Wall clock time and date at job start Tue Mar 31 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99444 * 2 1 4 4 H 1.48496 * 109.47239 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47431 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47272 * 120.00100 * 3 2 1 7 7 C 1.38808 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00026 * 163.07655 * 7 2 1 9 9 N 1.36935 * 119.99968 * 343.08437 * 7 2 1 10 10 C 1.46930 * 120.62898 * 331.84066 * 9 7 2 11 11 C 1.53198 * 108.77433 * 233.58863 * 10 9 7 12 12 C 1.53043 * 109.31149 * 305.36428 * 11 10 9 13 13 N 1.46495 * 109.45669 * 181.38657 * 12 11 10 14 14 C 1.34781 * 120.00170 * 154.97430 * 13 12 11 15 15 S 1.71206 * 119.99450 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00401 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99988 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.46800 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46842 * 179.97438 * 18 17 16 20 20 C 1.33388 * 125.20113 * 90.00597 * 19 18 17 21 21 C 1.38418 * 114.92092 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92392 * 359.97438 * 21 20 19 23 23 S 1.75883 * 125.20631 * 269.69643 * 19 18 17 24 24 C 1.53036 * 109.52595 * 61.37372 * 12 11 10 25 25 C 1.46931 * 120.63394 * 151.82016 * 9 7 2 26 26 H 0.96995 * 120.00658 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58859 * 113.80503 * 10 9 7 28 28 H 1.09001 * 109.70589 * 353.44615 * 10 9 7 29 29 H 1.09001 * 109.49793 * 185.41576 * 11 10 9 30 30 H 1.09000 * 109.52065 * 65.33290 * 11 10 9 31 31 H 1.08999 * 109.46129 * 301.36141 * 12 11 10 32 32 H 0.97004 * 120.00522 * 334.97113 * 13 12 11 33 33 H 0.96995 * 119.99864 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.46855 * 60.00014 * 17 16 14 35 35 H 1.08997 * 109.47495 * 300.00166 * 17 16 14 36 36 H 1.09007 * 109.47225 * 60.00675 * 18 17 16 37 37 H 1.08997 * 109.47820 * 299.99873 * 18 17 16 38 38 H 1.08007 * 122.53707 * 359.94945 * 20 19 18 39 39 H 1.08007 * 122.53582 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.20449 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.50040 * 58.57683 * 24 12 11 42 42 H 1.09000 * 109.49683 * 178.67241 * 24 12 11 43 43 H 1.08992 * 109.58538 * 246.19864 * 25 9 7 44 44 H 1.09000 * 109.58007 * 6.48211 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2223 -0.2717 9 7 1.3702 -2.3622 0.3461 10 6 0.2261 -2.3399 1.2677 11 6 0.4975 -3.3191 2.4143 12 6 0.8121 -4.7007 1.8361 13 7 1.0396 -5.6475 2.9307 14 6 0.8358 -6.9653 2.7352 15 16 0.3103 -7.5328 1.2078 16 7 1.0456 -7.8364 3.7420 17 6 0.8235 -9.2688 3.5296 18 6 1.1311 -10.0295 4.8208 19 6 0.9021 -11.5030 4.6025 20 6 1.8224 -12.3694 4.1766 21 6 1.3805 -13.6751 4.0511 22 6 0.1013 -13.8692 4.3756 23 16 -0.6176 -12.3446 4.8777 24 6 2.0677 -4.6170 0.9652 25 6 1.8140 -3.6529 -0.1980 26 1 -0.4851 0.8399 0.0004 27 1 -0.6769 -2.6406 0.7365 28 1 0.0966 -1.3346 1.6687 29 1 -0.3832 -3.3841 3.0533 30 1 1.3469 -2.9677 3.0000 31 1 -0.0279 -5.0409 1.2305 32 1 1.3370 -5.3259 3.7962 33 1 1.3430 -7.5148 4.6074 34 1 1.4780 -9.6238 2.7335 35 1 -0.2158 -9.4375 3.2477 36 1 0.4762 -9.6744 5.6166 37 1 2.1703 -9.8610 5.1032 38 1 2.8357 -12.0744 3.9466 39 1 2.0230 -14.4763 3.7165 40 1 -0.4131 -14.8182 4.3394 41 1 2.9024 -4.2530 1.5642 42 1 2.3048 -5.6058 0.5727 43 1 1.0405 -4.0605 -0.8487 44 1 2.7335 -3.5129 -0.7665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730436624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:03 Heat of formation + Delta-G solvation = 46.914592 kcal Electronic energy + Delta-G solvation = -23827.740505 eV Core-core repulsion = 20418.370831 eV Total energy + Delta-G solvation = -3409.369674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58461 -39.23328 -38.54739 -36.66684 -34.47098 -33.22501 -31.81405 -31.12877 -28.81830 -26.94592 -25.37666 -24.78295 -23.75654 -23.72812 -23.06894 -21.13535 -20.17866 -19.46742 -18.68458 -18.26617 -17.74631 -16.84747 -16.56309 -16.32659 -16.24593 -15.94834 -15.57900 -15.35388 -15.03496 -14.74212 -14.14895 -14.10901 -14.06782 -13.68567 -13.34576 -13.18515 -13.05440 -12.98950 -12.93202 -12.58758 -12.54495 -12.28109 -12.19455 -12.08209 -12.00441 -11.80066 -11.61885 -11.39402 -11.32394 -10.53951 -10.05149 -9.59428 -9.37730 -9.01717 -8.71800 -8.56976 -7.86461 -5.32056 0.05957 0.39976 0.72419 0.93497 1.10835 1.49075 1.50133 1.52177 1.58377 1.87575 2.53074 2.59250 3.29306 3.67686 3.79397 3.85537 3.87264 3.99877 4.01620 4.27839 4.32909 4.44441 4.45559 4.64661 4.66525 4.67371 4.72764 4.81220 4.86239 4.88837 4.97024 5.09847 5.15111 5.17790 5.24132 5.30224 5.39940 5.45145 5.54187 5.60612 5.66084 5.73066 5.95624 6.40186 6.45310 7.15875 7.85390 8.38368 9.20426 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039099 B = 0.001833 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.956745 B =15271.711417 C =15340.422089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.180 3.820 11 C -0.129 4.129 12 C 0.165 3.835 13 N -0.657 5.657 14 C 0.587 3.413 15 S -0.741 6.741 16 N -0.664 5.664 17 C 0.137 3.863 18 C -0.050 4.050 19 C -0.184 4.184 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.217 4.217 23 S 0.080 5.920 24 C -0.118 4.118 25 C 0.147 3.853 26 H 0.251 0.749 27 H -0.005 1.005 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.419 0.581 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -24.981 18.337 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.169 4.169 12 C 0.060 3.940 13 N -0.285 5.285 14 C 0.222 3.778 15 S -0.618 6.618 16 N -0.295 5.295 17 C 0.013 3.987 18 C -0.089 4.089 19 C -0.302 4.302 20 C -0.169 4.169 21 C -0.175 4.175 22 C -0.352 4.352 23 S 0.344 5.656 24 C -0.159 4.159 25 C 0.021 3.979 26 H 0.060 0.940 27 H 0.013 0.987 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.255 0.745 33 H 0.259 0.741 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.198 0.802 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.025 0.975 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.058 -24.843 17.758 30.607 hybrid contribution 1.801 1.001 0.340 2.089 sum 3.859 -23.842 18.098 30.181 Atomic orbital electron populations 1.70175 1.06651 1.26007 1.55263 1.25815 0.96032 1.01513 1.01138 0.85331 0.77524 0.79150 0.78354 1.20419 1.22140 1.20078 1.19478 0.92866 0.85834 1.41183 0.91499 1.44351 1.35869 1.02185 1.50717 1.20534 0.87813 0.97625 0.88669 1.22299 1.02088 0.93339 0.99159 1.21108 0.99195 0.86934 0.86735 1.45090 1.63810 1.03061 1.16567 1.21583 0.80998 0.83623 0.91598 1.93782 1.70166 1.83584 1.14218 1.44767 1.65198 1.07338 1.12201 1.21618 1.02825 0.75814 0.98462 1.20266 1.05142 0.87233 0.96279 1.24290 0.96718 0.99480 1.09723 1.20452 1.01555 0.92797 1.02113 1.20472 0.95881 0.98054 1.03120 1.25940 0.98982 1.01821 1.08506 1.84468 1.13885 1.01150 1.66128 1.22093 0.96840 0.99352 0.97567 1.20912 0.97342 0.85745 0.93873 0.94022 0.98720 0.91707 0.90336 0.90896 0.89807 0.74493 0.74109 0.90634 0.91308 0.88593 0.87001 0.82867 0.82563 0.80236 0.91745 0.91363 0.97509 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 11.19 21.65 0.24 -54.62 16 2 C -0.05 -2.73 4.92 84.86 0.42 -2.32 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.20 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.26 -14.34 9.58 84.03 0.81 -13.53 16 8 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 9 N -0.61 -30.32 2.99 -699.09 -2.09 -32.41 16 10 C 0.18 8.42 5.30 86.36 0.46 8.87 16 11 C -0.13 -4.30 5.55 30.67 0.17 -4.13 16 12 C 0.16 5.24 2.18 45.02 0.10 5.33 16 13 N -0.66 -14.62 5.08 -329.45 -1.67 -16.29 16 14 C 0.59 14.20 7.95 179.05 1.42 15.62 16 15 S -0.74 -27.10 26.59 -56.49 -1.50 -28.60 16 16 N -0.66 -9.58 5.56 -350.17 -1.95 -11.53 16 17 C 0.14 2.09 5.11 86.38 0.44 2.53 16 18 C -0.05 -0.43 5.82 29.85 0.17 -0.26 16 19 C -0.18 -2.33 5.76 24.59 0.14 -2.19 16 20 C -0.14 -1.71 10.05 21.21 0.21 -1.50 16 21 C -0.15 -1.74 10.18 21.21 0.22 -1.52 16 22 C -0.22 -2.65 11.23 66.72 0.75 -1.90 16 23 S 0.08 1.10 23.33 -56.49 -1.32 -0.22 16 24 C -0.12 -4.09 5.60 30.67 0.17 -3.92 16 25 C 0.15 6.40 6.52 86.36 0.56 6.97 16 26 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 27 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 3.25 6.81 -2.39 -0.02 3.23 16 32 H 0.42 5.96 8.62 -92.71 -0.80 5.16 16 33 H 0.42 2.60 8.49 -92.71 -0.79 1.81 16 34 H 0.08 1.45 7.99 -2.39 -0.02 1.44 16 35 H 0.07 1.39 7.99 -2.39 -0.02 1.37 16 36 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.40 7.49 -2.39 -0.02 2.38 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 2.40 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -74.61 380.15 -0.79 -75.40 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.57 Total: 14.00 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.04 Total: 8.06 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -5.47 Total: -114.85 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -26.00 SS G_CDS: -2.82 Total: -28.82 kcal Total: -74.61 -0.79 -75.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730436624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.313 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds