Wall clock time and date at job start Tue Mar 31 2020 22:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.53394 * 2 1 4 4 C 1.53005 * 117.49654 * 16.57828 * 3 2 1 5 5 C 1.52998 * 117.49686 * 307.91647 * 3 2 1 6 6 N 1.47309 * 110.80171 * 237.11844 * 2 1 3 7 7 C 1.34525 * 106.61823 * 241.75848 * 6 2 1 8 8 O 1.21543 * 123.77085 * 179.85399 * 7 6 2 9 9 N 1.33791 * 112.45685 * 359.58762 * 7 6 2 10 10 C 1.46500 * 124.17509 * 180.23558 * 9 7 6 11 11 C 1.50700 * 109.47653 * 90.02050 * 10 9 7 12 12 O 1.20830 * 119.99416 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00309 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99993 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47039 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00355 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00058 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00138 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00210 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00101 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46941 * 89.99936 * 22 20 18 24 24 H 1.48500 * 109.47444 * 209.99829 * 22 20 18 25 25 H 1.48493 * 109.47023 * 330.00160 * 22 20 18 26 26 C 1.34766 * 111.64749 * 0.26475 * 9 7 6 27 27 O 1.21226 * 127.15862 * 180.02562 * 26 9 7 28 28 H 1.08996 * 109.47465 * 297.87241 * 1 2 3 29 29 H 1.09006 * 109.47440 * 57.87055 * 1 2 3 30 30 H 1.09001 * 109.46958 * 177.87213 * 1 2 3 31 31 H 1.08996 * 115.54832 * 162.24467 * 3 2 1 32 32 H 1.08992 * 117.49838 * 359.97438 * 4 3 2 33 33 H 1.08995 * 117.49506 * 145.02284 * 4 3 2 34 34 H 1.09002 * 117.49935 * 214.97719 * 5 3 2 35 35 H 1.08997 * 117.50461 * 359.97438 * 5 3 2 36 36 H 0.97005 * 126.68989 * 61.64325 * 6 2 1 37 37 H 1.08999 * 109.46956 * 210.02219 * 10 9 7 38 38 H 1.09004 * 109.47087 * 330.02121 * 10 9 7 39 39 H 1.08995 * 109.47485 * 300.00677 * 14 13 11 40 40 H 1.09006 * 109.46670 * 60.00746 * 14 13 11 41 41 H 0.97007 * 120.00230 * 0.02562 * 17 15 14 42 42 H 0.97005 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 1.0963 2.5507 0.3872 5 6 1.5334 2.3869 -1.0707 6 7 2.0531 -0.7476 -1.1565 7 6 2.7599 -1.7789 -0.6600 8 8 3.3288 -2.6023 -1.3498 9 7 2.7715 -1.7938 0.6777 10 6 3.4674 -2.7999 1.4836 11 6 4.8749 -2.3372 1.7593 12 8 5.2575 -1.2759 1.3265 13 8 5.7034 -3.1039 2.4856 14 6 7.0446 -2.5953 2.7109 15 6 7.8243 -3.5840 3.5387 16 8 7.3014 -4.6161 3.9026 17 7 9.1028 -3.3215 3.8747 18 6 9.8124 -4.2213 4.6274 19 1 9.3467 -5.1402 4.9515 20 6 11.1303 -3.9504 4.9743 21 7 11.6968 -2.8319 4.5805 22 14 12.0969 -5.1760 6.0005 23 1 12.7910 -6.1343 5.1032 24 1 13.0999 -4.4517 6.8220 25 1 11.1683 -5.9162 6.8920 26 6 2.0633 -0.7692 1.1924 27 8 1.8893 -0.5153 2.3649 28 1 -0.3634 0.4804 0.9084 29 1 -0.3634 0.5466 -0.8703 30 1 -0.3633 -1.0270 -0.0382 31 1 3.1086 1.5446 0.2999 32 1 0.0756 2.2653 0.6416 33 1 1.5000 3.3979 0.9414 34 1 2.2245 3.1266 -1.4749 35 1 0.8006 1.9938 -1.7753 36 1 1.9136 -0.5381 -2.0933 37 1 2.9393 -2.9387 2.4269 38 1 3.4954 -3.7446 0.9405 39 1 7.5439 -2.4503 1.7529 40 1 6.9881 -1.6433 3.2390 41 1 9.5211 -2.4959 3.5840 42 1 12.6168 -2.6427 4.8230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:05 Heat of formation + Delta-G solvation = -149.350040 kcal Electronic energy + Delta-G solvation = -29252.114967 eV Core-core repulsion = 24812.895783 eV Total energy + Delta-G solvation = -4439.219184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.85165 -41.74745 -40.11830 -39.95399 -39.02309 -37.75002 -37.05388 -36.07354 -35.57520 -33.45816 -31.24933 -31.05282 -29.48490 -26.77947 -26.46274 -24.37548 -23.69934 -23.15929 -21.62180 -21.50647 -21.00339 -20.12358 -19.39892 -19.18526 -18.22470 -18.06399 -17.85985 -17.64514 -17.06551 -16.75167 -16.73018 -16.60601 -16.33872 -15.92144 -15.76619 -15.55097 -15.18360 -14.70133 -14.46622 -14.35211 -13.72958 -13.61597 -13.58161 -13.48918 -13.23556 -12.95682 -12.84192 -12.50368 -12.33521 -12.23269 -12.12716 -12.11158 -12.01025 -11.72467 -11.60743 -11.32169 -11.23009 -11.07090 -10.58502 -10.54972 -10.15341 -8.55017 -6.06042 0.39078 0.64428 0.83863 1.31218 1.34134 1.42624 1.55637 1.82520 1.85348 1.97420 2.27987 2.54175 2.92794 3.06261 3.10171 3.35835 3.44864 3.53888 3.72365 3.90755 3.91830 4.02659 4.06115 4.08832 4.11875 4.15755 4.28569 4.36707 4.64427 4.70492 4.88047 4.96212 5.02043 5.09050 5.23404 5.27673 5.34561 5.70309 5.79149 5.85182 6.14569 6.33248 6.46156 6.94497 6.99365 7.35326 7.88337 8.62067 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.002115 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.406443 B =13235.282743 C =13572.750938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 C -0.188 4.188 4 C -0.158 4.158 5 C -0.143 4.143 6 N -0.692 5.692 7 C 0.704 3.296 8 O -0.574 6.574 9 N -0.570 5.570 10 C 0.129 3.871 11 C 0.446 3.554 12 O -0.528 6.528 13 O -0.334 6.334 14 C 0.072 3.928 15 C 0.437 3.563 16 O -0.615 6.615 17 N -0.557 5.557 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 1.000 3.000 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.270 1.270 26 C 0.530 3.470 27 O -0.479 6.479 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.453 0.547 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.400 0.600 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.704 12.419 -13.231 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.076 3.924 3 C -0.208 4.208 4 C -0.195 4.195 5 C -0.180 4.180 6 N -0.357 5.357 7 C 0.405 3.595 8 O -0.450 6.450 9 N -0.317 5.317 10 C 0.006 3.994 11 C 0.289 3.711 12 O -0.417 6.417 13 O -0.248 6.248 14 C -0.005 4.005 15 C 0.223 3.777 16 O -0.502 6.502 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.823 3.177 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.194 1.194 26 C 0.318 3.682 27 O -0.348 6.348 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.301 0.699 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.234 0.766 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.464 11.781 -12.734 30.812 hybrid contribution 1.576 0.024 0.105 1.580 sum -23.888 11.805 -12.630 29.487 Atomic orbital electron populations 1.22218 0.87093 1.05010 1.06331 1.20907 0.98454 0.91216 0.81857 1.22136 0.99566 0.88305 1.10780 1.23302 0.99907 0.97881 0.98402 1.23153 1.03115 0.99693 0.92062 1.45509 1.53810 1.26408 1.09935 1.15940 0.79528 0.82910 0.81145 1.91025 1.49553 1.43046 1.61349 1.46121 1.48295 1.29030 1.08240 1.21226 0.85094 0.92485 1.00615 1.24579 0.89561 0.82480 0.74510 1.90656 1.77390 1.24071 1.49594 1.86517 1.23774 1.48914 1.65583 1.22556 0.79858 0.96667 1.01446 1.19995 0.83262 0.88623 0.85792 1.90527 1.70256 1.29474 1.59915 1.41743 1.09787 1.21067 1.46809 1.19743 0.95048 1.02028 1.29896 0.89614 1.26172 0.97193 0.99105 0.98581 1.69679 1.15197 1.24815 1.45885 0.84826 0.77557 0.77459 0.77885 1.19404 1.19369 1.19435 1.21416 0.76505 0.79560 0.90717 1.90797 1.57672 1.68515 1.17819 0.88731 0.86938 0.90630 0.89602 0.85800 0.88274 0.87851 0.85720 0.69911 0.81651 0.82082 0.87747 0.87600 0.76598 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.67 71.98 0.55 -0.30 16 2 C 0.17 2.18 1.20 2.99 0.00 2.18 16 3 C -0.19 -2.41 5.40 -10.79 -0.06 -2.47 16 4 C -0.16 -1.23 9.73 30.62 0.30 -0.93 16 5 C -0.14 -0.84 9.88 30.62 0.30 -0.54 16 6 N -0.69 -9.63 5.91 -439.81 -2.60 -12.23 16 7 C 0.70 16.32 8.62 179.44 1.55 17.86 16 8 O -0.57 -17.47 17.48 -3.85 -0.07 -17.53 16 9 N -0.57 -13.23 2.09 -777.22 -1.63 -14.85 16 10 C 0.13 3.04 6.29 85.63 0.54 3.58 16 11 C 0.45 14.64 8.03 71.24 0.57 15.22 16 12 O -0.53 -19.48 16.18 21.95 0.36 -19.12 16 13 O -0.33 -12.69 9.75 -45.04 -0.44 -13.13 16 14 C 0.07 2.84 5.94 71.24 0.42 3.26 16 15 C 0.44 21.87 7.86 87.66 0.69 22.56 16 16 O -0.62 -35.49 16.08 15.74 0.25 -35.24 16 17 N -0.56 -29.17 5.29 -307.00 -1.62 -30.80 16 18 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 19 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 21 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 22 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.53 11.40 6.98 87.94 0.61 12.02 16 27 O -0.48 -12.62 17.76 -2.86 -0.05 -12.68 16 28 H 0.09 0.52 6.86 -2.39 -0.02 0.50 16 29 H 0.11 0.00 6.86 -2.38 -0.02 -0.02 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 0.53 6.04 -2.39 -0.01 0.51 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.11 7.16 -2.39 -0.02 0.09 16 36 H 0.45 3.68 8.96 -92.70 -0.83 2.85 16 37 H 0.17 3.07 8.00 -2.39 -0.02 3.05 16 38 H 0.16 3.23 7.86 -2.38 -0.02 3.22 16 39 H 0.10 3.77 8.13 -2.39 -0.02 3.75 16 40 H 0.11 3.78 8.13 -2.38 -0.02 3.76 16 41 H 0.40 19.79 7.90 -92.70 -0.73 19.05 16 42 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -81.41 371.19 2.82 -78.59 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.45 Total: 27.52 kcal Atomic # 6 Polarization: 47.21 SS G_CDS: 6.76 Total: 53.97 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -5.57 Total: -106.88 kcal Atomic # 8 Polarization: -97.75 SS G_CDS: 0.05 Total: -97.70 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -81.41 2.82 -78.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.760 kcal (2) G-P(sol) polarization free energy of solvation -81.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds