Wall clock time and date at job start Tue Mar 31 2020 22:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.53394 * 2 1 4 4 C 1.53005 * 117.49654 * 16.57828 * 3 2 1 5 5 C 1.52998 * 117.49686 * 307.91647 * 3 2 1 6 6 N 1.47309 * 110.80171 * 237.11844 * 2 1 3 7 7 C 1.34525 * 106.61823 * 241.75848 * 6 2 1 8 8 O 1.21543 * 123.77085 * 179.85399 * 7 6 2 9 9 N 1.33791 * 112.45685 * 359.58762 * 7 6 2 10 10 C 1.46500 * 124.17509 * 180.23558 * 9 7 6 11 11 C 1.50700 * 109.47653 * 90.02050 * 10 9 7 12 12 O 1.20830 * 119.99416 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00309 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99993 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47039 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00355 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00058 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00138 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00210 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00101 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46941 * 89.99936 * 22 20 18 24 24 H 1.48500 * 109.47444 * 209.99829 * 22 20 18 25 25 H 1.48493 * 109.47023 * 330.00160 * 22 20 18 26 26 C 1.34766 * 111.64749 * 0.26475 * 9 7 6 27 27 O 1.21226 * 127.15862 * 180.02562 * 26 9 7 28 28 H 1.08996 * 109.47465 * 297.87241 * 1 2 3 29 29 H 1.09006 * 109.47440 * 57.87055 * 1 2 3 30 30 H 1.09001 * 109.46958 * 177.87213 * 1 2 3 31 31 H 1.08996 * 115.54832 * 162.24467 * 3 2 1 32 32 H 1.08992 * 117.49838 * 359.97438 * 4 3 2 33 33 H 1.08995 * 117.49506 * 145.02284 * 4 3 2 34 34 H 1.09002 * 117.49935 * 214.97719 * 5 3 2 35 35 H 1.08997 * 117.50461 * 359.97438 * 5 3 2 36 36 H 0.97005 * 126.68989 * 61.64325 * 6 2 1 37 37 H 1.08999 * 109.46956 * 210.02219 * 10 9 7 38 38 H 1.09004 * 109.47087 * 330.02121 * 10 9 7 39 39 H 1.08995 * 109.47485 * 300.00677 * 14 13 11 40 40 H 1.09006 * 109.46670 * 60.00746 * 14 13 11 41 41 H 0.97007 * 120.00230 * 0.02562 * 17 15 14 42 42 H 0.97005 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 1.0963 2.5507 0.3872 5 6 1.5334 2.3869 -1.0707 6 7 2.0531 -0.7476 -1.1565 7 6 2.7599 -1.7789 -0.6600 8 8 3.3288 -2.6023 -1.3498 9 7 2.7715 -1.7938 0.6777 10 6 3.4674 -2.7999 1.4836 11 6 4.8749 -2.3372 1.7593 12 8 5.2575 -1.2759 1.3265 13 8 5.7034 -3.1039 2.4856 14 6 7.0446 -2.5953 2.7109 15 6 7.8243 -3.5840 3.5387 16 8 7.3014 -4.6161 3.9026 17 7 9.1028 -3.3215 3.8747 18 6 9.8124 -4.2213 4.6274 19 1 9.3467 -5.1402 4.9515 20 6 11.1303 -3.9504 4.9743 21 7 11.6968 -2.8319 4.5805 22 14 12.0969 -5.1760 6.0005 23 1 12.7910 -6.1343 5.1032 24 1 13.0999 -4.4517 6.8220 25 1 11.1683 -5.9162 6.8920 26 6 2.0633 -0.7692 1.1924 27 8 1.8893 -0.5153 2.3649 28 1 -0.3634 0.4804 0.9084 29 1 -0.3634 0.5466 -0.8703 30 1 -0.3633 -1.0270 -0.0382 31 1 3.1086 1.5446 0.2999 32 1 0.0756 2.2653 0.6416 33 1 1.5000 3.3979 0.9414 34 1 2.2245 3.1266 -1.4749 35 1 0.8006 1.9938 -1.7753 36 1 1.9136 -0.5381 -2.0933 37 1 2.9393 -2.9387 2.4269 38 1 3.4954 -3.7446 0.9405 39 1 7.5439 -2.4503 1.7529 40 1 6.9881 -1.6433 3.2390 41 1 9.5211 -2.4959 3.5840 42 1 12.6168 -2.6427 4.8230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:06 Heat of formation + Delta-G solvation = -122.719017 kcal Electronic energy + Delta-G solvation = -29250.960159 eV Core-core repulsion = 24812.895783 eV Total energy + Delta-G solvation = -4438.064376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.01392 -40.35430 -39.07328 -38.45186 -38.08656 -36.34293 -36.07971 -34.77611 -34.00404 -31.39075 -30.67563 -29.87223 -27.99420 -26.04674 -24.63207 -23.56800 -23.03252 -22.34116 -20.63924 -20.28868 -19.59933 -18.33820 -18.17205 -18.04874 -17.29025 -16.95829 -16.47769 -16.40739 -15.95218 -15.85587 -15.59928 -15.45136 -14.87991 -14.51214 -14.33787 -14.28373 -13.96211 -13.84331 -13.23445 -12.98754 -12.90691 -12.85840 -12.30249 -12.15538 -12.04758 -11.83047 -11.62016 -11.50621 -11.13125 -11.08490 -10.96097 -10.75271 -10.48060 -10.43498 -10.40030 -10.30395 -10.12090 -9.86379 -9.60433 -8.53141 -8.08308 -6.49705 -3.91786 1.25772 1.58401 2.14495 2.43021 2.63988 2.90781 3.13280 3.13872 3.24097 3.30424 3.64137 3.73249 3.88894 4.06766 4.10471 4.37047 4.47981 4.50909 4.52603 4.71086 4.85298 4.90247 4.95323 5.05350 5.10000 5.14997 5.16728 5.27160 5.28464 5.47071 5.50324 5.58168 5.62507 5.67743 6.03536 6.39468 6.50602 6.63013 6.98231 7.48199 7.67366 7.78221 7.94456 8.48228 9.07123 9.39089 9.88775 10.67521 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.002115 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.406443 B =13235.282743 C =13572.750938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 C -0.162 4.162 4 C -0.162 4.162 5 C -0.165 4.165 6 N -0.714 5.714 7 C 0.709 3.291 8 O -0.534 6.534 9 N -0.565 5.565 10 C 0.128 3.872 11 C 0.447 3.553 12 O -0.505 6.505 13 O -0.319 6.319 14 C 0.062 3.938 15 C 0.439 3.561 16 O -0.575 6.575 17 N -0.552 5.552 18 C -0.302 4.302 19 H 0.107 0.893 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.935 3.065 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 C 0.538 3.462 27 O -0.451 6.451 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.440 0.560 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.395 0.605 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.200 11.358 -12.345 29.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.066 3.934 3 C -0.181 4.181 4 C -0.200 4.200 5 C -0.202 4.202 6 N -0.378 5.378 7 C 0.410 3.590 8 O -0.407 6.407 9 N -0.312 5.312 10 C 0.005 3.995 11 C 0.288 3.712 12 O -0.393 6.393 13 O -0.233 6.233 14 C -0.016 4.016 15 C 0.223 3.777 16 O -0.459 6.459 17 N -0.189 5.189 18 C -0.431 4.431 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 C 0.324 3.676 27 O -0.319 6.319 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.285 0.715 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.228 0.772 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.933 10.652 -11.810 28.736 hybrid contribution 1.128 0.270 -0.156 1.171 sum -22.805 10.922 -11.967 27.974 Atomic orbital electron populations 1.22139 0.90126 1.04111 1.04645 1.20798 0.96571 0.91920 0.84132 1.22248 1.00555 0.87914 1.07377 1.23168 0.99756 0.99307 0.97755 1.23011 1.03476 1.01504 0.92186 1.45550 1.55326 1.27949 1.08995 1.15759 0.79430 0.82493 0.81328 1.91054 1.47664 1.41321 1.60650 1.45968 1.48477 1.28744 1.08045 1.20995 0.87635 0.91823 0.99005 1.23723 0.88660 0.83068 0.75767 1.90672 1.76794 1.23103 1.48774 1.86513 1.24036 1.48015 1.64699 1.22804 0.79367 0.97947 1.01445 1.19270 0.83543 0.88472 0.86381 1.90564 1.69465 1.27496 1.58376 1.41701 1.09263 1.21141 1.46826 1.19731 0.93883 1.01685 1.27804 0.87562 1.25324 0.96976 0.97374 0.98125 1.69619 1.14608 1.23821 1.45734 0.85785 0.79046 0.79628 0.79416 1.20243 1.20816 1.19254 1.20703 0.77087 0.79783 0.90006 1.90821 1.56630 1.67944 1.16464 0.89251 0.89969 0.90923 0.86443 0.87577 0.87912 0.87972 0.88278 0.71543 0.84047 0.83835 0.89390 0.89422 0.77151 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 7.67 37.16 0.28 -0.39 16 2 C 0.16 1.16 1.20 -132.09 -0.16 1.00 16 3 C -0.16 -1.14 5.40 -90.61 -0.49 -1.63 16 4 C -0.16 -0.82 9.73 -26.69 -0.26 -1.08 16 5 C -0.16 -0.72 9.88 -26.69 -0.26 -0.99 16 6 N -0.71 -5.53 5.91 -52.94 -0.31 -5.84 16 7 C 0.71 8.41 8.62 -88.02 -0.76 7.65 16 8 O -0.53 -8.14 17.48 5.33 0.09 -8.04 16 9 N -0.57 -6.66 2.09 -122.02 -0.26 -6.92 16 10 C 0.13 1.54 6.29 -5.19 -0.03 1.50 16 11 C 0.45 7.30 8.03 36.01 0.29 7.59 16 12 O -0.51 -9.23 16.18 -18.75 -0.30 -9.54 16 13 O -0.32 -6.01 9.75 -45.90 -0.45 -6.46 16 14 C 0.06 1.21 5.94 36.00 0.21 1.43 16 15 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 16 O -0.57 -16.11 16.08 -14.11 -0.23 -16.33 16 17 N -0.55 -14.15 5.29 -10.97 -0.06 -14.20 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C 0.54 5.94 6.98 -10.55 -0.07 5.87 16 27 O -0.45 -5.99 17.76 5.60 0.10 -5.89 16 28 H 0.09 0.38 6.86 -51.93 -0.36 0.03 16 29 H 0.08 0.20 6.86 -51.93 -0.36 -0.16 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 0.41 6.04 -51.93 -0.31 0.09 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.27 7.16 -51.93 -0.37 -0.10 16 36 H 0.44 2.28 8.96 -40.82 -0.37 1.92 16 37 H 0.14 1.36 8.00 -51.93 -0.42 0.94 16 38 H 0.14 1.47 7.86 -51.93 -0.41 1.06 16 39 H 0.09 1.59 8.13 -51.93 -0.42 1.17 16 40 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -36.73 371.19 -6.65 -43.38 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.96 Total: 8.38 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: -1.58 Total: 23.60 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.10 Total: -50.53 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.79 Total: -46.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.73 -6.65 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.340 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds