Wall clock time and date at job start Tue Mar 31 2020 22:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.53665 * 2 1 4 4 C 1.53000 * 117.49920 * 54.30039 * 3 2 1 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 3 2 6 6 N 1.47308 * 110.59777 * 122.83209 * 2 1 3 7 7 C 1.34525 * 106.62205 * 118.68113 * 6 2 1 8 8 O 1.21543 * 123.77642 * 180.02562 * 7 6 2 9 9 N 1.33788 * 112.45791 * 359.97438 * 7 6 2 10 10 C 1.46500 * 124.18147 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46880 * 89.97839 * 10 9 7 12 12 O 1.20827 * 120.00278 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.45202 * 117.00378 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47144 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99855 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99843 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00300 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99804 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99880 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46841 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47261 * 120.00127 * 22 20 18 25 25 H 1.48501 * 109.47116 * 240.00254 * 22 20 18 26 26 C 1.35119 * 111.68698 * 359.91497 * 9 7 6 27 27 O 1.21231 * 127.34081 * 180.09901 * 26 9 7 28 28 H 1.09004 * 109.47174 * 59.99997 * 1 2 3 29 29 H 1.08992 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 300.00230 * 1 2 3 31 31 H 1.09008 * 115.55064 * 199.96820 * 3 2 1 32 32 H 1.09002 * 117.49833 * 359.97438 * 4 3 2 33 33 H 1.09002 * 117.49953 * 144.97630 * 4 3 2 34 34 H 1.09000 * 117.49996 * 107.50493 * 5 4 3 35 35 H 1.08999 * 117.49664 * 252.51862 * 5 4 3 36 36 H 0.96998 * 126.69132 * 298.64186 * 6 2 1 37 37 H 1.08996 * 109.47697 * 209.97884 * 10 9 7 38 38 H 1.09002 * 109.47110 * 329.98232 * 10 9 7 39 39 H 1.08993 * 109.46965 * 299.99896 * 14 13 11 40 40 H 1.09001 * 109.46915 * 60.00062 * 14 13 11 41 41 H 0.97003 * 119.99716 * 359.97438 * 17 15 14 42 42 H 0.97004 * 119.99677 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.5729 2.3721 1.1021 5 6 1.0833 2.5567 -0.3357 6 7 2.0482 -0.7476 1.1586 7 6 2.7627 -1.7752 0.6653 8 8 3.3319 -2.5963 1.3574 9 7 2.7758 -1.7929 -0.6724 10 6 3.4750 -2.7992 -1.4754 11 6 2.5478 -3.9548 -1.7509 12 8 1.4187 -3.9393 -1.3211 13 8 2.9763 -5.0015 -2.4738 14 6 2.0290 -6.0784 -2.7002 15 6 2.6826 -7.1571 -3.5250 16 8 3.8336 -7.0310 -3.8861 17 7 1.9880 -8.2621 -3.8614 18 6 2.5827 -9.2437 -4.6113 19 1 3.6075 -9.1314 -4.9329 20 6 1.8668 -10.3831 -4.9577 21 7 0.6195 -10.5195 -4.5668 22 14 2.6767 -11.7203 -5.9801 23 1 4.0747 -11.3273 -6.2910 24 1 2.6782 -12.9942 -5.2172 25 1 1.9211 -11.9020 -7.2455 26 6 2.0626 -0.7698 -1.1923 27 8 1.8856 -0.5179 -2.3649 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0972 1.5487 -0.3359 32 1 0.8653 1.9695 1.8269 33 1 2.2786 3.1059 1.4916 34 1 0.0536 2.2756 -0.5567 35 1 1.4672 3.4117 -0.8921 36 1 1.9031 -0.5393 2.0948 37 1 3.7922 -2.3550 -2.4188 38 1 4.3486 -3.1563 -0.9300 39 1 1.7147 -6.4930 -1.7425 40 1 1.1595 -5.6917 -3.2317 41 1 1.0676 -8.3631 -3.5722 42 1 0.1199 -11.3151 -4.8083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:08 Heat of formation + Delta-G solvation = -149.450758 kcal Electronic energy + Delta-G solvation = -29183.652269 eV Core-core repulsion = 24744.428718 eV Total energy + Delta-G solvation = -4439.223551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.82864 -41.73751 -40.11148 -39.95350 -39.00938 -37.73979 -37.04042 -36.06874 -35.56320 -33.45208 -31.28025 -31.05035 -29.47820 -26.79047 -26.47524 -24.35913 -23.70109 -23.13608 -21.58001 -21.49910 -21.00532 -20.11890 -19.37871 -19.19288 -18.22471 -17.97901 -17.88214 -17.65008 -17.18778 -16.75153 -16.68775 -16.58791 -16.28977 -15.91229 -15.74802 -15.54732 -15.17360 -14.69098 -14.49356 -14.34666 -13.72672 -13.65073 -13.58568 -13.48361 -13.29612 -12.95915 -12.85085 -12.48967 -12.34061 -12.21575 -12.11434 -12.09848 -11.99856 -11.70076 -11.61185 -11.27480 -11.24234 -11.05441 -10.58500 -10.54712 -10.14672 -8.54753 -6.05602 0.38809 0.64933 0.84774 1.30375 1.33034 1.42836 1.57339 1.82808 1.86000 1.95410 2.28351 2.54930 2.93358 3.06513 3.10433 3.36491 3.45780 3.54217 3.71548 3.92058 3.95094 4.03032 4.07350 4.09443 4.13402 4.16625 4.27545 4.34748 4.60379 4.65614 4.89338 4.95436 5.04107 5.10047 5.23248 5.30717 5.35267 5.70049 5.78492 5.85821 6.13659 6.33966 6.46781 6.94471 7.00000 7.35946 7.89058 8.62488 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.002018 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.278118 B =13869.014477 C =14016.724816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 C -0.178 4.178 4 C -0.146 4.146 5 C -0.163 4.163 6 N -0.692 5.692 7 C 0.705 3.295 8 O -0.574 6.574 9 N -0.571 5.571 10 C 0.129 3.871 11 C 0.447 3.553 12 O -0.526 6.526 13 O -0.334 6.334 14 C 0.072 3.928 15 C 0.437 3.563 16 O -0.616 6.616 17 N -0.557 5.557 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 1.000 3.000 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.531 3.469 27 O -0.477 6.477 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.453 0.547 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.400 0.600 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 28.469 13.176 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 C -0.198 4.198 4 C -0.182 4.182 5 C -0.200 4.200 6 N -0.357 5.357 7 C 0.405 3.595 8 O -0.450 6.450 9 N -0.318 5.318 10 C 0.006 3.994 11 C 0.289 3.711 12 O -0.416 6.416 13 O -0.248 6.248 14 C -0.005 4.005 15 C 0.223 3.777 16 O -0.502 6.502 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.103 0.897 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.823 3.177 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.194 1.194 26 C 0.320 3.680 27 O -0.346 6.346 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.301 0.699 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.234 0.766 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.973 28.015 12.682 30.814 hybrid contribution -0.311 -1.237 -0.098 1.279 sum -2.284 26.777 12.584 29.675 Atomic orbital electron populations 1.22200 0.88642 1.03886 1.06271 1.20877 0.97687 0.92032 0.81948 1.22167 1.00490 0.87071 1.10036 1.23131 1.03295 1.00081 0.91739 1.23308 0.99513 0.98155 0.99034 1.45504 1.53057 1.27217 1.09891 1.15924 0.79816 0.82582 0.81139 1.91025 1.50084 1.42701 1.61170 1.46204 1.50066 1.27318 1.08205 1.21213 0.93211 0.84373 1.00628 1.24541 0.88131 0.83893 0.74512 1.90649 1.21564 1.79791 1.49555 1.86516 1.44424 1.28158 1.65747 1.22559 0.90866 0.85595 1.01486 1.20020 0.87403 0.84508 0.85764 1.90529 1.19385 1.80361 1.59953 1.41745 1.14693 1.16055 1.46920 1.19776 0.98982 0.97898 1.30005 0.89650 1.26169 0.96088 1.00258 0.98569 1.69685 1.09628 1.30310 1.45891 0.84768 0.78193 0.77027 0.77715 1.19499 1.19432 1.19405 1.21454 0.76044 0.79902 0.90637 1.90801 1.56359 1.69654 1.17800 0.88789 0.92556 0.86835 0.87349 0.86708 0.87054 0.86838 0.87513 0.69919 0.81751 0.82185 0.87674 0.87510 0.76578 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.64 71.98 0.55 -1.00 16 2 C 0.16 2.18 1.18 2.98 0.00 2.18 16 3 C -0.18 -1.57 5.41 -10.77 -0.06 -1.63 16 4 C -0.15 -0.48 9.89 30.60 0.30 -0.18 16 5 C -0.16 -0.90 9.70 30.62 0.30 -0.60 16 6 N -0.69 -9.66 5.90 -439.83 -2.60 -12.26 16 7 C 0.70 16.32 8.63 179.44 1.55 17.87 16 8 O -0.57 -17.46 17.48 -3.85 -0.07 -17.52 16 9 N -0.57 -13.21 2.10 -776.71 -1.63 -14.85 16 10 C 0.13 3.03 6.29 85.63 0.54 3.57 16 11 C 0.45 14.48 8.03 71.24 0.57 15.05 16 12 O -0.53 -19.02 16.18 21.96 0.36 -18.66 16 13 O -0.33 -12.61 9.75 -45.02 -0.44 -13.05 16 14 C 0.07 2.82 5.94 71.24 0.42 3.24 16 15 C 0.44 21.77 7.86 87.66 0.69 22.46 16 16 O -0.62 -35.47 16.08 15.73 0.25 -35.22 16 17 N -0.56 -29.05 5.29 -306.98 -1.62 -30.67 16 18 C -0.34 -19.17 9.68 84.04 0.81 -18.35 16 19 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 20 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 21 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 22 Si 1.00 42.43 29.55 68.60 2.03 44.45 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.53 11.41 7.00 87.89 0.62 12.03 16 27 O -0.48 -12.54 17.78 -2.88 -0.05 -12.59 16 28 H 0.09 0.90 6.81 -2.39 -0.02 0.88 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.42 7.05 -2.39 -0.02 0.40 16 31 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.11 0.05 7.31 -2.39 -0.02 0.03 16 33 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.11 0.50 5.99 -2.39 -0.01 0.48 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.45 3.71 8.96 -92.71 -0.83 2.88 16 37 H 0.17 3.06 8.02 -2.39 -0.02 3.04 16 38 H 0.16 3.23 7.86 -2.39 -0.02 3.21 16 39 H 0.11 3.75 8.13 -2.39 -0.02 3.73 16 40 H 0.11 3.76 8.13 -2.39 -0.02 3.74 16 41 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 42 H 0.28 13.99 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -80.35 371.45 2.82 -77.53 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.45 Total: 27.04 kcal Atomic # 6 Polarization: 47.80 SS G_CDS: 6.76 Total: 54.56 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.57 Total: -106.54 kcal Atomic # 8 Polarization: -97.10 SS G_CDS: 0.05 Total: -97.05 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -80.35 2.82 -77.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.922 kcal (2) G-P(sol) polarization free energy of solvation -80.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds