Wall clock time and date at job start Tue Mar 31 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39763 * 125.83896 * 2 1 4 4 C 1.36172 * 107.81294 * 180.02562 * 3 2 1 5 5 N 1.39214 * 126.22126 * 180.02562 * 4 3 2 6 6 S 1.65604 * 119.99753 * 0.02562 * 5 4 3 7 7 O 1.42108 * 106.39869 * 178.53794 * 6 5 4 8 8 O 1.42096 * 106.40575 * 311.46124 * 6 5 4 9 9 C 1.76199 * 107.22052 * 65.00248 * 6 5 4 10 10 C 1.34673 * 126.58966 * 269.68852 * 9 6 5 11 11 N 1.34132 * 108.01829 * 179.87335 * 10 9 6 12 12 C 1.30493 * 109.25814 * 0.39518 * 11 10 9 13 13 C 1.50694 * 125.65006 * 179.73429 * 12 11 10 14 14 N 1.35042 * 108.70112 * 359.75765 * 12 11 10 15 15 C 1.46502 * 126.40039 * 180.02562 * 14 12 11 16 16 N 1.35240 * 107.56062 * 0.02562 * 4 3 2 17 17 C 1.46498 * 126.04466 * 180.02562 * 16 4 3 18 18 C 1.50696 * 109.47390 * 269.99895 * 17 16 4 19 19 H 1.08004 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00505 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00430 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99611 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47534 * 89.99769 * 22 20 18 24 24 H 1.48506 * 109.47213 * 209.99816 * 22 20 18 25 25 H 1.48502 * 109.47176 * 329.99446 * 22 20 18 26 26 N 1.30838 * 125.83641 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47362 * 270.00252 * 1 2 3 28 28 H 1.08998 * 109.46866 * 29.99770 * 1 2 3 29 29 H 1.08996 * 109.47434 * 149.99921 * 1 2 3 30 30 H 1.08007 * 126.09806 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00434 * 179.97438 * 5 4 3 32 32 H 1.07997 * 125.99058 * 0.02562 * 10 9 6 33 33 H 1.09002 * 109.47252 * 270.02592 * 13 12 11 34 34 H 1.08998 * 109.47138 * 30.02947 * 13 12 11 35 35 H 1.09006 * 109.47131 * 150.02184 * 13 12 11 36 36 H 1.08996 * 109.47012 * 269.99739 * 15 14 12 37 37 H 1.09000 * 109.46766 * 30.00011 * 15 14 12 38 38 H 1.09002 * 109.47489 * 149.99486 * 15 14 12 39 39 H 1.08995 * 109.47248 * 30.00436 * 17 16 4 40 40 H 1.09009 * 109.47221 * 150.00031 * 17 16 4 41 41 H 0.97002 * 120.00499 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0006 5 7 4.7500 1.5250 -0.0003 6 16 4.5840 3.1727 0.0015 7 8 5.8997 3.7085 0.0362 8 8 3.6452 3.4826 -1.0192 9 6 3.8248 3.6188 1.5277 10 6 2.5038 3.7299 1.7649 11 7 2.3411 4.0855 3.0480 12 6 3.5112 4.2071 3.6126 13 6 3.7580 4.5985 5.0467 14 7 4.4644 3.9248 2.6986 15 6 5.9127 3.9420 2.9192 16 7 3.6093 -0.6407 -0.0015 17 6 4.7867 -1.5123 -0.0018 18 6 5.1908 -1.8103 -1.4227 19 1 4.6272 -1.3918 -2.2435 20 6 6.2807 -2.6162 -1.6750 21 7 6.6337 -2.8758 -2.9149 22 14 7.2561 -3.3393 -0.2554 23 1 6.6820 -4.6565 0.1195 24 1 8.6721 -3.5156 -0.6667 25 1 7.1897 -2.4207 0.9095 26 7 2.2731 -1.0607 -0.0005 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.9905 2.1599 0.0004 31 1 5.6344 1.1268 -0.0004 32 1 1.7138 3.5599 1.0484 33 1 3.8469 5.6826 5.1174 34 1 2.9252 4.2612 5.6638 35 1 4.6804 4.1346 5.3964 36 1 6.3018 4.9361 2.6993 37 1 6.1249 3.6902 3.9582 38 1 6.3887 3.2123 2.2641 39 1 5.6081 -1.0136 0.5126 40 1 4.5491 -2.4443 0.5113 41 1 7.4002 -3.4431 -3.0925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600647567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:08 Heat of formation + Delta-G solvation = 44.119476 kcal Electronic energy + Delta-G solvation = -28096.649644 eV Core-core repulsion = 24140.865550 eV Total energy + Delta-G solvation = -3955.784094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.34254 -42.28436 -38.77549 -37.36342 -36.64697 -35.73578 -35.22981 -34.03512 -33.02891 -31.11086 -29.75384 -28.70011 -28.05385 -27.74462 -24.43331 -23.49724 -22.48288 -21.69795 -21.14039 -20.33714 -19.30683 -19.18428 -18.64448 -18.30854 -17.19510 -17.07492 -16.82844 -16.46012 -16.22629 -15.83049 -15.30201 -14.93256 -14.59752 -14.45149 -14.28431 -14.18973 -14.06455 -13.97428 -13.76412 -13.60912 -13.55971 -13.48437 -13.37026 -13.21255 -13.11960 -13.04763 -12.80876 -12.62214 -12.50676 -12.00204 -11.84598 -11.44199 -11.33191 -10.94824 -10.90652 -10.00550 -9.73555 -9.27766 -8.44363 -6.57134 -1.17128 0.22386 0.92201 1.28301 1.33462 1.34161 1.42572 1.57247 1.75192 1.81141 1.93262 2.21943 2.34333 2.87017 3.01139 3.30005 3.49818 3.68828 3.74319 3.78001 4.18171 4.23621 4.33082 4.42880 4.47290 4.51722 4.60677 4.64115 4.69394 4.77327 4.92715 4.94762 5.02041 5.12408 5.14630 5.18478 5.29065 5.41338 5.82842 5.90190 5.93237 6.26098 6.48113 6.66399 6.88023 7.07191 8.72199 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004403 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.152404 B = 6357.262188 C = 7180.045712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.082 3.918 3 C -0.334 4.334 4 C 0.329 3.671 5 N -1.027 6.027 6 S 2.746 3.254 7 O -0.952 6.952 8 O -0.948 6.948 9 C -0.620 4.620 10 C 0.113 3.887 11 N -0.525 5.525 12 C 0.257 3.743 13 C -0.076 4.076 14 N -0.408 5.408 15 C 0.039 3.961 16 N -0.360 5.360 17 C 0.236 3.764 18 C -0.557 4.557 19 H 0.025 0.975 20 C 0.022 3.978 21 N -0.934 5.934 22 Si 0.950 3.050 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.233 1.233 26 N -0.326 5.326 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.169 0.831 31 H 0.435 0.565 32 H 0.196 0.804 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 15.738 18.930 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C -0.367 4.367 4 C 0.103 3.897 5 N -0.778 5.778 6 S 2.834 3.166 7 O -0.942 6.942 8 O -0.937 6.937 9 C -0.820 4.820 10 C -0.045 4.045 11 N -0.244 5.244 12 C -0.007 4.007 13 C -0.134 4.134 14 N -0.089 5.089 15 C -0.101 4.101 16 N -0.144 5.144 17 C 0.116 3.884 18 C -0.595 4.595 19 H 0.044 0.956 20 C -0.178 4.178 21 N -0.572 5.572 22 Si 0.770 3.230 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.155 1.155 26 N -0.150 5.150 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.186 0.814 31 H 0.273 0.727 32 H 0.213 0.787 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.887 15.066 18.558 24.078 hybrid contribution 1.528 -0.376 -0.441 1.634 sum -1.360 14.691 18.117 23.365 Atomic orbital electron populations 1.20331 0.83525 1.04352 1.04347 1.22709 0.98722 0.89310 0.97680 1.21118 0.88499 1.01453 1.25640 1.17748 0.87852 0.83631 1.00470 1.53069 1.12704 1.25205 1.86793 1.00483 0.72881 0.70181 0.73038 1.93585 1.37575 1.75549 1.87537 1.93625 1.64729 1.82046 1.53323 1.32963 1.05702 1.31083 1.12227 1.22745 0.93223 0.94492 0.94055 1.70406 1.24917 1.22032 1.07064 1.24842 0.82874 0.97053 0.95980 1.20638 1.05540 1.04217 0.82974 1.45141 1.09255 1.47921 1.06554 1.22827 0.74093 1.06388 1.06806 1.48800 1.06310 1.02739 1.56539 1.19792 0.80637 0.90852 0.97162 1.21268 1.14218 1.32884 0.91155 0.95640 1.25856 0.97594 0.95277 0.99067 1.70030 1.27866 1.37647 1.21639 0.85708 0.77946 0.80132 0.79191 1.18939 1.19855 1.15539 1.77355 0.85882 1.23502 1.28283 0.88578 0.88270 0.90859 0.81404 0.72728 0.78745 0.87327 0.88008 0.87523 0.87585 0.84786 0.89419 0.91459 0.92659 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 10.44 71.24 0.74 -0.93 16 2 C 0.08 2.98 7.21 43.08 0.31 3.29 16 3 C -0.33 -12.03 8.83 22.16 0.20 -11.84 16 4 C 0.33 12.96 7.58 131.43 1.00 13.96 16 5 N -1.03 -34.52 5.87 -55.50 -0.33 -34.84 16 6 S 2.75 82.59 5.30 -56.49 -0.30 82.29 16 7 O -0.95 -28.72 15.95 -128.00 -2.04 -30.76 16 8 O -0.95 -33.36 16.04 -128.00 -2.05 -35.41 16 9 C -0.62 -16.29 6.69 83.09 0.56 -15.73 16 10 C 0.11 3.00 10.34 83.52 0.86 3.86 16 11 N -0.52 -13.45 11.25 -188.14 -2.12 -15.57 16 12 C 0.26 5.07 7.90 138.13 1.09 6.16 16 13 C -0.08 -0.65 10.19 71.23 0.73 0.08 16 14 N -0.41 -8.47 3.15 -534.55 -1.68 -10.15 16 15 C 0.04 0.52 10.11 127.77 1.29 1.82 16 16 N -0.36 -16.18 3.60 -348.92 -1.26 -17.44 16 17 C 0.24 10.91 5.07 85.63 0.43 11.35 16 18 C -0.56 -31.56 9.94 25.60 0.25 -31.30 16 19 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 20 C 0.02 1.24 5.47 84.66 0.46 1.70 16 21 N -0.93 -56.39 13.96 21.45 0.30 -56.09 16 22 Si 0.95 39.74 27.47 68.60 1.88 41.63 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.23 -8.39 6.54 99.48 0.65 -7.74 16 26 N -0.33 -14.41 12.56 -47.45 -0.60 -15.00 16 27 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.17 5.17 4.01 -2.91 -0.01 5.16 16 31 H 0.43 13.66 8.09 -96.75 -0.78 12.87 16 32 H 0.20 4.65 6.31 -2.91 -0.02 4.63 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.34 7.07 -2.38 -0.02 0.33 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 0.70 7.05 -2.39 -0.02 0.69 16 38 H 0.09 1.36 6.83 -2.39 -0.02 1.35 16 39 H 0.07 2.72 6.55 -2.39 -0.02 2.70 16 40 H 0.06 2.51 7.57 -2.38 -0.02 2.49 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.74 354.37 -0.01 -82.75 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.26 Total: 26.18 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 7.93 Total: -17.59 kcal Atomic # 7 Polarization: -143.41 SS G_CDS: -5.68 Total: -149.09 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -4.09 Total: -66.18 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.63 kcal Atomic # 16 Polarization: 82.59 SS G_CDS: -0.30 Total: 82.29 kcal Total: -82.74 -0.01 -82.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600647567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.870 kcal (2) G-P(sol) polarization free energy of solvation -82.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds