Wall clock time and date at job start Tue Mar 31 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86809 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46714 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46971 * 299.99396 * 3 2 1 6 6 H 1.48493 * 109.47111 * 59.99863 * 3 2 1 7 7 C 1.38940 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00413 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.34784 * 120.00143 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99859 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99857 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00265 * 179.97438 * 13 12 10 15 15 O 1.20830 * 119.99445 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47466 * 179.97438 * 16 14 13 18 18 C 1.34009 * 124.22468 * 89.96979 * 17 16 14 19 19 O 1.21541 * 123.81505 * 359.94235 * 18 17 16 20 20 N 1.34980 * 112.36947 * 179.97438 * 18 17 16 21 21 C 1.45939 * 105.99523 * 0.02562 * 20 18 17 22 22 C 1.53571 * 112.01135 * 238.41429 * 21 20 18 23 23 C 1.54499 * 104.08611 * 275.02034 * 22 21 20 24 24 C 1.53977 * 106.66178 * 337.67240 * 23 22 21 25 25 C 1.53571 * 112.01079 * 121.58181 * 21 20 18 26 26 C 1.35208 * 124.22026 * 269.95417 * 17 16 14 27 27 O 1.21235 * 127.46858 * 0.03162 * 26 17 16 28 28 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00067 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47095 * 60.00270 * 12 10 9 31 31 H 1.09004 * 109.47061 * 299.99564 * 12 10 9 32 32 H 1.09000 * 109.47200 * 59.99252 * 16 14 13 33 33 H 1.09000 * 109.46739 * 299.99853 * 16 14 13 34 34 H 0.97002 * 127.00288 * 180.02562 * 20 18 17 35 35 H 1.08999 * 110.50635 * 156.36822 * 22 21 20 36 36 H 1.08999 * 110.50963 * 33.67130 * 22 21 20 37 37 H 1.08999 * 110.02012 * 218.37913 * 23 22 21 38 38 H 1.08993 * 110.02517 * 96.97182 * 23 22 21 39 39 H 1.08997 * 110.01708 * 119.30557 * 24 23 22 40 40 H 1.09001 * 110.01783 * 240.70100 * 24 23 22 41 41 H 1.09000 * 110.51149 * 326.32653 * 25 21 20 42 42 H 1.09003 * 110.50881 * 203.63378 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8894 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8629 0.0022 13 8 2.1874 -5.9665 0.0027 14 6 1.6745 -7.2069 0.0038 15 8 0.4766 -7.3652 0.0048 16 6 2.5925 -8.4020 0.0049 17 7 1.7947 -9.6307 0.0066 18 6 1.3834 -10.2638 -1.1006 19 8 1.6293 -9.8830 -2.2283 20 7 0.6647 -11.3718 -0.8218 21 6 0.6082 -11.4587 0.6339 22 6 1.1986 -12.7771 1.1551 23 6 0.0229 -13.7757 1.0693 24 6 -1.2689 -12.9377 1.0693 25 6 -0.8364 -11.4570 1.1550 26 6 1.3817 -10.2676 1.1255 27 8 1.5897 -9.9469 2.2760 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6169 -4.9208 -0.8875 31 1 0.6176 -4.9205 0.8925 32 1 3.2213 -8.3763 0.8949 33 1 3.2213 -8.3779 -0.8851 34 1 0.2668 -11.9853 -1.4591 35 1 1.5301 -12.6653 2.1875 36 1 2.0235 -13.1031 0.5215 37 1 0.0353 -14.4419 1.9318 38 1 0.0917 -14.3550 0.1486 39 1 -1.8261 -13.1110 0.1486 40 1 -1.8824 -13.1979 1.9318 41 1 -1.4703 -10.8367 0.5212 42 1 -0.8696 -11.1086 2.1873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:10 Heat of formation + Delta-G solvation = -186.448665 kcal Electronic energy + Delta-G solvation = -29265.621653 eV Core-core repulsion = 24824.793752 eV Total energy + Delta-G solvation = -4440.827901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91464 -41.75013 -40.12001 -39.96647 -38.98099 -37.73794 -36.91825 -36.06935 -34.91163 -33.45288 -31.08208 -29.92674 -29.72608 -29.07039 -26.60700 -24.82992 -23.68628 -21.89193 -21.51209 -21.50065 -21.44898 -20.11926 -19.35121 -19.22747 -18.21466 -17.97117 -17.71868 -17.55759 -17.13122 -16.99450 -16.68840 -16.32668 -16.19630 -15.92171 -15.72591 -15.60937 -15.39614 -14.75803 -14.56630 -14.34561 -13.72295 -13.66946 -13.58628 -13.48106 -12.95984 -12.92762 -12.74494 -12.49021 -12.24528 -12.21479 -12.14945 -12.11435 -12.06390 -11.99917 -11.61247 -11.38178 -11.33665 -11.20573 -10.56548 -10.52164 -10.14793 -8.54759 -6.05672 0.36118 0.65281 0.84995 1.31619 1.33010 1.42876 1.57316 1.82738 1.84028 2.02135 2.28273 2.74776 2.93475 3.10424 3.35533 3.37341 3.45995 3.68990 3.91983 4.01130 4.04977 4.07913 4.10403 4.16435 4.22941 4.37611 4.41694 4.43763 4.64992 4.77492 4.97886 5.01822 5.10277 5.23067 5.27348 5.35190 5.44519 5.69301 5.78233 5.85780 6.14130 6.34128 6.46752 6.93405 6.99949 7.35891 7.88939 8.62504 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029335 B = 0.002047 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.260997 B =13675.764294 C =13870.161518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.072 3.928 13 O -0.334 6.334 14 C 0.446 3.554 15 O -0.527 6.527 16 C 0.129 3.871 17 N -0.572 5.572 18 C 0.704 3.296 19 O -0.571 6.571 20 N -0.686 5.686 21 C 0.117 3.883 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.119 4.119 26 C 0.536 3.464 27 O -0.479 6.479 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.455 0.545 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -30.980 2.249 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.248 6.248 14 C 0.289 3.711 15 O -0.416 6.416 16 C 0.006 3.994 17 N -0.319 5.319 18 C 0.405 3.595 19 O -0.447 6.447 20 N -0.351 5.351 21 C 0.026 3.974 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.158 4.158 26 C 0.324 3.676 27 O -0.349 6.349 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.303 0.697 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.664 -30.396 2.297 30.599 hybrid contribution -0.586 1.208 -0.340 1.385 sum -3.250 -29.188 1.956 29.433 Atomic orbital electron populations 1.69678 1.06990 1.29729 1.49138 1.26166 0.96620 1.02694 0.95607 0.84770 0.78078 0.76421 0.78446 1.19483 1.19450 1.19391 1.19775 0.92987 0.83274 1.50597 0.89642 1.41749 1.09567 1.04198 1.63921 1.20018 0.88078 0.85270 0.84316 1.90530 1.15303 1.87639 1.56739 1.22556 0.90164 0.82461 1.05322 1.86517 1.40588 1.14546 1.83183 1.24570 0.89284 0.85339 0.71936 1.90654 1.17718 1.86829 1.46429 1.21217 0.90733 0.76243 1.11176 1.46295 1.51680 1.24640 1.09243 1.16093 0.78856 0.81270 0.83293 1.91025 1.62084 1.70227 1.21321 1.45138 1.55873 1.26786 1.07280 1.21538 0.98923 0.95389 0.81527 1.22555 0.99839 0.89937 1.02774 1.22223 0.91790 0.97212 1.04221 1.22223 0.98286 0.91078 1.03918 1.22538 0.90586 1.00441 1.02245 1.21056 0.77680 0.84600 0.84220 1.90811 1.55744 1.70107 1.18204 0.90927 0.76585 0.87699 0.87543 0.81656 0.82143 0.69736 0.88992 0.88842 0.89544 0.89640 0.90054 0.89849 0.90644 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 2 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 3 Si 1.00 42.40 29.55 68.60 2.03 44.43 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 8 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 9 N -0.56 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.44 21.75 7.86 87.65 0.69 22.44 16 11 O -0.62 -35.40 16.08 15.72 0.25 -35.15 16 12 C 0.07 2.82 5.94 71.23 0.42 3.24 16 13 O -0.33 -12.56 9.75 -45.03 -0.44 -13.00 16 14 C 0.45 14.38 8.03 71.23 0.57 14.95 16 15 O -0.53 -19.04 16.18 21.95 0.36 -18.69 16 16 C 0.13 2.99 6.31 85.63 0.54 3.53 16 17 N -0.57 -12.98 2.11 -777.49 -1.64 -14.62 16 18 C 0.70 15.99 8.64 179.23 1.55 17.54 16 19 O -0.57 -17.11 17.50 -3.85 -0.07 -17.17 16 20 N -0.69 -9.41 6.03 -441.71 -2.66 -12.08 16 21 C 0.12 1.56 1.04 3.22 0.00 1.56 16 22 C -0.11 -0.84 6.02 31.30 0.19 -0.65 16 23 C -0.12 -0.40 6.82 31.43 0.21 -0.18 16 24 C -0.12 -0.61 6.82 31.43 0.21 -0.40 16 25 C -0.12 -1.39 6.03 31.30 0.19 -1.20 16 26 C 0.54 11.27 7.02 87.46 0.61 11.88 16 27 O -0.48 -12.34 17.79 -2.89 -0.05 -12.39 16 28 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 30 H 0.11 3.74 8.13 -2.39 -0.02 3.72 16 31 H 0.11 3.75 8.13 -2.38 -0.02 3.73 16 32 H 0.17 2.99 8.02 -2.39 -0.02 2.97 16 33 H 0.16 3.16 7.87 -2.39 -0.02 3.14 16 34 H 0.45 3.70 8.96 -92.71 -0.83 2.87 16 35 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.15 8.07 -2.39 -0.02 1.14 16 Total: -1.00 -79.51 369.84 2.44 -77.07 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.47 Total: 26.74 kcal Atomic # 6 Polarization: 47.84 SS G_CDS: 6.48 Total: 54.31 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -5.64 Total: -106.15 kcal Atomic # 8 Polarization: -96.45 SS G_CDS: 0.05 Total: -96.40 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -79.51 2.44 -77.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.384 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds