Wall clock time and date at job start Tue Mar 31 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86809 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46714 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46971 * 299.99396 * 3 2 1 6 6 H 1.48493 * 109.47111 * 59.99863 * 3 2 1 7 7 C 1.38940 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00413 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.34784 * 120.00143 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99859 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99857 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00265 * 179.97438 * 13 12 10 15 15 O 1.20830 * 119.99445 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47466 * 179.97438 * 16 14 13 18 18 C 1.34009 * 124.22468 * 89.96979 * 17 16 14 19 19 O 1.21541 * 123.81505 * 359.94235 * 18 17 16 20 20 N 1.34980 * 112.36947 * 179.97438 * 18 17 16 21 21 C 1.45939 * 105.99523 * 0.02562 * 20 18 17 22 22 C 1.53571 * 112.01135 * 238.41429 * 21 20 18 23 23 C 1.54499 * 104.08611 * 275.02034 * 22 21 20 24 24 C 1.53977 * 106.66178 * 337.67240 * 23 22 21 25 25 C 1.53571 * 112.01079 * 121.58181 * 21 20 18 26 26 C 1.35208 * 124.22026 * 269.95417 * 17 16 14 27 27 O 1.21235 * 127.46858 * 0.03162 * 26 17 16 28 28 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00067 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47095 * 60.00270 * 12 10 9 31 31 H 1.09004 * 109.47061 * 299.99564 * 12 10 9 32 32 H 1.09000 * 109.47200 * 59.99252 * 16 14 13 33 33 H 1.09000 * 109.46739 * 299.99853 * 16 14 13 34 34 H 0.97002 * 127.00288 * 180.02562 * 20 18 17 35 35 H 1.08999 * 110.50635 * 156.36822 * 22 21 20 36 36 H 1.08999 * 110.50963 * 33.67130 * 22 21 20 37 37 H 1.08999 * 110.02012 * 218.37913 * 23 22 21 38 38 H 1.08993 * 110.02517 * 96.97182 * 23 22 21 39 39 H 1.08997 * 110.01708 * 119.30557 * 24 23 22 40 40 H 1.09001 * 110.01783 * 240.70100 * 24 23 22 41 41 H 1.09000 * 110.51149 * 326.32653 * 25 21 20 42 42 H 1.09003 * 110.50881 * 203.63378 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8894 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8629 0.0022 13 8 2.1874 -5.9665 0.0027 14 6 1.6745 -7.2069 0.0038 15 8 0.4766 -7.3652 0.0048 16 6 2.5925 -8.4020 0.0049 17 7 1.7947 -9.6307 0.0066 18 6 1.3834 -10.2638 -1.1006 19 8 1.6293 -9.8830 -2.2283 20 7 0.6647 -11.3718 -0.8218 21 6 0.6082 -11.4587 0.6339 22 6 1.1986 -12.7771 1.1551 23 6 0.0229 -13.7757 1.0693 24 6 -1.2689 -12.9377 1.0693 25 6 -0.8364 -11.4570 1.1550 26 6 1.3817 -10.2676 1.1255 27 8 1.5897 -9.9469 2.2760 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6169 -4.9208 -0.8875 31 1 0.6176 -4.9205 0.8925 32 1 3.2213 -8.3763 0.8949 33 1 3.2213 -8.3779 -0.8851 34 1 0.2668 -11.9853 -1.4591 35 1 1.5301 -12.6653 2.1875 36 1 2.0235 -13.1031 0.5215 37 1 0.0353 -14.4419 1.9318 38 1 0.0917 -14.3550 0.1486 39 1 -1.8261 -13.1110 0.1486 40 1 -1.8824 -13.1979 1.9318 41 1 -1.4703 -10.8367 0.5212 42 1 -0.8696 -11.1086 2.1873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:10 Heat of formation + Delta-G solvation = -160.224417 kcal Electronic energy + Delta-G solvation = -29264.484485 eV Core-core repulsion = 24824.793752 eV Total energy + Delta-G solvation = -4439.690732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08592 -40.37352 -39.07750 -38.41906 -38.05188 -36.34853 -35.90689 -34.17655 -34.00604 -31.39151 -29.89056 -29.51548 -28.85596 -27.85983 -24.65962 -24.01525 -22.59604 -21.12005 -21.08918 -20.53040 -19.60290 -18.38084 -18.13811 -18.02659 -17.09546 -16.73530 -16.49016 -16.42915 -16.31383 -15.67724 -15.51633 -15.32851 -15.09785 -14.55818 -14.45009 -14.28627 -14.08325 -13.91094 -13.10665 -12.99571 -12.90985 -12.38382 -12.24819 -12.15669 -12.04703 -11.87440 -11.78764 -11.62434 -11.22279 -11.15191 -11.03837 -10.95559 -10.52588 -10.47893 -10.38619 -10.31185 -10.11575 -9.82974 -9.61810 -8.53366 -8.08514 -6.49932 -3.91994 1.22344 1.60354 2.14170 2.42476 2.70409 2.91181 3.12144 3.24357 3.32022 3.46042 3.72919 3.85824 3.89192 4.10248 4.43787 4.48085 4.50621 4.65942 4.76579 4.82053 4.90130 4.93516 4.98941 5.06017 5.12879 5.14921 5.23768 5.34946 5.43823 5.50125 5.53818 5.57115 5.67544 5.72687 6.03334 6.39247 6.50396 6.62108 6.97317 7.48234 7.66886 7.77126 7.94479 8.47992 9.07053 9.38938 9.88542 10.67350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029335 B = 0.002047 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.260997 B =13675.764294 C =13870.161518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.575 6.575 12 C 0.062 3.938 13 O -0.319 6.319 14 C 0.447 3.553 15 O -0.505 6.505 16 C 0.129 3.871 17 N -0.567 5.567 18 C 0.708 3.292 19 O -0.533 6.533 20 N -0.709 5.709 21 C 0.115 3.885 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.118 4.118 26 C 0.542 3.458 27 O -0.453 6.453 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.441 0.559 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -29.363 2.098 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.459 6.459 12 C -0.016 4.016 13 O -0.233 6.233 14 C 0.288 3.712 15 O -0.393 6.393 16 C 0.006 3.994 17 N -0.314 5.314 18 C 0.409 3.591 19 O -0.405 6.405 20 N -0.373 5.373 21 C 0.023 3.977 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.157 4.157 26 C 0.329 3.671 27 O -0.321 6.321 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.286 0.714 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.020 -28.720 2.137 28.870 hybrid contribution -0.726 0.748 -0.324 1.092 sum -2.745 -27.972 1.813 28.165 Atomic orbital electron populations 1.69621 1.06013 1.28398 1.49719 1.25324 0.95703 0.99909 0.96899 0.85730 0.79719 0.80699 0.77790 1.19059 1.20626 1.20620 1.19783 0.93524 0.81695 1.48046 0.87505 1.41711 1.09384 1.04079 1.63787 1.19278 0.88328 0.84009 0.86049 1.90566 1.13347 1.86751 1.55230 1.22804 0.90792 0.84325 1.03639 1.86513 1.40335 1.13747 1.82680 1.23732 0.88834 0.85498 0.73171 1.90672 1.16571 1.86776 1.45330 1.20988 0.91397 0.77876 1.09183 1.46153 1.51625 1.24890 1.08769 1.15927 0.78650 0.80593 0.83907 1.91051 1.60397 1.69022 1.20023 1.45218 1.57373 1.28009 1.06746 1.21374 0.98554 0.95637 0.82116 1.22512 0.98863 0.91332 1.02900 1.22213 0.93308 0.97676 1.02848 1.22221 0.97701 0.93239 1.02928 1.22507 0.91588 0.98484 1.03102 1.20453 0.78005 0.83941 0.84739 1.90829 1.54716 1.69215 1.17348 0.91670 0.77154 0.89379 0.89416 0.84059 0.83882 0.71364 0.88810 0.89797 0.90661 0.91152 0.91134 0.90636 0.89581 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.49 0.72 -23.52 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.11 3.10 7.16 -52.48 -0.38 2.72 16 9 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C 0.44 10.71 7.86 -10.98 -0.09 10.63 16 11 O -0.57 -16.09 16.08 -14.11 -0.23 -16.31 16 12 C 0.06 1.21 5.94 36.00 0.21 1.42 16 13 O -0.32 -5.99 9.75 -45.90 -0.45 -6.44 16 14 C 0.45 7.25 8.03 36.00 0.29 7.54 16 15 O -0.51 -9.17 16.18 -18.75 -0.30 -9.47 16 16 C 0.13 1.52 6.31 -5.20 -0.03 1.49 16 17 N -0.57 -6.61 2.11 -122.23 -0.26 -6.87 16 18 C 0.71 8.30 8.64 -87.42 -0.76 7.55 16 19 O -0.53 -8.04 17.50 5.33 0.09 -7.95 16 20 N -0.71 -5.40 6.03 -53.62 -0.32 -5.72 16 21 C 0.11 0.85 1.04 -132.88 -0.14 0.71 16 22 C -0.12 -0.58 6.02 -25.65 -0.15 -0.73 16 23 C -0.12 -0.41 6.82 -25.44 -0.17 -0.58 16 24 C -0.12 -0.48 6.82 -25.44 -0.17 -0.66 16 25 C -0.12 -0.77 6.03 -25.65 -0.15 -0.92 16 26 C 0.54 5.88 7.02 -10.99 -0.08 5.81 16 27 O -0.45 -5.91 17.79 5.60 0.10 -5.81 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 30 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 31 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 32 H 0.14 1.34 8.02 -51.93 -0.42 0.92 16 33 H 0.14 1.45 7.87 -51.93 -0.41 1.05 16 34 H 0.44 2.25 8.96 -40.82 -0.37 1.89 16 35 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -36.38 369.84 -6.88 -43.26 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.24 Total: 7.36 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: -1.48 Total: 24.27 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.09 Total: -50.29 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.79 Total: -45.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.38 -6.88 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.968 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds