Wall clock time and date at job start Tue Mar 31 2020 22:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.53665 * 2 1 4 4 C 1.53000 * 117.49920 * 54.30039 * 3 2 1 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 3 2 6 6 N 1.47308 * 110.59777 * 122.83209 * 2 1 3 7 7 C 1.34525 * 106.62205 * 118.68113 * 6 2 1 8 8 O 1.21543 * 123.77642 * 180.02562 * 7 6 2 9 9 N 1.33788 * 112.45791 * 359.97438 * 7 6 2 10 10 C 1.46500 * 124.18147 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46880 * 89.97839 * 10 9 7 12 12 O 1.20827 * 120.00278 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.45202 * 117.00378 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47144 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99855 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99843 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00300 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99804 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99880 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46841 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47261 * 120.00127 * 22 20 18 25 25 H 1.48501 * 109.47116 * 240.00254 * 22 20 18 26 26 C 1.35119 * 111.68698 * 359.91497 * 9 7 6 27 27 O 1.21231 * 127.34081 * 180.09901 * 26 9 7 28 28 H 1.09004 * 109.47174 * 59.99997 * 1 2 3 29 29 H 1.08992 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 300.00230 * 1 2 3 31 31 H 1.09008 * 115.55064 * 199.96820 * 3 2 1 32 32 H 1.09002 * 117.49833 * 359.97438 * 4 3 2 33 33 H 1.09002 * 117.49953 * 144.97630 * 4 3 2 34 34 H 1.09000 * 117.49996 * 107.50493 * 5 4 3 35 35 H 1.08999 * 117.49664 * 252.51862 * 5 4 3 36 36 H 0.96998 * 126.69132 * 298.64186 * 6 2 1 37 37 H 1.08996 * 109.47697 * 209.97884 * 10 9 7 38 38 H 1.09002 * 109.47110 * 329.98232 * 10 9 7 39 39 H 1.08993 * 109.46965 * 299.99896 * 14 13 11 40 40 H 1.09001 * 109.46915 * 60.00062 * 14 13 11 41 41 H 0.97003 * 119.99716 * 359.97438 * 17 15 14 42 42 H 0.97004 * 119.99677 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.5729 2.3721 1.1021 5 6 1.0833 2.5567 -0.3357 6 7 2.0482 -0.7476 1.1586 7 6 2.7627 -1.7752 0.6653 8 8 3.3319 -2.5963 1.3574 9 7 2.7758 -1.7929 -0.6724 10 6 3.4750 -2.7992 -1.4754 11 6 2.5478 -3.9548 -1.7509 12 8 1.4187 -3.9393 -1.3211 13 8 2.9763 -5.0015 -2.4738 14 6 2.0290 -6.0784 -2.7002 15 6 2.6826 -7.1571 -3.5250 16 8 3.8336 -7.0310 -3.8861 17 7 1.9880 -8.2621 -3.8614 18 6 2.5827 -9.2437 -4.6113 19 1 3.6075 -9.1314 -4.9329 20 6 1.8668 -10.3831 -4.9577 21 7 0.6195 -10.5195 -4.5668 22 14 2.6767 -11.7203 -5.9801 23 1 4.0747 -11.3273 -6.2910 24 1 2.6782 -12.9942 -5.2172 25 1 1.9211 -11.9020 -7.2455 26 6 2.0626 -0.7698 -1.1923 27 8 1.8856 -0.5179 -2.3649 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0972 1.5487 -0.3359 32 1 0.8653 1.9695 1.8269 33 1 2.2786 3.1059 1.4916 34 1 0.0536 2.2756 -0.5567 35 1 1.4672 3.4117 -0.8921 36 1 1.9031 -0.5393 2.0948 37 1 3.7922 -2.3550 -2.4188 38 1 4.3486 -3.1563 -0.9300 39 1 1.7147 -6.4930 -1.7425 40 1 1.1595 -5.6917 -3.2317 41 1 1.0676 -8.3631 -3.5722 42 1 0.1199 -11.3151 -4.8083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:08 Heat of formation + Delta-G solvation = -123.085861 kcal Electronic energy + Delta-G solvation = -29182.509002 eV Core-core repulsion = 24744.428718 eV Total energy + Delta-G solvation = -4438.080284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.98843 -40.35822 -39.07820 -38.47185 -38.09229 -36.34445 -36.07857 -34.78069 -34.00521 -31.39076 -30.65009 -29.86616 -27.99263 -26.04483 -24.63602 -23.57391 -23.07166 -22.38185 -20.59866 -20.32540 -19.60132 -18.34031 -18.17863 -18.04290 -17.32388 -16.79627 -16.66706 -16.44960 -15.96081 -15.80187 -15.59705 -15.44556 -14.89412 -14.51002 -14.34500 -14.28244 -13.91806 -13.89848 -13.18184 -12.99613 -12.90343 -12.81995 -12.33227 -12.15812 -12.04725 -11.83978 -11.62430 -11.54065 -11.15117 -11.13172 -10.96199 -10.78976 -10.48269 -10.42115 -10.38571 -10.31020 -10.11914 -9.86380 -9.61714 -8.53274 -8.08392 -6.49903 -3.91908 1.25676 1.58905 2.14228 2.40178 2.63826 2.92466 3.07631 3.12191 3.24429 3.32108 3.62211 3.73015 3.86097 4.08404 4.10423 4.29842 4.42896 4.50753 4.52583 4.68470 4.88323 4.90672 4.95764 5.06966 5.11270 5.13925 5.14962 5.27046 5.29308 5.42388 5.50218 5.53009 5.61412 5.67630 6.03416 6.39562 6.50424 6.62999 6.97657 7.48322 7.67236 7.78535 7.94553 8.48078 9.07119 9.39011 9.88638 10.67363 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.002018 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.278118 B =13869.014477 C =14016.724816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 C -0.161 4.161 4 C -0.164 4.164 5 C -0.163 4.163 6 N -0.714 5.714 7 C 0.710 3.290 8 O -0.535 6.535 9 N -0.566 5.566 10 C 0.128 3.872 11 C 0.447 3.553 12 O -0.506 6.506 13 O -0.319 6.319 14 C 0.062 3.938 15 C 0.439 3.561 16 O -0.575 6.575 17 N -0.552 5.552 18 C -0.301 4.301 19 H 0.107 0.893 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.934 3.066 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.539 3.461 27 O -0.450 6.450 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.440 0.560 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 27.020 12.341 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.066 3.934 3 C -0.181 4.181 4 C -0.202 4.202 5 C -0.200 4.200 6 N -0.378 5.378 7 C 0.410 3.590 8 O -0.407 6.407 9 N -0.314 5.314 10 C 0.005 3.995 11 C 0.288 3.712 12 O -0.394 6.394 13 O -0.233 6.233 14 C -0.016 4.016 15 C 0.223 3.777 16 O -0.459 6.459 17 N -0.190 5.190 18 C -0.431 4.431 19 H 0.125 0.875 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.761 3.239 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.325 3.675 27 O -0.317 6.317 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.284 0.716 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.092 26.516 11.811 29.048 hybrid contribution -0.529 -0.863 0.145 1.022 sum -1.621 25.653 11.956 28.349 Atomic orbital electron populations 1.22143 0.90044 1.04603 1.04376 1.20793 0.96938 0.91569 0.84135 1.22237 1.00408 0.88166 1.07267 1.22996 1.03600 1.01491 0.92066 1.23190 0.99652 0.98982 0.98191 1.45551 1.54688 1.28623 1.08967 1.15746 0.79698 0.82201 0.81321 1.91054 1.48201 1.41000 1.60471 1.46056 1.49930 1.27357 1.08017 1.20993 0.93862 0.85528 0.99071 1.23728 0.87729 0.84016 0.75728 1.90668 1.20441 1.79472 1.48802 1.86513 1.44237 1.27657 1.64858 1.22804 0.91024 0.86283 1.01451 1.19278 0.87913 0.84111 0.86364 1.90566 1.17508 1.79419 1.58395 1.41709 1.14466 1.15842 1.46941 1.19784 0.99228 0.96165 1.27875 0.87503 1.25329 0.95604 0.98786 0.98125 1.69629 1.08863 1.29487 1.45769 0.85728 0.79400 0.79832 0.78964 1.19060 1.20622 1.20630 1.20771 0.76695 0.80046 0.89958 1.90823 1.55439 1.68988 1.16474 0.89315 0.90565 0.90054 0.86701 0.88242 0.87989 0.87453 0.87913 0.71551 0.84071 0.83846 0.89374 0.89413 0.77154 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.64 37.16 0.28 -0.66 16 2 C 0.16 1.16 1.18 -132.10 -0.16 1.00 16 3 C -0.16 -0.88 5.41 -90.59 -0.49 -1.37 16 4 C -0.16 -0.54 9.89 -26.73 -0.26 -0.81 16 5 C -0.16 -0.66 9.70 -26.69 -0.26 -0.92 16 6 N -0.71 -5.53 5.90 -52.94 -0.31 -5.84 16 7 C 0.71 8.42 8.63 -88.02 -0.76 7.66 16 8 O -0.53 -8.15 17.48 5.33 0.09 -8.06 16 9 N -0.57 -6.67 2.10 -121.92 -0.26 -6.93 16 10 C 0.13 1.54 6.29 -5.19 -0.03 1.50 16 11 C 0.45 7.27 8.03 36.01 0.29 7.56 16 12 O -0.51 -9.17 16.18 -18.75 -0.30 -9.47 16 13 O -0.32 -6.00 9.75 -45.89 -0.45 -6.44 16 14 C 0.06 1.21 5.94 36.00 0.21 1.42 16 15 C 0.44 10.72 7.86 -10.98 -0.09 10.63 16 16 O -0.57 -16.09 16.08 -14.11 -0.23 -16.32 16 17 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.11 3.10 7.16 -52.49 -0.38 2.72 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.54 5.95 7.00 -10.39 -0.07 5.88 16 27 O -0.45 -5.97 17.78 5.60 0.10 -5.87 16 28 H 0.09 0.51 6.81 -51.93 -0.35 0.16 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.29 7.05 -51.93 -0.37 -0.07 16 31 H 0.11 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.10 0.24 7.31 -51.93 -0.38 -0.14 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.11 0.39 5.99 -51.93 -0.31 0.08 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.44 2.28 8.96 -40.82 -0.37 1.91 16 37 H 0.14 1.36 8.02 -51.93 -0.42 0.94 16 38 H 0.14 1.47 7.86 -51.93 -0.41 1.07 16 39 H 0.09 1.59 8.13 -51.93 -0.42 1.16 16 40 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -36.62 371.45 -6.66 -43.28 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.97 Total: 8.02 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: -1.57 Total: 23.91 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.10 Total: -50.47 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.79 Total: -46.16 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.62 -6.66 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.810 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds