 3.6452 3.4826 -1.0192 9 6 3.8248 3.6188 1.5277 10 6 2.5038 3.7299 1.7649 11 7 2.3411 4.0855 3.0480 12 6 3.5112 4.2071 3.6126 13 6 3.7580 4.5985 5.0467 14 7 4.4644 3.9248 2.6986 15 6 5.9127 3.9420 2.9192 16 7 3.6093 -0.6407 -0.0015 17 6 4.7867 -1.5123 -0.0018 18 6 5.1908 -1.8103 -1.4227 19 1 4.6272 -1.3918 -2.2435 20 6 6.2807 -2.6162 -1.6750 21 7 6.6337 -2.8758 -2.9149 22 14 7.2561 -3.3393 -0.2554 23 1 6.6820 -4.6565 0.1195 24 1 8.6721 -3.5156 -0.6667 25 1 7.1897 -2.4207 0.9095 26 7 2.2731 -1.0607 -0.0005 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.9905 2.1599 0.0004 31 1 5.6344 1.1268 -0.0004 32 1 1.7138 3.5599 1.0484 33 1 3.8469 5.6826 5.1174 34 1 2.9252 4.2612 5.6638 35 1 4.6804 4.1346 5.3964 36 1 6.3018 4.9361 2.6993 37 1 6.1249 3.6902 3.9582 38 1 6.3887 3.2123 2.2641 39 1 5.6081 -1.0136 0.5126 40 1 4.5491 -2.4443 0.5113 41 1 7.4002 -3.4431 -3.0925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600647567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:09 Heat of formation + Delta-G solvation = 71.596114 kcal Electronic energy + Delta-G solvation = -28095.458168 eV Core-core repulsion = 24140.865550 eV Total energy + Delta-G solvation = -3954.592618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44854 -40.77721 -37.51762 -36.08557 -35.24036 -34.39407 -33.91180 -32.34829 -32.18160 -29.57451 -28.32828 -27.88394 -27.05957 -26.37490 -22.63626 -22.48491 -21.04676 -20.63613 -19.92567 -19.10475 -18.12598 -17.30796 -17.24117 -16.89013 -16.27821 -16.13864 -15.46929 -14.85028 -14.78854 -14.39217 -14.15928 -13.74041 -13.72208 -13.45921 -13.19006 -12.93762 -12.86453 -12.79343 -12.72832 -12.60004 -12.42480 -12.25309 -12.13923 -11.97465 -11.84551 -11.75077 -11.51231 -11.01357 -10.85778 -10.37432 -10.33518 -10.03938 -9.93519 -9.77775 -9.08004 -8.88399 -8.15427 -7.77853 -6.35323 -4.40214 0.04061 1.18554 2.27401 2.43588 2.63209 2.80058 3.05895 3.11020 3.14624 3.22730 3.40110 3.53136 3.98239 4.11341 4.17500 4.39245 4.53149 4.78070 4.86114 4.88510 4.97435 5.07745 5.13811 5.15789 5.20817 5.43457 5.68690 5.72544 5.89134 5.94579 5.96562 6.14620 6.19500 6.29360 6.30281 6.62276 6.70813 6.76878 7.15719 7.23191 7.57218 7.64594 8.19294 8.39688 8.71231 9.18471 10.76889 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004403 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.152404 B = 6357.262188 C = 7180.045712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.078 3.922 3 C -0.331 4.331 4 C 0.334 3.666 5 N -1.027 6.027 6 S 2.732 3.268 7 O -0.949 6.949 8 O -0.920 6.920 9 C -0.608 4.608 10 C 0.122 3.878 11 N -0.496 5.496 12 C 0.251 3.749 13 C -0.075 4.075 14 N -0.407 5.407 15 C 0.054 3.946 16 N -0.333 5.333 17 C 0.228 3.772 18 C -0.548 4.548 19 H 0.084 0.916 20 C 0.081 3.919 21 N -0.881 5.881 22 Si 0.873 3.127 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.281 5.281 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.432 0.568 32 H 0.191 0.809 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 14.655 15.355 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.364 4.364 4 C 0.108 3.892 5 N -0.778 5.778 6 S 2.816 3.184 7 O -0.938 6.938 8 O -0.909 6.909 9 C -0.804 4.804 10 C -0.035 4.035 11 N -0.215 5.215 12 C -0.013 4.013 13 C -0.133 4.133 14 N -0.087 5.087 15 C -0.087 4.087 16 N -0.117 5.117 17 C 0.109 3.891 18 C -0.586 4.586 19 H 0.102 0.898 20 C -0.124 4.124 21 N -0.517 5.517 22 Si 0.699 3.301 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.191 1.191 26 N -0.106 5.106 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.270 0.730 32 H 0.208 0.792 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.345 13.963 15.001 20.765 hybrid contribution 1.765 -0.177 0.686 1.901 sum -1.580 13.786 15.687 20.943 Atomic orbital electron populations 1.20102 0.87034 1.03067 1.02388 1.21839 0.96583 0.90101 1.00262 1.20740 0.88941 1.00418 1.26343 1.17397 0.86536 0.84145 1.01122 1.52953 1.13161 1.24948 1.86763 1.01168 0.73352 0.70931 0.72942 1.93599 1.37270 1.75814 1.87167 1.93665 1.64059 1.81830 1.51340 1.33475 1.05614 1.29339 1.11959 1.22528 0.92948 0.94561 0.93482 1.70391 1.23265 1.20679 1.07147 1.23914 0.83636 0.99266 0.94520 1.20350 1.04004 1.02727 0.86248 1.44898 1.07937 1.48459 1.07426 1.22445 0.76067 1.05731 1.04504 1.48910 1.06380 1.01992 1.54428 1.20001 0.79210 0.89902 0.99959 1.21188 1.14421 1.32760 0.90256 0.89769 1.24817 0.96563 0.95252 0.95796 1.69862 1.26812 1.36406 1.18608 0.86918 0.80131 0.80614 0.82450 1.19424 1.20396 1.19142 1.77412 0.85603 1.21631 1.25942 0.91015 0.90651 0.91058 0.83543 0.72993 0.79222 0.89321 0.88462 0.90260 0.88870 0.88613 0.88460 0.94153 0.92970 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.08 1.43 7.21 -82.44 -0.59 0.84 16 3 C -0.33 -6.00 8.83 -39.75 -0.35 -6.35 16 4 C 0.33 6.54 7.58 -153.41 -1.16 5.37 16 5 N -1.03 -17.17 5.87 31.10 0.18 -16.98 16 6 S 2.73 41.31 5.30 -107.50 -0.57 40.74 16 7 O -0.95 -14.54 15.95 -57.17 -0.91 -15.45 16 8 O -0.92 -16.01 16.04 -57.17 -0.92 -16.93 16 9 C -0.61 -8.31 6.69 -16.56 -0.11 -8.42 16 10 C 0.12 1.68 10.34 -17.81 -0.18 1.50 16 11 N -0.50 -6.78 11.25 -10.82 -0.12 -6.90 16 12 C 0.25 2.81 7.90 -155.42 -1.23 1.58 16 13 C -0.07 -0.47 10.19 36.00 0.37 -0.10 16 14 N -0.41 -4.68 3.15 -120.31 -0.38 -5.06 16 15 C 0.05 0.44 10.11 59.85 0.60 1.05 16 16 N -0.33 -7.38 3.60 -61.64 -0.22 -7.61 16 17 C 0.23 5.28 5.07 -5.20 -0.03 5.25 16 18 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 16 19 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 22 Si 0.87 19.51 27.47 -169.99 -4.67 14.84 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.49 6.54 56.52 0.37 -5.12 16 26 N -0.28 -6.13 12.56 33.65 0.42 -5.71 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.15 2.29 4.01 -52.48 -0.21 2.08 16 31 H 0.43 6.75 8.09 -34.47 -0.28 6.47 16 32 H 0.19 2.32 6.31 -52.49 -0.33 1.99 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.33 7.07 -51.93 -0.37 -0.04 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.46 7.05 -51.93 -0.37 0.10 16 38 H 0.10 0.85 6.83 -51.93 -0.35 0.50 16 39 H 0.04 0.85 6.55 -51.93 -0.34 0.51 16 40 H 0.05 1.20 7.57 -51.92 -0.39 0.81 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -36.25 354.37 -8.59 -44.84 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.77 Total: 6.76 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.75 Total: -13.00 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: 0.66 Total: -67.14 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.83 Total: -32.38 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.67 Total: 14.84 kcal Atomic # 16 Polarization: 41.31 SS G_CDS: -0.57 Total: 40.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.25 -8.59 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600647567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.436 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds