Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.34669 * 126.59024 * 90.02571 * 9 6 5 11 11 N 1.34128 * 108.01983 * 179.97438 * 10 9 6 12 12 C 1.30499 * 109.25707 * 359.97438 * 11 10 9 13 13 C 1.50695 * 125.65393 * 179.97438 * 12 11 10 14 14 N 1.35046 * 108.69919 * 359.76688 * 12 11 10 15 15 C 1.46504 * 126.40061 * 180.26767 * 14 12 11 16 16 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 17 17 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 18 18 C 1.46498 * 125.97191 * 359.96192 * 17 2 1 19 19 C 1.50707 * 109.47366 * 90.00120 * 18 17 2 20 20 H 1.08005 * 119.99361 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00150 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46938 * 60.00555 * 23 21 19 25 25 H 1.48503 * 109.47106 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47611 * 300.00311 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 30 30 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 31 31 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 32 32 H 1.07997 * 125.99071 * 359.95788 * 10 9 6 33 33 H 1.09000 * 109.46939 * 90.02007 * 13 12 11 34 34 H 1.08996 * 109.47615 * 210.02321 * 13 12 11 35 35 H 1.09000 * 109.47177 * 330.02546 * 13 12 11 36 36 H 1.08997 * 109.47243 * 270.12271 * 15 14 12 37 37 H 1.09000 * 109.46874 * 30.12149 * 15 14 12 38 38 H 1.08997 * 109.47044 * 150.12019 * 15 14 12 39 39 H 1.09006 * 109.47531 * 210.00084 * 18 17 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 18 17 2 41 41 H 0.96996 * 119.99839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9528 0.4464 -2.6768 11 7 6.9274 -0.5248 -3.6015 12 6 6.4450 -1.6140 -3.0685 13 6 6.2534 -2.9291 -3.7788 14 7 6.1502 -1.3686 -1.7737 15 6 5.5925 -2.3236 -0.8129 16 7 3.6337 -0.6577 -0.0044 17 7 2.3016 -1.0909 -0.0060 18 6 1.8499 -2.4845 -0.0129 19 6 1.6942 -2.9551 -1.4361 20 1 1.9098 -2.2831 -2.2537 21 6 1.2766 -4.2435 -1.6944 22 7 1.0136 -5.0616 -0.6988 23 14 1.0831 -4.8266 -3.4584 24 1 2.3884 -4.7253 -4.1593 25 1 0.6253 -6.2392 -3.4654 26 1 0.0812 -3.9787 -4.1530 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1212 0.0007 31 1 4.6741 2.4387 0.0105 32 1 7.3014 1.4574 -2.8277 33 1 7.1554 -3.5324 -3.6760 34 1 5.4091 -3.4600 -3.3391 35 1 6.0572 -2.7463 -4.8353 36 1 4.5039 -2.2788 -0.8462 37 1 5.9226 -3.3306 -1.0682 38 1 5.9360 -2.0722 0.1905 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600652227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = 44.823544 kcal Electronic energy + Delta-G solvation = -28717.866301 eV Core-core repulsion = 24762.112738 eV Total energy + Delta-G solvation = -3955.753563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.27500 -42.14855 -38.61078 -37.23703 -36.84127 -35.27477 -35.08723 -33.01678 -32.82507 -32.55449 -28.68311 -28.51957 -28.01659 -27.56735 -24.99642 -23.36123 -22.31345 -21.52940 -21.31487 -20.00961 -18.92075 -18.68387 -18.60231 -17.90638 -17.10997 -17.00797 -16.93616 -16.40363 -16.13249 -15.88929 -15.18096 -14.76289 -14.50128 -14.43459 -14.35747 -14.10004 -14.02812 -13.85364 -13.60722 -13.51072 -13.47464 -13.44186 -13.37353 -13.15809 -13.12330 -12.76624 -12.65438 -12.56606 -12.46267 -12.20387 -11.57953 -11.40391 -11.30697 -10.75978 -10.69737 -9.91105 -9.68036 -9.21334 -8.30395 -6.46825 -0.96475 0.32616 1.08075 1.34438 1.39186 1.42366 1.49622 1.65661 1.76321 1.86010 2.06792 2.35216 2.49058 3.00650 3.15075 3.30033 3.58711 3.77339 3.85727 3.92109 4.23841 4.39227 4.48365 4.50356 4.55440 4.62030 4.74265 4.83376 4.86718 4.94661 4.95997 5.02441 5.08896 5.12687 5.28083 5.39762 5.56536 5.73929 5.83459 5.92137 5.96287 6.25893 6.65084 6.68089 6.89715 7.24455 8.75121 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005582 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.119849 B = 5014.983291 C = 6684.366242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.100 3.900 3 C -0.298 4.298 4 C 0.283 3.717 5 N -0.996 5.996 6 S 2.746 3.254 7 O -0.950 6.950 8 O -0.961 6.961 9 C -0.616 4.616 10 C 0.092 3.908 11 N -0.522 5.522 12 C 0.238 3.762 13 C -0.077 4.077 14 N -0.387 5.387 15 C 0.040 3.960 16 N -0.355 5.355 17 N -0.339 5.339 18 C 0.274 3.726 19 C -0.545 4.545 20 H 0.050 0.950 21 C 0.032 3.968 22 N -0.914 5.914 23 Si 0.955 3.045 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.272 1.272 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.180 0.820 31 H 0.450 0.550 32 H 0.210 0.790 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 10.002 -1.112 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.330 4.330 4 C 0.027 3.973 5 N -0.754 5.754 6 S 2.832 3.168 7 O -0.939 6.939 8 O -0.951 6.951 9 C -0.815 4.815 10 C -0.067 4.067 11 N -0.242 5.242 12 C -0.027 4.027 13 C -0.135 4.135 14 N -0.064 5.064 15 C -0.101 4.101 16 N -0.186 5.186 17 N -0.121 5.121 18 C 0.155 3.845 19 C -0.583 4.583 20 H 0.068 0.932 21 C -0.169 4.169 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.197 1.197 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.197 0.803 31 H 0.291 0.709 32 H 0.227 0.773 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.162 8.437 -1.049 9.947 hybrid contribution -1.044 0.195 -0.528 1.186 sum 4.118 8.633 -1.577 9.694 Atomic orbital electron populations 1.20539 0.85319 1.04595 1.04181 1.21664 0.96552 0.86386 0.98473 1.21012 0.88644 1.00456 1.22893 1.18875 0.88222 0.89630 1.00552 1.52382 1.18728 1.17273 1.86983 1.00445 0.71550 0.72599 0.72190 1.93611 1.59544 1.53679 1.87085 1.93537 1.85679 1.60877 1.54999 1.33364 1.26756 0.96658 1.24718 1.22819 0.96656 1.00319 0.86858 1.70330 1.22321 0.99727 1.31777 1.24471 0.97434 0.98695 0.82071 1.20493 1.04417 0.87777 1.00847 1.45036 1.42691 1.08045 1.10589 1.23001 1.02726 0.91529 0.92823 1.77198 1.00289 1.09097 1.32012 1.48794 1.01341 1.07694 1.54241 1.19292 0.95139 0.72348 0.97713 1.21299 1.47506 0.97928 0.91554 0.93160 1.25543 0.94142 0.96081 1.01181 1.69982 1.44927 1.07415 1.32875 0.85647 0.79084 0.77462 0.79853 1.19236 1.20445 1.19722 0.88876 0.91802 0.87343 0.80287 0.70887 0.77296 0.87213 0.90243 0.87843 0.87697 0.88273 0.87619 0.95280 0.93166 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 9.89 71.24 0.70 -1.60 16 2 C 0.10 3.40 6.92 41.39 0.29 3.68 16 3 C -0.30 -8.92 10.74 22.11 0.24 -8.68 16 4 C 0.28 9.57 7.72 133.39 1.03 10.60 16 5 N -1.00 -26.84 5.91 -54.61 -0.32 -27.16 16 6 S 2.75 84.44 5.59 -56.49 -0.32 84.12 16 7 O -0.95 -28.89 17.86 -128.00 -2.29 -31.18 16 8 O -0.96 -35.49 14.60 -128.00 -1.87 -37.36 16 9 C -0.62 -20.52 6.95 83.09 0.58 -19.95 16 10 C 0.09 2.89 11.64 83.52 0.97 3.86 16 11 N -0.52 -17.87 11.25 -188.14 -2.12 -19.99 16 12 C 0.24 7.97 7.90 138.13 1.09 9.06 16 13 C -0.08 -2.01 9.97 71.23 0.71 -1.30 16 14 N -0.39 -13.61 3.15 -534.54 -1.68 -15.30 16 15 C 0.04 1.46 9.08 127.77 1.16 2.62 16 16 N -0.36 -14.24 7.74 -54.54 -0.42 -14.66 16 17 N -0.34 -13.93 3.59 -338.42 -1.22 -15.15 16 18 C 0.27 12.69 5.38 85.64 0.46 13.15 16 19 C -0.54 -26.87 9.39 25.60 0.24 -26.63 16 20 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 21 C 0.03 1.60 5.46 84.65 0.46 2.06 16 22 N -0.91 -47.46 13.29 21.45 0.28 -47.17 16 23 Si 0.95 39.28 29.54 68.60 2.03 41.30 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.96 7.71 -2.39 -0.02 1.94 16 29 H 0.11 2.12 8.14 -2.38 -0.02 2.11 16 30 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.45 8.21 8.96 -96.75 -0.87 7.34 16 32 H 0.21 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.08 2.19 7.72 -2.39 -0.02 2.17 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.10 4.40 5.33 -2.39 -0.01 4.39 16 37 H 0.10 3.05 7.67 -2.39 -0.02 3.03 16 38 H 0.11 3.96 5.63 -2.39 -0.01 3.94 16 39 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 2.35 7.65 -2.38 -0.02 2.33 16 41 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -67.30 358.51 0.23 -67.08 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.22 Total: 28.59 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 7.93 Total: -13.13 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -5.48 Total: -139.43 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -4.16 Total: -68.54 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 84.44 SS G_CDS: -0.32 Total: 84.12 kcal Total: -67.30 0.23 -67.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600652227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.901 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds