Wall clock time and date at job start Tue Mar 31 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.34669 * 126.59024 * 90.02571 * 9 6 5 11 11 N 1.34128 * 108.01983 * 179.97438 * 10 9 6 12 12 C 1.30499 * 109.25707 * 359.97438 * 11 10 9 13 13 C 1.50695 * 125.65393 * 179.97438 * 12 11 10 14 14 N 1.35046 * 108.69919 * 359.76688 * 12 11 10 15 15 C 1.46504 * 126.40061 * 180.26767 * 14 12 11 16 16 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 17 17 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 18 18 C 1.46498 * 125.97191 * 359.96192 * 17 2 1 19 19 C 1.50707 * 109.47366 * 90.00120 * 18 17 2 20 20 H 1.08005 * 119.99361 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00150 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46938 * 60.00555 * 23 21 19 25 25 H 1.48503 * 109.47106 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47611 * 300.00311 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 30 30 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 31 31 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 32 32 H 1.07997 * 125.99071 * 359.95788 * 10 9 6 33 33 H 1.09000 * 109.46939 * 90.02007 * 13 12 11 34 34 H 1.08996 * 109.47615 * 210.02321 * 13 12 11 35 35 H 1.09000 * 109.47177 * 330.02546 * 13 12 11 36 36 H 1.08997 * 109.47243 * 270.12271 * 15 14 12 37 37 H 1.09000 * 109.46874 * 30.12149 * 15 14 12 38 38 H 1.08997 * 109.47044 * 150.12019 * 15 14 12 39 39 H 1.09006 * 109.47531 * 210.00084 * 18 17 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 18 17 2 41 41 H 0.96996 * 119.99839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9528 0.4464 -2.6768 11 7 6.9274 -0.5248 -3.6015 12 6 6.4450 -1.6140 -3.0685 13 6 6.2534 -2.9291 -3.7788 14 7 6.1502 -1.3686 -1.7737 15 6 5.5925 -2.3236 -0.8129 16 7 3.6337 -0.6577 -0.0044 17 7 2.3016 -1.0909 -0.0060 18 6 1.8499 -2.4845 -0.0129 19 6 1.6942 -2.9551 -1.4361 20 1 1.9098 -2.2831 -2.2537 21 6 1.2766 -4.2435 -1.6944 22 7 1.0136 -5.0616 -0.6988 23 14 1.0831 -4.8266 -3.4584 24 1 2.3884 -4.7253 -4.1593 25 1 0.6253 -6.2392 -3.4654 26 1 0.0812 -3.9787 -4.1530 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1212 0.0007 31 1 4.6741 2.4387 0.0105 32 1 7.3014 1.4574 -2.8277 33 1 7.1554 -3.5324 -3.6760 34 1 5.4091 -3.4600 -3.3391 35 1 6.0572 -2.7463 -4.8353 36 1 4.5039 -2.2788 -0.8462 37 1 5.9226 -3.3306 -1.0682 38 1 5.9360 -2.0722 0.1905 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600652227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:12 Heat of formation + Delta-G solvation = 65.303570 kcal Electronic energy + Delta-G solvation = -28716.978221 eV Core-core repulsion = 24762.112738 eV Total energy + Delta-G solvation = -3954.865483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98040 -40.76429 -37.28580 -35.89698 -35.47503 -33.78758 -33.47628 -31.81928 -31.54831 -30.94748 -27.43279 -26.91328 -26.69256 -26.24146 -23.28452 -22.07711 -20.94053 -20.20034 -20.01262 -18.67497 -17.54780 -17.30401 -16.86917 -16.60020 -15.74891 -15.66853 -15.48962 -14.97176 -14.65245 -14.37926 -13.88115 -13.36416 -13.30174 -13.13381 -12.87834 -12.73480 -12.71096 -12.66024 -12.38509 -12.27115 -12.22687 -12.03110 -11.89814 -11.80658 -11.59136 -11.38265 -11.19349 -10.98074 -10.95752 -10.43034 -10.05886 -9.98123 -9.82608 -9.39217 -8.82095 -8.61725 -8.29265 -7.79122 -6.43644 -4.53291 0.30750 1.61858 2.46926 2.67637 2.96547 3.06117 3.08665 3.15423 3.17233 3.18819 3.44695 3.76125 4.13234 4.42682 4.48508 4.83911 4.93799 5.02380 5.12948 5.16955 5.47655 5.54400 5.61301 5.64382 5.86147 5.87691 5.93802 5.96738 5.99711 6.14104 6.31608 6.40798 6.46115 6.62451 6.67107 6.82546 6.98479 7.21947 7.24768 7.47197 7.67467 7.77838 7.98169 8.28250 8.54070 9.14661 10.63178 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005582 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.119849 B = 5014.983291 C = 6684.366242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.114 3.886 3 C -0.306 4.306 4 C 0.288 3.712 5 N -1.012 6.012 6 S 2.726 3.274 7 O -0.949 6.949 8 O -0.934 6.934 9 C -0.600 4.600 10 C 0.094 3.906 11 N -0.504 5.504 12 C 0.248 3.752 13 C -0.078 4.078 14 N -0.376 5.376 15 C 0.033 3.967 16 N -0.327 5.327 17 N -0.314 5.314 18 C 0.256 3.744 19 C -0.544 4.544 20 H 0.064 0.936 21 C 0.071 3.929 22 N -0.886 5.886 23 Si 0.902 3.098 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.432 0.568 32 H 0.182 0.818 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 8.489 -0.111 9.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.019 4.019 3 C -0.339 4.339 4 C 0.034 3.966 5 N -0.766 5.766 6 S 2.813 3.187 7 O -0.939 6.939 8 O -0.923 6.923 9 C -0.800 4.800 10 C -0.065 4.065 11 N -0.224 5.224 12 C -0.017 4.017 13 C -0.136 4.136 14 N -0.053 5.053 15 C -0.108 4.108 16 N -0.158 5.158 17 N -0.095 5.095 18 C 0.138 3.862 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.134 4.134 22 N -0.523 5.523 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.269 0.731 32 H 0.199 0.801 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.307 6.870 -0.047 8.681 hybrid contribution -1.128 0.559 -0.857 1.523 sum 4.179 7.429 -0.905 8.571 Atomic orbital electron populations 1.20438 0.87599 1.04165 1.02863 1.20933 0.94900 0.86922 0.99179 1.20578 0.89732 0.99049 1.24578 1.18546 0.86843 0.89819 1.01436 1.52605 1.20058 1.16452 1.87456 1.01091 0.71545 0.73202 0.72888 1.93619 1.59314 1.53858 1.87126 1.93566 1.85141 1.59814 1.53826 1.33169 1.26110 0.96555 1.24120 1.22265 0.97530 0.99317 0.87406 1.70299 1.21548 0.99223 1.31289 1.23803 0.98101 0.97651 0.82138 1.20348 1.03497 0.89007 1.00758 1.44968 1.42209 1.07776 1.10326 1.23184 1.04257 0.90365 0.92955 1.77217 1.00224 1.07637 1.30739 1.49021 1.00575 1.07942 1.51962 1.19795 0.96361 0.70973 0.99045 1.21237 1.47926 0.97972 0.91102 0.91777 1.24896 0.94467 0.96037 0.98003 1.69898 1.44048 1.07126 1.31228 0.86478 0.79014 0.77872 0.83752 1.19845 1.20861 1.19913 0.90719 0.89639 0.90465 0.84144 0.73109 0.80121 0.89755 0.89482 0.88900 0.85254 0.90149 0.86778 0.92702 0.92537 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.89 36.01 0.36 -0.93 16 2 C 0.11 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.31 -4.95 10.74 -39.82 -0.43 -5.38 16 4 C 0.29 5.05 7.72 -154.55 -1.19 3.86 16 5 N -1.01 -14.47 5.91 31.39 0.19 -14.29 16 6 S 2.73 43.15 5.59 -107.50 -0.60 42.55 16 7 O -0.95 -15.24 17.86 -57.17 -1.02 -16.26 16 8 O -0.93 -17.19 14.60 -57.17 -0.83 -18.02 16 9 C -0.60 -10.21 6.95 -16.56 -0.12 -10.33 16 10 C 0.09 1.54 11.64 -17.81 -0.21 1.33 16 11 N -0.50 -8.94 11.25 -10.82 -0.12 -9.06 16 12 C 0.25 4.25 7.90 -155.42 -1.23 3.02 16 13 C -0.08 -1.06 9.97 36.00 0.36 -0.70 16 14 N -0.38 -6.66 3.15 -120.31 -0.38 -7.04 16 15 C 0.03 0.59 9.08 59.85 0.54 1.13 16 16 N -0.33 -6.51 7.74 31.41 0.24 -6.27 16 17 N -0.31 -6.37 3.59 -58.32 -0.21 -6.58 16 18 C 0.26 5.72 5.38 -5.19 -0.03 5.69 16 19 C -0.54 -13.14 9.39 -34.44 -0.32 -13.46 16 20 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -22.64 13.29 55.43 0.74 -21.91 16 23 Si 0.90 19.24 29.54 -169.99 -5.02 14.22 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.43 4.49 8.96 -34.47 -0.31 4.19 16 32 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.13 2.61 5.33 -51.93 -0.28 2.33 16 37 H 0.08 1.21 7.67 -51.93 -0.40 0.82 16 38 H 0.11 2.06 5.63 -51.93 -0.29 1.77 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.27 7.65 -51.92 -0.40 0.87 16 41 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -31.22 358.51 -9.53 -40.75 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.98 Total: 9.23 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.93 Total: -12.72 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.45 Total: -65.15 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.86 Total: -34.28 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 43.15 SS G_CDS: -0.60 Total: 42.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.22 -9.53 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600652227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.049 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds