Wall clock time and date at job start Tue Mar 31 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99444 * 2 1 4 4 H 1.48496 * 109.47239 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47431 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47272 * 120.00100 * 3 2 1 7 7 C 1.38808 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00026 * 163.07655 * 7 2 1 9 9 N 1.36935 * 119.99968 * 343.08437 * 7 2 1 10 10 C 1.46930 * 120.62898 * 331.84066 * 9 7 2 11 11 C 1.53198 * 108.77433 * 233.58863 * 10 9 7 12 12 C 1.53043 * 109.31149 * 305.36428 * 11 10 9 13 13 N 1.46495 * 109.45669 * 181.38657 * 12 11 10 14 14 C 1.34781 * 120.00170 * 154.97430 * 13 12 11 15 15 S 1.71206 * 119.99450 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00401 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99988 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.46800 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46842 * 179.97438 * 18 17 16 20 20 C 1.33388 * 125.20113 * 90.00597 * 19 18 17 21 21 C 1.38418 * 114.92092 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92392 * 359.97438 * 21 20 19 23 23 S 1.75883 * 125.20631 * 269.69643 * 19 18 17 24 24 C 1.53036 * 109.52595 * 61.37372 * 12 11 10 25 25 C 1.46931 * 120.63394 * 151.82016 * 9 7 2 26 26 H 0.96995 * 120.00658 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58859 * 113.80503 * 10 9 7 28 28 H 1.09001 * 109.70589 * 353.44615 * 10 9 7 29 29 H 1.09001 * 109.49793 * 185.41576 * 11 10 9 30 30 H 1.09000 * 109.52065 * 65.33290 * 11 10 9 31 31 H 1.08999 * 109.46129 * 301.36141 * 12 11 10 32 32 H 0.97004 * 120.00522 * 334.97113 * 13 12 11 33 33 H 0.96995 * 119.99864 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.46855 * 60.00014 * 17 16 14 35 35 H 1.08997 * 109.47495 * 300.00166 * 17 16 14 36 36 H 1.09007 * 109.47225 * 60.00675 * 18 17 16 37 37 H 1.08997 * 109.47820 * 299.99873 * 18 17 16 38 38 H 1.08007 * 122.53707 * 359.94945 * 20 19 18 39 39 H 1.08007 * 122.53582 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.20449 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.50040 * 58.57683 * 24 12 11 42 42 H 1.09000 * 109.49683 * 178.67241 * 24 12 11 43 43 H 1.08992 * 109.58538 * 246.19864 * 25 9 7 44 44 H 1.09000 * 109.58007 * 6.48211 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2223 -0.2717 9 7 1.3702 -2.3622 0.3461 10 6 0.2261 -2.3399 1.2677 11 6 0.4975 -3.3191 2.4143 12 6 0.8121 -4.7007 1.8361 13 7 1.0396 -5.6475 2.9307 14 6 0.8358 -6.9653 2.7352 15 16 0.3103 -7.5328 1.2078 16 7 1.0456 -7.8364 3.7420 17 6 0.8235 -9.2688 3.5296 18 6 1.1311 -10.0295 4.8208 19 6 0.9021 -11.5030 4.6025 20 6 1.8224 -12.3694 4.1766 21 6 1.3805 -13.6751 4.0511 22 6 0.1013 -13.8692 4.3756 23 16 -0.6176 -12.3446 4.8777 24 6 2.0677 -4.6170 0.9652 25 6 1.8140 -3.6529 -0.1980 26 1 -0.4851 0.8399 0.0004 27 1 -0.6769 -2.6406 0.7365 28 1 0.0966 -1.3346 1.6687 29 1 -0.3832 -3.3841 3.0533 30 1 1.3469 -2.9677 3.0000 31 1 -0.0279 -5.0409 1.2305 32 1 1.3370 -5.3259 3.7962 33 1 1.3430 -7.5148 4.6074 34 1 1.4780 -9.6238 2.7335 35 1 -0.2158 -9.4375 3.2477 36 1 0.4762 -9.6744 5.6166 37 1 2.1703 -9.8610 5.1032 38 1 2.8357 -12.0744 3.9466 39 1 2.0230 -14.4763 3.7165 40 1 -0.4131 -14.8182 4.3394 41 1 2.9024 -4.2530 1.5642 42 1 2.3048 -5.6058 0.5727 43 1 1.0405 -4.0605 -0.8487 44 1 2.7335 -3.5129 -0.7665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730436624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:04 Heat of formation + Delta-G solvation = 65.988541 kcal Electronic energy + Delta-G solvation = -23826.913397 eV Core-core repulsion = 20418.370831 eV Total energy + Delta-G solvation = -3408.542566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.40439 -38.44062 -37.43677 -35.36734 -33.15047 -31.91296 -30.23979 -29.47579 -28.06651 -25.33233 -24.42530 -23.66606 -22.77164 -22.15733 -21.80453 -19.71154 -19.51539 -18.29232 -17.43107 -17.15450 -16.54588 -15.95562 -15.52710 -15.17652 -15.01546 -14.67798 -14.13869 -13.77393 -13.55097 -13.53235 -13.24979 -13.02678 -12.95169 -12.71100 -12.42127 -12.32446 -12.21599 -11.56542 -11.43423 -11.12744 -11.08537 -10.95468 -10.82801 -10.72650 -10.45597 -10.27059 -10.01532 -9.79525 -9.59788 -9.07351 -8.98243 -8.83162 -8.47776 -7.65496 -7.18321 -6.68361 -5.80006 -3.22106 0.58231 1.23638 1.53284 1.61859 2.08041 2.35525 2.67605 3.37612 3.43572 3.44391 3.54799 4.34553 4.44631 4.49051 4.53435 4.71450 4.95500 5.18315 5.21966 5.25261 5.33996 5.43644 5.45046 5.54200 5.59211 5.73379 5.76067 5.89294 5.94014 6.03095 6.08842 6.23297 6.27866 6.42808 6.51179 6.60807 6.71025 6.82170 6.97031 7.04146 7.27768 7.37899 7.60164 7.78864 8.44098 9.20200 9.83411 10.40553 11.28981 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039099 B = 0.001833 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.956745 B =15271.711417 C =15340.422089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.148 4.148 12 C 0.148 3.852 13 N -0.673 5.673 14 C 0.562 3.438 15 S -0.645 6.645 16 N -0.697 5.697 17 C 0.133 3.867 18 C -0.061 4.061 19 C -0.174 4.174 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.213 4.213 23 S 0.105 5.895 24 C -0.136 4.136 25 C 0.150 3.850 26 H 0.255 0.745 27 H 0.024 0.976 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.026 0.974 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -24.248 15.572 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.050 3.950 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.300 5.300 14 C 0.201 3.799 15 S -0.520 6.520 16 N -0.329 5.329 17 C 0.009 3.991 18 C -0.101 4.101 19 C -0.292 4.292 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.349 4.349 23 S 0.369 5.631 24 C -0.177 4.177 25 C 0.023 3.977 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.227 0.773 33 H 0.230 0.770 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.172 -24.065 14.911 28.310 hybrid contribution 2.374 0.885 1.190 2.799 sum 2.545 -23.179 16.101 28.337 Atomic orbital electron populations 1.70008 1.05213 1.25660 1.53837 1.25056 0.95295 0.98419 1.00883 0.86370 0.78902 0.83383 0.78106 1.20836 1.21642 1.21150 1.19144 0.92575 0.84770 1.41744 0.91676 1.44100 1.35721 1.01776 1.49916 1.20721 0.89168 0.97622 0.87511 1.22612 1.00409 0.94565 1.01209 1.21639 1.00798 0.86739 0.86254 1.45675 1.63892 1.03907 1.16479 1.22265 0.81734 0.83317 0.92555 1.93500 1.66154 1.82567 1.09784 1.44895 1.67954 1.07661 1.12360 1.21637 1.04242 0.76224 0.97031 1.20309 1.03426 0.88562 0.97815 1.24115 0.97054 0.98802 1.09259 1.20173 1.00873 0.92584 1.02548 1.20181 0.95564 0.97520 1.03221 1.25661 0.98828 1.01525 1.08845 1.84404 1.12997 1.00095 1.65622 1.22343 0.95966 1.00633 0.98712 1.20855 0.98176 0.86152 0.92538 0.93526 0.95769 0.88952 0.92756 0.92354 0.87110 0.77267 0.77031 0.89238 0.89445 0.90088 0.89272 0.84146 0.84195 0.81861 0.92915 0.91402 0.95567 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.24 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 10 C 0.18 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.15 -2.59 5.55 -26.61 -0.15 -2.74 16 12 C 0.15 2.46 2.18 -67.89 -0.15 2.31 16 13 N -0.67 -8.53 5.08 -55.48 -0.28 -8.82 16 14 C 0.56 7.42 7.95 -86.91 -0.69 6.73 16 15 S -0.64 -11.69 26.59 -107.50 -2.86 -14.55 16 16 N -0.70 -6.18 5.56 -62.03 -0.34 -6.52 16 17 C 0.13 1.15 5.11 -4.04 -0.02 1.13 16 18 C -0.06 -0.36 5.82 -27.88 -0.16 -0.52 16 19 C -0.17 -1.26 5.76 -36.00 -0.21 -1.47 16 20 C -0.13 -0.93 10.05 -41.21 -0.41 -1.35 16 21 C -0.13 -0.91 10.18 -41.21 -0.42 -1.33 16 22 C -0.21 -1.43 11.23 29.04 0.33 -1.10 16 23 S 0.11 0.77 23.33 -107.50 -2.51 -1.74 16 24 C -0.14 -2.43 5.60 -26.61 -0.15 -2.58 16 25 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.14 6.81 -51.93 -0.35 1.79 16 32 H 0.39 3.76 8.62 -40.82 -0.35 3.41 16 33 H 0.39 2.20 8.49 -40.82 -0.35 1.86 16 34 H 0.09 0.92 7.99 -51.93 -0.41 0.50 16 35 H 0.09 0.92 7.99 -51.93 -0.42 0.50 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.23 7.49 -51.93 -0.39 0.84 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -32.76 380.15 -14.27 -47.03 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.77 Total: 3.53 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.31 Total: -0.69 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.52 Total: -55.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: -10.92 SS G_CDS: -5.37 Total: -16.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.76 -14.27 -47.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730436624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.015 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds