Wall clock time and date at job start Tue Mar 31 2020 22:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48500 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47134 * 300.00218 * 3 2 1 6 6 H 1.48503 * 109.46876 * 60.00412 * 3 2 1 7 7 C 1.40049 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00387 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99625 * 5.09597 * 9 7 2 11 11 N 1.34777 * 119.99711 * 185.10047 * 9 7 2 12 12 C 1.46967 * 120.58976 * 174.91390 * 11 9 7 13 13 C 1.53371 * 108.63700 * 235.24856 * 12 11 9 14 14 N 1.46966 * 108.63170 * 310.58076 * 13 12 11 15 15 C 1.34778 * 120.58938 * 235.20157 * 14 13 12 16 16 O 1.21589 * 120.00339 * 354.91895 * 15 14 13 17 17 N 1.34773 * 119.99900 * 174.92371 * 15 14 13 18 18 C 1.39939 * 119.99909 * 185.41732 * 17 15 14 19 19 C 1.38844 * 120.04242 * 214.48254 * 18 17 15 20 20 C 1.38356 * 119.95217 * 179.80975 * 19 18 17 21 21 F 1.35099 * 119.97553 * 180.18868 * 20 19 18 22 22 C 1.38467 * 120.04339 * 0.45176 * 20 19 18 23 23 C 1.38470 * 120.09246 * 359.78384 * 22 20 19 24 24 F 1.35095 * 119.97791 * 179.97438 * 23 22 20 25 25 C 1.38350 * 120.04135 * 0.02562 * 23 22 20 26 26 C 1.46958 * 118.81299 * 55.47642 * 14 13 12 27 27 C 1.46958 * 120.59591 * 354.93750 * 11 9 7 28 28 H 0.97001 * 120.00048 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.60870 * 115.50253 * 12 11 9 30 30 H 1.09003 * 109.74923 * 355.07670 * 12 11 9 31 31 H 1.09000 * 109.61068 * 190.83354 * 13 12 11 32 32 H 1.09001 * 109.74656 * 70.40338 * 13 12 11 33 33 H 0.97001 * 120.00467 * 5.41360 * 17 15 14 34 34 H 1.07996 * 120.02423 * 0.03189 * 19 18 17 35 35 H 1.08001 * 119.95395 * 179.76620 * 22 20 19 36 36 H 1.07996 * 120.01988 * 180.02562 * 25 23 22 37 37 H 1.09006 * 109.61282 * 64.26976 * 26 14 13 38 38 H 1.09009 * 109.60548 * 184.77772 * 26 14 13 39 39 H 1.08997 * 109.60980 * 244.49097 * 27 11 9 40 40 H 1.08999 * 109.60955 * 4.84055 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8821 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0017 10 8 0.0618 -2.4825 -0.0958 11 7 1.9449 -3.6455 0.1016 12 6 1.2189 -4.9184 0.2137 13 6 1.6964 -5.6454 1.4769 14 7 3.1659 -5.6655 1.4799 15 6 3.8357 -6.8304 1.5840 16 8 3.2277 -7.8669 1.7693 17 7 5.1796 -6.8464 1.4828 18 6 5.8663 -8.0656 1.4772 19 6 7.1188 -8.1607 2.0688 20 6 7.7944 -9.3681 2.0656 21 9 9.0115 -9.4621 2.6445 22 6 7.2264 -10.4787 1.4647 23 6 5.9796 -10.3848 0.8698 24 9 5.4278 -11.4697 0.2837 25 6 5.2990 -9.1803 0.8743 26 6 3.8919 -4.3921 1.3734 27 6 3.4144 -3.6656 0.1045 28 1 -0.4850 0.8401 0.0004 29 1 1.4229 -5.5343 -0.6621 30 1 0.1482 -4.7266 0.2847 31 1 1.3165 -6.6670 1.4767 32 1 1.3359 -5.1212 2.3620 33 1 5.6708 -6.0128 1.4139 34 1 7.5637 -7.2937 2.5344 35 1 7.7568 -11.4196 1.4597 36 1 4.3264 -9.1075 0.4106 37 1 3.6842 -3.7782 2.2498 38 1 4.9624 -4.5861 1.3048 39 1 3.7748 -4.1924 -0.7790 40 1 3.7942 -2.6440 0.1018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:41 Heat of formation + Delta-G solvation = -98.861813 kcal Electronic energy + Delta-G solvation = -28791.799353 eV Core-core repulsion = 24243.681987 eV Total energy + Delta-G solvation = -4548.117366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.33360 -49.23163 -41.05881 -39.12278 -37.98966 -36.01979 -35.03355 -33.18741 -32.58978 -31.23266 -30.65123 -29.81980 -27.46820 -26.12318 -23.87468 -23.40827 -23.12700 -22.08441 -20.45295 -19.51243 -18.83079 -18.10210 -17.25803 -16.79912 -16.43367 -16.37948 -16.27080 -15.94089 -15.87799 -15.57235 -15.29743 -15.06136 -14.61668 -14.50883 -14.33490 -14.20745 -14.09089 -13.53211 -13.12552 -12.79411 -12.45525 -12.28904 -12.24229 -12.04265 -11.78566 -11.52996 -11.27200 -11.16351 -11.09558 -10.83561 -10.63154 -10.35060 -10.23640 -10.14946 -9.08486 -9.02996 -8.90991 -8.56927 -7.74702 -7.38299 -6.33694 -4.80111 0.61908 0.67913 2.22818 2.78161 3.03361 3.11742 3.15178 3.21544 3.39500 3.70450 3.95397 4.05204 4.31850 4.41709 4.48342 4.53549 4.69730 4.84144 5.02817 5.12617 5.25347 5.44821 5.48722 5.49027 5.53651 5.63986 5.74105 5.81711 5.82575 5.92687 6.02746 6.14763 6.21609 6.39975 6.45691 6.53337 6.72054 7.30850 7.37912 7.60138 7.94287 8.15915 8.27650 8.87915 9.23998 10.41817 10.60384 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002400 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.572621 B =11663.158861 C =12623.962376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.558 3.442 10 O -0.573 6.573 11 N -0.642 5.642 12 C 0.107 3.893 13 C 0.116 3.884 14 N -0.613 5.613 15 C 0.706 3.294 16 O -0.574 6.574 17 N -0.687 5.687 18 C 0.236 3.764 19 C -0.198 4.198 20 C 0.152 3.848 21 F -0.130 7.130 22 C -0.215 4.215 23 C 0.153 3.847 24 F -0.128 7.128 25 C -0.167 4.167 26 C 0.092 3.908 27 C 0.109 3.891 28 H 0.270 0.730 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.145 -13.741 3.461 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.381 5.381 12 C -0.018 4.018 13 C -0.008 4.008 14 N -0.348 5.348 15 C 0.409 3.591 16 O -0.451 6.451 17 N -0.337 5.337 18 C 0.139 3.861 19 C -0.220 4.220 20 C 0.132 3.868 21 F -0.108 7.108 22 C -0.235 4.235 23 C 0.133 3.867 24 F -0.106 7.106 25 C -0.189 4.189 26 C -0.032 4.032 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.252 0.748 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.744 -14.308 3.519 20.844 hybrid contribution 0.996 1.055 0.041 1.452 sum 15.740 -13.253 3.559 20.882 Atomic orbital electron populations 1.70013 1.07110 1.27438 1.34788 1.25737 0.94634 1.00390 0.92533 0.86320 0.80404 0.81734 0.78350 1.18717 1.20095 1.20124 1.20959 0.93488 0.89133 1.54543 0.90835 1.18311 0.86965 0.82080 0.76184 1.90609 1.14361 1.85839 1.54749 1.48190 1.04229 1.05957 1.79739 1.21540 0.99288 0.86098 0.94884 1.22091 0.76694 1.02324 0.99645 1.47332 1.07701 1.04559 1.75251 1.15776 0.80824 0.84500 0.78049 1.90944 1.66913 1.31263 1.55979 1.42872 1.06312 1.07576 1.76924 1.16727 0.90417 0.85737 0.93215 1.20797 0.96796 0.98413 1.06015 1.16786 0.81314 0.93323 0.95418 1.91540 1.40612 1.96768 1.81875 1.20937 0.96844 1.00308 1.05449 1.16967 0.91364 0.83414 0.94995 1.91544 1.85112 1.52520 1.81443 1.21192 1.03103 0.91188 1.03408 1.22376 0.94682 0.84828 1.01351 1.21874 0.83604 1.01939 0.94249 0.91963 0.93459 0.88348 0.88635 0.91024 0.74805 0.83643 0.83436 0.82668 0.90037 0.90860 0.93397 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.77 11.84 55.55 0.66 -21.11 16 2 C 0.09 2.27 5.50 -17.36 -0.10 2.18 16 3 Si 0.91 18.70 29.56 -169.99 -5.02 13.67 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -13.98 8.88 -35.63 -0.32 -14.30 16 8 H 0.07 1.67 5.63 -52.49 -0.30 1.38 16 9 C 0.56 14.68 7.62 -12.99 -0.10 14.58 16 10 O -0.57 -17.54 14.47 5.20 0.08 -17.47 16 11 N -0.64 -13.12 2.95 -173.88 -0.51 -13.64 16 12 C 0.11 1.93 6.58 -3.60 -0.02 1.91 16 13 C 0.12 1.78 6.58 -3.60 -0.02 1.75 16 14 N -0.61 -8.39 2.94 -177.94 -0.52 -8.92 16 15 C 0.71 9.65 8.02 -86.92 -0.70 8.95 16 16 O -0.57 -9.56 13.56 5.29 0.07 -9.49 16 17 N -0.69 -7.02 5.25 -14.24 -0.07 -7.09 16 18 C 0.24 2.45 6.25 -83.71 -0.52 1.92 16 19 C -0.20 -1.70 9.94 -39.31 -0.39 -2.09 16 20 C 0.15 1.36 7.30 -39.45 -0.29 1.07 16 21 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 22 C -0.21 -1.93 10.00 -39.41 -0.39 -2.33 16 23 C 0.15 1.62 7.30 -39.45 -0.29 1.33 16 24 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 25 C -0.17 -1.94 8.63 -39.32 -0.34 -2.28 16 26 C 0.09 1.11 6.62 -3.37 -0.02 1.08 16 27 C 0.11 1.68 6.52 -3.37 -0.02 1.66 16 28 H 0.27 6.95 8.29 -40.82 -0.34 6.62 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.99 7.03 -51.93 -0.36 1.62 16 31 H 0.10 1.43 7.02 -51.93 -0.36 1.06 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 3.03 6.27 -40.82 -0.26 2.77 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 2.06 6.52 -52.49 -0.34 1.71 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.58 5.55 -51.92 -0.29 0.30 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.72 5.29 -51.93 -0.27 1.44 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -33.70 342.43 -7.47 -41.17 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.86 Total: 4.79 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: -3.52 Total: 15.45 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.45 Total: -50.75 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: 0.15 Total: -26.95 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.70 -7.47 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.693 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds