Wall clock time and date at job start Tue Mar 31 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47241 * 299.99868 * 3 2 1 6 6 H 1.48495 * 109.47532 * 59.99995 * 3 2 1 7 7 C 1.40051 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99609 * 179.72643 * 7 2 1 9 9 C 1.46369 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00330 * 354.66577 * 9 7 2 11 11 N 1.34780 * 120.00188 * 174.66660 * 9 7 2 12 12 C 1.46969 * 120.58944 * 4.89696 * 11 9 7 13 13 C 1.53808 * 108.39768 * 124.75783 * 12 11 9 14 14 N 1.46963 * 108.58099 * 49.63676 * 13 12 11 15 15 C 1.34774 * 120.59602 * 124.62856 * 14 13 12 16 16 O 1.21593 * 119.99709 * 185.31557 * 15 14 13 17 17 N 1.34777 * 119.99882 * 5.30426 * 15 14 13 18 18 C 1.40223 * 119.99860 * 176.48033 * 17 15 14 19 19 C 1.38964 * 120.08288 * 325.77791 * 18 17 15 20 20 F 1.35106 * 120.04456 * 359.97438 * 19 18 17 21 21 C 1.38349 * 119.91443 * 179.72402 * 19 18 17 22 22 C 1.38256 * 120.08276 * 0.57077 * 21 19 18 23 23 C 1.38274 * 120.16933 * 359.67894 * 22 21 19 24 24 C 1.38342 * 120.07930 * 0.04732 * 23 22 21 25 25 F 1.35105 * 120.03897 * 179.97438 * 24 23 22 26 26 C 1.46963 * 118.81026 * 304.64384 * 14 13 12 27 27 C 1.46958 * 120.59531 * 185.16977 * 11 9 7 28 28 H 0.96996 * 119.99359 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.60569 * 244.53889 * 12 11 9 30 30 H 1.09003 * 109.61240 * 5.04758 * 12 11 9 31 31 H 1.09003 * 109.74030 * 289.84185 * 13 12 11 32 32 H 1.09008 * 109.67143 * 169.38505 * 13 12 11 33 33 H 0.97000 * 120.00208 * 356.48339 * 17 15 14 34 34 H 1.07999 * 119.95558 * 180.25020 * 21 19 18 35 35 H 1.08001 * 119.91783 * 179.70294 * 22 21 19 36 36 H 1.07999 * 119.95723 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.61165 * 295.48376 * 26 14 13 38 38 H 1.09002 * 109.75128 * 175.05965 * 26 14 13 39 39 H 1.08995 * 109.61432 * 354.95213 * 27 11 9 40 40 H 1.09008 * 109.60726 * 115.28916 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3965 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0050 9 6 1.2751 -2.4805 -0.0005 10 8 0.0622 -2.4828 0.0979 11 7 1.9445 -3.6452 -0.1096 12 6 3.4140 -3.6650 -0.1214 13 6 3.8958 -4.6072 0.9947 14 7 3.1694 -5.8796 0.8795 15 6 3.8389 -7.0442 0.7697 16 8 3.2305 -8.0793 0.5780 17 7 5.1826 -7.0612 0.8721 18 6 5.8734 -8.2809 0.8318 19 6 5.3027 -9.4230 1.3803 20 9 4.0811 -9.3602 1.9540 21 6 5.9848 -10.6258 1.3335 22 6 7.2378 -10.6897 0.7525 23 6 7.8111 -9.5543 0.2103 24 6 7.1327 -8.3492 0.2483 25 9 7.6939 -7.2402 -0.2813 26 6 1.7000 -5.8593 0.8857 27 6 1.2181 -4.9175 -0.2247 28 1 -0.4849 0.8401 0.0004 29 1 3.7672 -4.0267 -1.0871 30 1 3.7949 -2.6593 0.0569 31 1 3.6954 -4.1583 1.9676 32 1 4.9658 -4.7858 0.8877 33 1 5.6719 -6.2299 0.9737 34 1 5.5402 -11.5147 1.7560 35 1 7.7699 -11.6290 0.7217 36 1 8.7898 -9.6082 -0.2431 37 1 1.3432 -5.4995 1.8508 38 1 1.3169 -6.8637 0.7055 39 1 0.1484 -4.7393 -0.1147 40 1 1.4161 -5.3649 -1.1988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602758978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:02 Heat of formation + Delta-G solvation = -91.881869 kcal Electronic energy + Delta-G solvation = -29548.782429 eV Core-core repulsion = 25000.967736 eV Total energy + Delta-G solvation = -4547.814693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.27528 -48.83267 -40.68144 -39.03320 -38.02616 -35.95634 -35.09673 -33.12077 -32.53457 -31.15246 -30.59196 -29.63825 -27.38860 -26.02610 -23.74850 -23.38101 -23.07294 -22.01011 -20.33623 -19.46313 -18.60351 -18.13522 -17.52865 -17.18029 -16.41823 -16.07660 -15.87728 -15.74675 -15.52828 -15.41084 -15.21860 -14.91906 -14.53612 -14.42604 -14.20287 -14.12531 -14.00850 -13.29965 -12.99912 -12.68392 -12.32327 -12.23752 -12.11597 -11.94522 -11.70276 -11.46641 -11.20463 -11.11264 -11.03762 -10.75175 -10.73628 -10.30213 -10.14781 -10.01953 -9.03650 -8.97544 -8.80236 -8.38168 -7.69556 -7.30404 -6.29208 -4.75144 0.63032 0.72834 2.34217 2.93522 3.06743 3.15156 3.18663 3.23424 3.49258 3.68666 4.00300 4.20024 4.35451 4.39091 4.42852 4.47023 4.79773 5.04251 5.15271 5.21221 5.34695 5.46370 5.53280 5.56618 5.58803 5.71268 5.81167 5.86306 5.89080 6.00348 6.04980 6.22374 6.29832 6.45982 6.51431 6.59828 6.80628 7.35571 7.44380 7.70620 8.00124 8.22056 8.41957 8.92540 9.29950 10.46850 10.65317 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.002734 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.469643 B =10237.732712 C =11263.133411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.559 3.441 10 O -0.574 6.574 11 N -0.642 5.642 12 C 0.111 3.889 13 C 0.093 3.907 14 N -0.613 5.613 15 C 0.701 3.299 16 O -0.564 6.564 17 N -0.683 5.683 18 C 0.105 3.895 19 C 0.128 3.872 20 F -0.104 7.104 21 C -0.148 4.148 22 C -0.083 4.083 23 C -0.146 4.146 24 C 0.095 3.905 25 F -0.130 7.130 26 C 0.118 3.882 27 C 0.106 3.894 28 H 0.269 0.731 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.411 0.589 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.512 -17.170 2.724 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.381 5.381 12 C -0.015 4.015 13 C -0.032 4.032 14 N -0.350 5.350 15 C 0.403 3.597 16 O -0.440 6.440 17 N -0.334 5.334 18 C 0.006 3.994 19 C 0.105 3.895 20 F -0.081 7.081 21 C -0.168 4.168 22 C -0.103 4.103 23 C -0.166 4.166 24 C 0.073 3.927 25 F -0.108 7.108 26 C -0.006 4.006 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.053 -17.650 2.655 24.006 hybrid contribution 0.762 1.531 -0.015 1.710 sum 16.815 -16.120 2.640 23.443 Atomic orbital electron populations 1.70017 1.07103 1.27374 1.34931 1.25738 0.94634 1.00379 0.92536 0.86317 0.80436 0.81730 0.78307 1.18715 1.20137 1.20109 1.20972 0.93514 0.89160 1.54462 0.90854 1.18302 0.86959 0.82104 0.76132 1.90602 1.14374 1.85863 1.54803 1.48186 1.04253 1.06007 1.79672 1.21866 0.83565 1.00315 0.95762 1.22341 0.94694 0.84513 1.01627 1.47221 1.07549 1.04364 1.75827 1.15776 0.80711 0.84571 0.78639 1.90989 1.66869 1.30969 1.55137 1.42724 1.06355 1.07457 1.76875 1.17504 0.92737 0.87141 1.02001 1.17243 0.82525 0.93069 0.96621 1.91662 1.38961 1.96751 1.80774 1.21161 0.95995 0.96667 1.02928 1.20796 0.94313 0.98384 0.96761 1.21028 1.01563 0.90731 1.03268 1.17151 0.92179 0.84138 0.99244 1.91522 1.84493 1.50830 1.83971 1.22038 0.76761 1.01555 1.00217 1.21544 0.99235 0.85032 0.96048 0.92009 0.93359 0.87443 0.90322 0.91001 0.74909 0.83785 0.83908 0.83733 0.91150 0.88649 0.88390 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.30 11.84 55.55 0.66 -21.64 16 2 C 0.09 2.34 5.50 -17.36 -0.10 2.24 16 3 Si 0.91 19.27 29.56 -169.99 -5.02 14.25 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.54 -14.50 8.87 -35.63 -0.32 -14.81 16 8 H 0.07 1.75 5.66 -52.48 -0.30 1.45 16 9 C 0.56 15.25 7.61 -12.99 -0.10 15.15 16 10 O -0.57 -18.02 14.45 5.20 0.08 -17.94 16 11 N -0.64 -13.97 2.94 -173.88 -0.51 -14.48 16 12 C 0.11 1.89 6.51 -3.37 -0.02 1.87 16 13 C 0.09 1.29 6.57 -3.37 -0.02 1.27 16 14 N -0.61 -9.62 2.95 -177.94 -0.52 -10.15 16 15 C 0.70 11.21 7.74 -86.92 -0.67 10.54 16 16 O -0.56 -10.57 12.21 5.28 0.06 -10.50 16 17 N -0.68 -8.86 5.15 -14.11 -0.07 -8.93 16 18 C 0.10 1.28 6.29 -83.48 -0.52 0.76 16 19 C 0.13 1.59 6.68 -39.27 -0.26 1.33 16 20 F -0.10 -1.60 13.44 2.25 0.03 -1.57 16 21 C -0.15 -1.29 10.02 -39.53 -0.40 -1.68 16 22 C -0.08 -0.54 10.04 -39.56 -0.40 -0.94 16 23 C -0.15 -1.08 10.02 -39.53 -0.40 -1.48 16 24 C 0.10 0.96 7.31 -39.28 -0.29 0.68 16 25 F -0.13 -1.36 16.95 2.25 0.04 -1.32 16 26 C 0.12 1.99 6.59 -3.60 -0.02 1.96 16 27 C 0.11 2.07 6.60 -3.60 -0.02 2.05 16 28 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.86 5.34 -51.93 -0.28 1.58 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.75 5.62 -51.92 -0.29 0.46 16 33 H 0.41 4.39 6.12 -40.82 -0.25 4.14 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.58 7.00 -51.93 -0.36 1.22 16 39 H 0.10 2.09 6.99 -51.93 -0.36 1.73 16 40 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -35.81 338.93 -7.63 -43.45 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.94 Total: 4.81 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: -3.54 Total: 18.93 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.45 Total: -55.20 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: 0.14 Total: -28.45 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.07 Total: -2.89 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.81 -7.63 -43.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602758978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.436 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds