Wall clock time and date at job start Tue Mar 31 2020 22:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38303 * 119.96378 * 2 1 4 4 C 1.50702 * 119.92511 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47053 * 180.27628 * 4 3 2 6 6 C 1.38269 * 120.15002 * 180.28189 * 3 2 1 7 7 C 1.38122 * 120.07283 * 359.76310 * 6 3 2 8 8 N 1.48021 * 120.03763 * 180.02562 * 7 6 3 9 9 O 1.21809 * 119.99928 * 5.01206 * 8 7 6 10 10 O 1.21804 * 120.00271 * 185.01036 * 8 7 6 11 11 C 1.38893 * 119.92844 * 359.97438 * 7 6 3 12 12 N 1.39672 * 120.07771 * 180.02562 * 11 7 6 13 13 C 1.46904 * 110.99817 * 264.13619 * 12 11 7 14 14 C 1.52995 * 109.47331 * 184.49430 * 13 12 11 15 15 C 1.53000 * 109.47426 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47346 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00006 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00421 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99731 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00556 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47122 * 59.99983 * 20 18 16 22 22 H 1.48500 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47088 * 300.00232 * 20 18 16 24 24 C 1.38085 * 119.96109 * 179.76980 * 2 1 3 25 25 N 1.48022 * 120.04056 * 359.97279 * 24 2 1 26 26 O 1.21798 * 119.99959 * 269.72809 * 25 24 2 27 27 O 1.21801 * 119.99905 * 89.72484 * 25 24 2 28 28 H 1.08995 * 109.47292 * 270.23159 * 1 2 3 29 29 H 1.09000 * 109.47197 * 30.23417 * 1 2 3 30 30 H 1.09005 * 109.47234 * 150.23323 * 1 2 3 31 31 H 1.09003 * 109.46769 * 300.27243 * 4 3 2 32 32 H 1.08991 * 109.47027 * 60.27503 * 4 3 2 33 33 H 0.96701 * 113.99779 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.96323 * 179.75111 * 6 3 2 35 35 H 1.00895 * 111.00522 * 140.18292 * 12 11 7 36 36 H 1.08999 * 109.46719 * 304.49514 * 13 12 11 37 37 H 1.09003 * 109.46873 * 64.49221 * 13 12 11 38 38 H 1.09009 * 109.46814 * 300.00031 * 14 13 12 39 39 H 1.09000 * 109.47073 * 59.99333 * 14 13 12 40 40 H 1.08999 * 109.46645 * 300.00097 * 15 14 13 41 41 H 1.08995 * 109.47142 * 59.99757 * 15 14 13 42 42 H 0.97003 * 120.00465 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 1.4417 2.5018 0.0006 5 8 2.3682 3.5898 -0.0060 6 6 3.5804 1.2027 -0.0059 7 6 4.2764 0.0096 -0.0068 8 7 5.7566 0.0154 -0.0126 9 8 6.3619 1.0687 0.0757 10 8 6.3694 -1.0332 -0.1055 11 6 3.5859 -1.1955 -0.0013 12 7 4.2866 -2.4037 -0.0018 13 6 4.4237 -2.9323 -1.3655 14 6 5.0953 -4.3060 -1.3150 15 6 5.2386 -4.8563 -2.7354 16 6 5.9007 -6.2091 -2.6857 17 1 6.1907 -6.6338 -1.7359 18 6 6.1363 -6.9047 -3.8525 19 7 5.7828 -6.3878 -5.0090 20 14 6.9576 -8.5813 -3.7909 21 1 6.1280 -9.5095 -2.9813 22 1 7.0955 -9.1159 -5.1695 23 1 8.3017 -8.4516 -3.1729 24 6 2.1966 -1.1963 0.0048 25 7 1.4565 -2.4782 0.0106 26 8 1.1568 -3.0036 1.0677 27 8 1.1472 -3.0076 -1.0419 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5102 31 1 0.8109 2.5564 -0.8867 32 1 0.8190 2.5603 0.8932 33 1 1.9506 4.4620 -0.0064 34 1 4.1167 2.1400 -0.0099 35 1 3.8448 -3.0782 0.6047 36 1 3.4372 -3.0266 -1.8194 37 1 5.0334 -2.2514 -1.9595 38 1 6.0818 -4.2117 -0.8610 39 1 4.4856 -4.9869 -0.7209 40 1 4.2523 -4.9505 -3.1897 41 1 5.8485 -4.1753 -3.3290 42 1 5.9481 -6.8773 -5.8300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728910955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:57 Heat of formation + Delta-G solvation = -21.563005 kcal Electronic energy + Delta-G solvation = -30060.070130 eV Core-core repulsion = 25626.392207 eV Total energy + Delta-G solvation = -4433.677922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.90082 -42.13307 -40.53724 -38.13094 -36.87098 -36.83016 -36.28233 -34.35579 -33.68279 -32.26886 -30.64092 -29.50116 -27.19718 -27.13284 -25.91074 -24.96085 -22.91047 -22.68406 -21.52052 -20.44431 -19.77062 -19.21572 -19.10999 -18.52486 -18.13294 -17.55206 -17.42260 -16.87159 -16.39775 -16.07876 -16.03614 -15.40598 -15.15129 -14.66309 -14.42136 -14.23162 -13.82169 -13.68301 -12.97320 -12.93374 -12.41719 -12.33387 -12.04226 -11.96889 -11.77990 -11.54848 -11.45605 -11.43370 -11.16770 -11.10426 -10.99779 -10.83055 -10.72719 -10.56269 -10.35145 -9.93586 -9.74589 -9.41764 -9.09147 -9.00908 -8.31223 -5.96448 -3.98730 -0.64888 -0.18048 0.07164 0.69618 0.94761 1.31416 2.26871 3.10567 3.17065 3.38158 3.41705 3.44944 3.47738 3.71911 3.78310 4.14686 4.23273 4.40657 4.46273 4.50392 4.51231 4.66071 4.72728 4.80774 5.05520 5.17950 5.34262 5.37778 5.40547 5.42706 5.85100 6.00294 6.17579 6.34478 6.51272 6.69401 6.82597 6.87146 7.07119 7.15829 7.67135 7.68258 7.80416 8.02102 8.43992 9.07156 9.65129 11.15070 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003091 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.486125 B = 9055.245296 C =10271.959323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.026 3.974 3 C -0.104 4.104 4 C 0.126 3.874 5 O -0.567 6.567 6 C 0.014 3.986 7 C -0.041 4.041 8 N 0.028 4.972 9 O -0.184 6.184 10 O -0.081 6.081 11 C 0.230 3.770 12 N -0.639 5.639 13 C 0.063 3.937 14 C -0.106 4.106 15 C 0.026 3.974 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.081 4.081 25 N 0.016 4.984 26 O -0.127 6.127 27 O -0.110 6.110 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.393 0.607 34 H 0.179 0.821 35 H 0.362 0.638 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 22.504 12.234 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 C -0.106 4.106 4 C 0.048 3.952 5 O -0.374 6.374 6 C -0.005 4.005 7 C -0.127 4.127 8 N 0.553 4.447 9 O -0.388 6.388 10 O -0.313 6.313 11 C 0.128 3.872 12 N -0.268 5.268 13 C -0.060 4.060 14 C -0.144 4.144 15 C -0.012 4.012 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.165 4.165 25 N 0.548 4.452 26 O -0.349 6.349 27 O -0.336 6.336 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.243 0.757 34 H 0.196 0.804 35 H 0.186 0.814 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.799 23.005 12.043 29.406 hybrid contribution -0.625 -1.168 -0.124 1.331 sum -14.424 21.837 11.919 28.757 Atomic orbital electron populations 1.21218 0.88138 1.05595 1.04905 1.19501 0.97863 0.89368 0.90850 1.19316 0.92562 0.93939 1.04768 1.20794 0.89854 0.82952 1.01601 1.86418 1.35950 1.17278 1.97778 1.21104 0.93866 0.97939 0.87591 1.20799 0.82194 0.93702 1.15996 1.43064 1.01861 1.00984 0.98837 1.94544 1.68084 1.20867 1.55308 1.94718 1.67315 1.20339 1.48964 1.18136 0.86806 0.93360 0.88879 1.58168 1.50794 1.03136 1.14737 1.22557 1.00877 0.99490 0.83080 1.21705 0.99951 0.90565 1.02137 1.19034 0.97233 0.95782 0.89133 1.21151 1.39172 1.02622 0.92801 0.92582 1.25012 0.95800 0.98087 0.95508 1.69955 1.47609 1.38376 0.97585 0.86630 0.80067 0.84208 0.76942 1.20229 1.21323 1.20162 1.21236 0.91924 0.85001 1.18377 1.43225 0.99754 1.01301 1.00936 1.94606 1.56035 1.64104 1.20177 1.94682 1.54927 1.63388 1.20587 0.88072 0.88561 0.90053 0.90778 0.90811 0.75737 0.80361 0.81432 0.93487 0.90091 0.91267 0.93169 0.96502 0.96367 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.35 36.00 0.34 -0.44 16 2 C 0.03 0.22 5.88 -104.66 -0.62 -0.39 16 3 C -0.10 -0.79 5.88 -104.59 -0.62 -1.40 16 4 C 0.13 0.47 6.16 36.01 0.22 0.69 16 5 O -0.57 -2.48 12.13 -35.23 -0.43 -2.91 16 6 C 0.01 0.14 8.88 -39.61 -0.35 -0.21 16 7 C -0.04 -0.55 6.86 -79.74 -0.55 -1.09 16 8 N 0.03 0.45 4.45 34.06 0.15 0.60 16 9 O -0.18 -2.87 18.46 -29.46 -0.54 -3.41 16 10 O -0.08 -1.46 16.42 -29.46 -0.48 -1.94 16 11 C 0.23 3.15 5.25 -83.79 -0.44 2.71 16 12 N -0.64 -9.98 4.45 -58.36 -0.26 -10.24 16 13 C 0.06 1.14 5.23 -3.82 -0.02 1.12 16 14 C -0.11 -2.23 5.37 -26.73 -0.14 -2.38 16 15 C 0.03 0.68 4.97 -27.89 -0.14 0.54 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 C -0.08 -0.97 6.05 -79.74 -0.48 -1.45 16 25 N 0.02 0.21 2.60 34.06 0.09 0.30 16 26 O -0.13 -1.74 19.25 -29.46 -0.57 -2.31 16 27 O -0.11 -1.68 17.86 -29.46 -0.53 -2.20 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.25 6.63 -51.93 -0.34 -0.09 16 30 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 31 H 0.07 0.15 7.47 -51.93 -0.39 -0.24 16 32 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.39 -0.18 9.12 45.56 0.42 0.24 16 34 H 0.18 1.68 6.56 -52.49 -0.34 1.33 16 35 H 0.36 5.43 8.11 -39.29 -0.32 5.11 16 36 H 0.05 0.86 6.79 -51.93 -0.35 0.50 16 37 H 0.08 1.52 7.78 -51.93 -0.40 1.12 16 38 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -34.70 368.90 -8.69 -43.39 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.19 Total: -1.26 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.21 Total: -16.04 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.72 Total: -35.99 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -2.55 Total: -12.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.70 -8.69 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728910955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.827 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds