Wall clock time and date at job start Tue Mar 31 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48500 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47134 * 300.00218 * 3 2 1 6 6 H 1.48503 * 109.46876 * 60.00412 * 3 2 1 7 7 C 1.40049 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00387 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99625 * 5.09597 * 9 7 2 11 11 N 1.34777 * 119.99711 * 185.10047 * 9 7 2 12 12 C 1.46967 * 120.58976 * 174.91390 * 11 9 7 13 13 C 1.53371 * 108.63700 * 235.24856 * 12 11 9 14 14 N 1.46966 * 108.63170 * 310.58076 * 13 12 11 15 15 C 1.34778 * 120.58938 * 235.20157 * 14 13 12 16 16 O 1.21589 * 120.00339 * 354.91895 * 15 14 13 17 17 N 1.34773 * 119.99900 * 174.92371 * 15 14 13 18 18 C 1.39939 * 119.99909 * 185.41732 * 17 15 14 19 19 C 1.38844 * 120.04242 * 214.48254 * 18 17 15 20 20 C 1.38356 * 119.95217 * 179.80975 * 19 18 17 21 21 F 1.35099 * 119.97553 * 180.18868 * 20 19 18 22 22 C 1.38467 * 120.04339 * 0.45176 * 20 19 18 23 23 C 1.38470 * 120.09246 * 359.78384 * 22 20 19 24 24 F 1.35095 * 119.97791 * 179.97438 * 23 22 20 25 25 C 1.38350 * 120.04135 * 0.02562 * 23 22 20 26 26 C 1.46958 * 118.81299 * 55.47642 * 14 13 12 27 27 C 1.46958 * 120.59591 * 354.93750 * 11 9 7 28 28 H 0.97001 * 120.00048 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.60870 * 115.50253 * 12 11 9 30 30 H 1.09003 * 109.74923 * 355.07670 * 12 11 9 31 31 H 1.09000 * 109.61068 * 190.83354 * 13 12 11 32 32 H 1.09001 * 109.74656 * 70.40338 * 13 12 11 33 33 H 0.97001 * 120.00467 * 5.41360 * 17 15 14 34 34 H 1.07996 * 120.02423 * 0.03189 * 19 18 17 35 35 H 1.08001 * 119.95395 * 179.76620 * 22 20 19 36 36 H 1.07996 * 120.01988 * 180.02562 * 25 23 22 37 37 H 1.09006 * 109.61282 * 64.26976 * 26 14 13 38 38 H 1.09009 * 109.60548 * 184.77772 * 26 14 13 39 39 H 1.08997 * 109.60980 * 244.49097 * 27 11 9 40 40 H 1.08999 * 109.60955 * 4.84055 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8821 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0017 10 8 0.0618 -2.4825 -0.0958 11 7 1.9449 -3.6455 0.1016 12 6 1.2189 -4.9184 0.2137 13 6 1.6964 -5.6454 1.4769 14 7 3.1659 -5.6655 1.4799 15 6 3.8357 -6.8304 1.5840 16 8 3.2277 -7.8669 1.7693 17 7 5.1796 -6.8464 1.4828 18 6 5.8663 -8.0656 1.4772 19 6 7.1188 -8.1607 2.0688 20 6 7.7944 -9.3681 2.0656 21 9 9.0115 -9.4621 2.6445 22 6 7.2264 -10.4787 1.4647 23 6 5.9796 -10.3848 0.8698 24 9 5.4278 -11.4697 0.2837 25 6 5.2990 -9.1803 0.8743 26 6 3.8919 -4.3921 1.3734 27 6 3.4144 -3.6656 0.1045 28 1 -0.4850 0.8401 0.0004 29 1 1.4229 -5.5343 -0.6621 30 1 0.1482 -4.7266 0.2847 31 1 1.3165 -6.6670 1.4767 32 1 1.3359 -5.1212 2.3620 33 1 5.6708 -6.0128 1.4139 34 1 7.5637 -7.2937 2.5344 35 1 7.7568 -11.4196 1.4597 36 1 4.3264 -9.1075 0.4106 37 1 3.6842 -3.7782 2.2498 38 1 4.9624 -4.5861 1.3048 39 1 3.7748 -4.1924 -0.7790 40 1 3.7942 -2.6440 0.1018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:40 Heat of formation + Delta-G solvation = -121.164262 kcal Electronic energy + Delta-G solvation = -28792.766460 eV Core-core repulsion = 24243.681987 eV Total energy + Delta-G solvation = -4549.084472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.06679 -50.02768 -42.07764 -40.27294 -39.34267 -37.57327 -35.99293 -34.80470 -34.45229 -32.50520 -31.41426 -30.71346 -29.06205 -27.74823 -25.03110 -24.47374 -23.99669 -23.34292 -21.76822 -20.71056 -19.91950 -19.27788 -18.25095 -17.95182 -17.60685 -17.52434 -17.31887 -17.04486 -16.82782 -16.45675 -16.34313 -16.29727 -15.98830 -15.83114 -15.66248 -15.34643 -15.26751 -14.68744 -14.45479 -14.01245 -13.62858 -13.50072 -13.30815 -13.13728 -13.04711 -12.94155 -12.81379 -12.75834 -12.38904 -12.28284 -11.97792 -11.90958 -11.52828 -11.31090 -10.93618 -10.18338 -9.83899 -9.77185 -9.44290 -8.98938 -8.27530 -6.81906 -0.13632 -0.09133 1.23643 1.43328 1.44755 1.61500 1.80143 2.24857 2.38016 2.45556 2.48842 2.81789 2.92146 3.29404 3.60956 3.78584 3.82268 3.87997 3.92825 3.95977 4.08994 4.11875 4.25478 4.46357 4.50226 4.66840 4.74034 4.75743 4.77354 4.87556 4.94874 5.01585 5.06307 5.19447 5.27811 5.42935 5.69342 5.74253 5.75677 6.13929 6.34634 6.64545 6.90492 7.24177 7.41149 8.47336 8.68858 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002400 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.572621 B =11663.158861 C =12623.962376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.994 3.006 4 H -0.237 1.237 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.562 4.562 8 H 0.103 0.897 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.645 5.645 12 C 0.110 3.890 13 C 0.130 3.870 14 N -0.614 5.614 15 C 0.708 3.292 16 O -0.607 6.607 17 N -0.669 5.669 18 C 0.224 3.776 19 C -0.178 4.178 20 C 0.151 3.849 21 F -0.127 7.127 22 C -0.204 4.204 23 C 0.140 3.860 24 F -0.137 7.137 25 C -0.181 4.181 26 C 0.099 3.901 27 C 0.103 3.897 28 H 0.272 0.728 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.428 0.572 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.432 -13.366 4.263 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.159 1.159 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.598 4.598 8 H 0.121 0.879 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.382 5.382 12 C -0.015 4.015 13 C 0.006 3.994 14 N -0.349 5.349 15 C 0.411 3.589 16 O -0.486 6.486 17 N -0.321 5.321 18 C 0.127 3.873 19 C -0.200 4.200 20 C 0.130 3.870 21 F -0.106 7.106 22 C -0.225 4.225 23 C 0.120 3.880 24 F -0.115 7.115 25 C -0.203 4.203 26 C -0.024 4.024 27 C -0.021 4.021 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.271 0.729 34 H 0.193 0.807 35 H 0.184 0.816 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.140 -13.974 4.324 24.090 hybrid contribution -0.281 0.789 -0.230 0.869 sum 18.859 -13.185 4.094 23.373 Atomic orbital electron populations 1.70207 1.09718 1.28804 1.36742 1.27009 0.95408 1.05070 0.91251 0.85010 0.79935 0.75553 0.78080 1.15907 1.20151 1.19837 1.21524 0.95044 0.89225 1.54047 0.87880 1.18751 0.86563 0.84118 0.75842 1.90561 1.16904 1.87244 1.57253 1.48021 1.06577 1.05105 1.78471 1.21528 0.97606 0.85564 0.96790 1.21749 0.78281 1.01778 0.97585 1.47249 1.06882 1.05371 1.75420 1.15821 0.81772 0.83688 0.77639 1.90935 1.67974 1.32385 1.57300 1.42573 1.04935 1.08395 1.76167 1.16762 0.91138 0.85305 0.94082 1.20989 0.95493 0.99215 1.04296 1.16817 0.81383 0.93425 0.95339 1.91556 1.40441 1.96757 1.81800 1.21110 0.95968 1.01315 1.04062 1.17041 0.92092 0.82995 0.95917 1.91520 1.85386 1.52857 1.81751 1.21127 1.02552 0.92374 1.04269 1.22417 0.97137 0.83587 0.99235 1.22137 0.80256 1.02813 0.96905 0.91765 0.92603 0.91458 0.88290 0.91677 0.72921 0.80714 0.81596 0.84961 0.90191 0.85783 0.91731 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.66 11.84 21.84 0.26 -48.40 16 2 C 0.03 1.44 5.50 85.30 0.47 1.91 16 3 Si 0.99 37.82 29.56 68.60 2.03 39.85 16 4 H -0.24 -7.89 7.11 99.48 0.71 -7.18 16 5 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.56 -28.86 8.88 24.83 0.22 -28.64 16 8 H 0.10 4.48 5.63 -2.91 -0.02 4.47 16 9 C 0.54 29.31 7.62 86.36 0.66 29.97 16 10 O -0.63 -40.90 14.47 -4.30 -0.06 -40.96 16 11 N -0.64 -26.55 2.95 -822.25 -2.42 -28.98 16 12 C 0.11 4.10 6.58 86.41 0.57 4.67 16 13 C 0.13 4.02 6.58 86.41 0.57 4.58 16 14 N -0.61 -15.70 2.94 -835.14 -2.46 -18.15 16 15 C 0.71 17.99 8.02 179.06 1.44 19.42 16 16 O -0.61 -19.83 13.56 -3.99 -0.05 -19.89 16 17 N -0.67 -11.53 5.25 -317.22 -1.67 -13.19 16 18 C 0.22 4.05 6.25 38.14 0.24 4.29 16 19 C -0.18 -2.37 9.94 22.44 0.22 -2.15 16 20 C 0.15 2.20 7.30 22.35 0.16 2.36 16 21 F -0.13 -1.87 17.27 44.97 0.78 -1.10 16 22 C -0.20 -3.19 10.00 22.38 0.22 -2.97 16 23 C 0.14 2.81 7.30 22.35 0.16 2.97 16 24 F -0.14 -3.04 17.27 44.97 0.78 -2.26 16 25 C -0.18 -4.04 8.63 22.44 0.19 -3.85 16 26 C 0.10 2.08 6.62 86.57 0.57 2.65 16 27 C 0.10 2.95 6.52 86.57 0.56 3.52 16 28 H 0.27 14.62 8.29 -92.71 -0.77 13.86 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.93 7.03 -2.39 -0.02 2.91 16 31 H 0.10 3.00 7.02 -2.39 -0.02 2.98 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.43 4.26 6.27 -92.71 -0.58 3.68 16 34 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.13 3.57 6.52 -2.91 -0.02 3.55 16 37 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.12 1.33 5.55 -2.38 -0.01 1.32 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 3.11 5.29 -2.39 -0.01 3.10 16 Total: -1.00 -78.27 342.43 3.99 -74.28 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.55 Total: 20.06 kcal Atomic # 6 Polarization: 32.48 SS G_CDS: 6.26 Total: 38.74 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.29 Total: -108.73 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -0.12 Total: -60.85 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 1.55 Total: -3.36 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -78.27 3.99 -74.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.884 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds