Wall clock time and date at job start Tue Mar 31 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47056 * 2 1 4 4 C 1.50708 * 109.46866 * 119.99786 * 2 1 3 5 5 N 1.30495 * 125.64724 * 94.97773 * 4 2 1 6 6 C 1.34136 * 109.25040 * 179.77537 * 5 4 2 7 7 C 1.34669 * 108.01869 * 0.39493 * 6 5 4 8 8 S 1.76204 * 126.58503 * 179.87373 * 7 6 5 9 9 O 1.42104 * 106.39598 * 156.14641 * 8 7 6 10 10 O 1.42098 * 106.40117 * 23.23229 * 8 7 6 11 11 N 1.65594 * 107.22039 * 269.68664 * 8 7 6 12 12 C 1.39989 * 119.99656 * 65.00173 * 11 8 7 13 13 C 1.40432 * 125.97226 * 180.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.70499 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31219 * 125.97824 * 359.97438 * 12 11 8 26 26 N 1.35047 * 125.64703 * 274.99781 * 4 2 1 27 27 H 0.97002 * 126.39604 * 359.97438 * 26 4 2 28 28 H 1.09003 * 109.46944 * 60.00403 * 1 2 3 29 29 H 1.09003 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47089 * 300.00464 * 1 2 3 31 31 H 1.09002 * 109.47089 * 239.99536 * 2 1 3 32 32 H 1.08999 * 109.46993 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46915 * 299.99614 * 3 2 1 34 34 H 1.09002 * 109.47551 * 59.99818 * 3 2 1 35 35 H 1.07996 * 125.98510 * 180.25144 * 6 5 4 36 36 H 0.96996 * 120.00453 * 245.00506 * 11 8 7 37 37 H 1.07997 * 126.07138 * 0.02562 * 13 12 11 38 38 H 1.07992 * 126.07316 * 180.25997 * 14 13 12 39 39 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 40 40 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 41 41 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 2.3725 -1.9685 1.2968 6 6 2.7751 -2.2526 2.5444 7 6 2.6724 -1.1300 3.2811 8 16 3.0710 -0.9542 4.9884 9 8 3.3511 0.4236 5.1951 10 8 3.9954 -1.9894 5.2933 11 7 1.6961 -1.2863 5.8496 12 6 1.1451 -2.5728 5.8195 13 6 -0.0112 -2.9909 6.4979 14 6 -0.2133 -4.2964 6.2076 15 7 0.7796 -4.6960 5.3854 16 6 0.9474 -6.0409 4.8292 17 6 1.0284 -5.9566 3.3266 18 1 0.9619 -4.9972 2.8353 19 6 1.1873 -7.1043 2.5793 20 7 1.2735 -8.2721 3.1780 21 14 1.2884 -6.9997 0.7170 22 1 -0.0749 -7.1170 0.1400 23 1 1.8809 -5.6955 0.3259 24 1 2.1394 -8.1035 0.2046 25 7 1.6181 -3.5986 5.1518 26 7 2.2045 -0.1505 2.4474 27 1 2.0293 0.7732 2.6859 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1189 -3.2139 2.8968 36 1 1.2726 -0.5894 6.3748 37 1 -0.6321 -2.3776 7.1340 38 1 -1.0235 -4.9107 6.5713 39 1 0.0965 -6.6602 5.1129 40 1 1.8644 -6.4832 5.2182 41 1 1.2213 -8.3265 4.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610479035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:28 Heat of formation + Delta-G solvation = 52.498651 kcal Electronic energy + Delta-G solvation = -27925.678690 eV Core-core repulsion = 23970.257944 eV Total energy + Delta-G solvation = -3955.420746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.14911 -40.64749 -37.27030 -35.90139 -35.67658 -35.39093 -33.59993 -32.59837 -30.71205 -29.62660 -29.13202 -27.51107 -26.29172 -23.53031 -23.19073 -21.77041 -21.08450 -20.81856 -20.46155 -19.29897 -18.28555 -17.52860 -17.17017 -16.87033 -15.94481 -15.52930 -15.32666 -15.05915 -14.74058 -14.41088 -14.30308 -13.74395 -13.57345 -13.42462 -13.27981 -13.11490 -12.67051 -12.55797 -12.23502 -12.11413 -11.95353 -11.93515 -11.86011 -11.66305 -11.54259 -11.34428 -11.22385 -11.05220 -10.67703 -10.09069 -10.07780 -10.05757 -10.00784 -9.04479 -8.84243 -8.54781 -8.48091 -7.75303 -6.55328 -4.29950 0.26120 1.49703 2.53314 2.62108 2.92808 3.08013 3.19101 3.41970 3.47854 3.49999 3.68532 3.75649 4.09494 4.45373 4.47472 4.51632 4.74487 4.87663 5.00834 5.17891 5.21275 5.24977 5.30306 5.41842 5.49141 5.59098 5.63307 5.81461 5.89257 5.90317 5.97531 6.01981 6.14580 6.41563 6.66084 6.71474 6.87151 7.16981 7.20345 7.62407 7.70974 7.94015 8.30783 8.36467 8.63730 9.38166 10.82804 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008767 B = 0.005536 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.866648 B = 5056.521352 C = 7173.589314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.017 4.017 3 C -0.154 4.154 4 C 0.263 3.737 5 N -0.491 5.491 6 C 0.151 3.849 7 C -0.610 4.610 8 S 2.725 3.275 9 O -0.965 6.965 10 O -0.914 6.914 11 N -1.013 6.013 12 C 0.273 3.727 13 C -0.303 4.303 14 C 0.068 3.932 15 N -0.308 5.308 16 C 0.247 3.753 17 C -0.607 4.607 18 H 0.067 0.933 19 C 0.028 3.972 20 N -0.905 5.905 21 Si 1.069 2.931 22 H -0.288 1.288 23 H -0.276 1.276 24 H -0.283 1.283 25 N -0.295 5.295 26 N -0.521 5.521 27 H 0.421 0.579 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.196 0.804 36 H 0.430 0.570 37 H 0.141 0.859 38 H 0.171 0.829 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 18.947 0.035 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 C -0.212 4.212 4 C -0.003 4.003 5 N -0.210 5.210 6 C -0.005 4.005 7 C -0.807 4.807 8 S 2.811 3.189 9 O -0.955 6.955 10 O -0.903 6.903 11 N -0.767 5.767 12 C 0.017 3.983 13 C -0.336 4.336 14 C -0.083 4.083 15 N -0.088 5.088 16 C 0.129 3.871 17 C -0.645 4.645 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.541 5.541 21 Si 0.895 3.105 22 H -0.214 1.214 23 H -0.201 1.201 24 H -0.208 1.208 25 N -0.126 5.126 26 N -0.124 5.124 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.213 0.787 36 H 0.267 0.733 37 H 0.159 0.841 38 H 0.188 0.812 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.338 17.022 -2.565 17.266 hybrid contribution -1.704 2.221 2.568 3.799 sum -3.043 19.243 0.003 19.482 Atomic orbital electron populations 1.21861 0.92866 1.03416 1.02276 1.19773 0.96571 0.94988 0.92408 1.21939 1.01919 0.94576 1.02784 1.23882 0.98648 0.90159 0.87660 1.70501 1.17767 1.11511 1.21203 1.22762 0.92458 0.97417 0.87832 1.33375 1.28166 0.97821 1.21302 1.01222 0.72459 0.73139 0.72077 1.93578 1.82775 1.33502 1.85637 1.93678 1.57318 1.57717 1.81618 1.52577 1.47763 1.14380 1.61987 1.18661 0.94919 0.85151 0.99520 1.20829 1.02495 0.96184 1.14139 1.22441 0.94774 0.95696 0.95395 1.48835 1.16949 1.09607 1.33445 1.19870 0.98134 0.72768 0.96336 1.22108 1.56015 0.97034 0.89385 0.91439 1.25845 0.92958 0.91598 1.07338 1.70838 1.45838 1.25580 1.11831 0.83536 0.77006 0.76373 0.73539 1.21445 1.20099 1.20834 1.77436 1.17855 0.92810 1.24483 1.42710 1.49672 1.11459 1.08573 0.73963 0.91151 0.91302 0.92643 0.87292 0.91781 0.90724 0.92651 0.78686 0.73325 0.84100 0.81162 0.93539 0.94335 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 2 C -0.02 -0.17 3.39 -91.77 -0.31 -0.49 16 3 C -0.15 -1.12 8.94 37.16 0.33 -0.79 16 4 C 0.26 3.84 6.87 -155.41 -1.07 2.77 16 5 N -0.49 -9.30 11.25 -10.81 -0.12 -9.42 16 6 C 0.15 2.97 11.15 -17.81 -0.20 2.77 16 7 C -0.61 -10.12 7.21 -16.56 -0.12 -10.24 16 8 S 2.73 43.28 5.66 -107.50 -0.61 42.67 16 9 O -0.96 -14.92 18.02 -57.17 -1.03 -15.95 16 10 O -0.91 -18.00 17.08 -57.17 -0.98 -18.97 16 11 N -1.01 -14.46 5.91 31.39 0.19 -14.28 16 12 C 0.27 4.91 7.72 -154.55 -1.19 3.72 16 13 C -0.30 -4.82 10.83 -39.82 -0.43 -5.25 16 14 C 0.07 1.18 11.44 -17.24 -0.20 0.98 16 15 N -0.31 -6.68 3.67 -62.56 -0.23 -6.91 16 16 C 0.25 5.96 5.57 -5.19 -0.03 5.93 16 17 C -0.61 -16.55 9.24 -34.44 -0.32 -16.86 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.03 0.76 5.46 -17.82 -0.10 0.67 16 20 N -0.91 -26.11 13.65 55.43 0.76 -25.35 16 21 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 N -0.30 -6.41 10.92 31.41 0.34 -6.07 16 26 N -0.52 -7.05 5.91 -9.45 -0.06 -7.11 16 27 H 0.42 4.24 8.16 -40.82 -0.33 3.91 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.35 7.42 -51.93 -0.39 -0.04 16 35 H 0.20 4.21 8.00 -52.49 -0.42 3.79 16 36 H 0.43 4.34 8.95 -34.47 -0.31 4.03 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16 40 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.27 7.48 7.22 -40.82 -0.29 7.18 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -36.15 368.73 -9.71 -45.86 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.16 Total: 7.52 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.29 Total: -17.80 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: 0.88 Total: -69.12 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -2.01 Total: -34.93 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Atomic # 16 Polarization: 43.28 SS G_CDS: -0.61 Total: 42.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.15 -9.71 -45.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610479035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.361 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds