Wall clock time and date at job start Tue Mar 31 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.53625 * 2 1 4 4 C 1.52997 * 117.49899 * 12.36972 * 3 2 1 5 5 C 1.53003 * 117.49921 * 303.70934 * 3 2 1 6 6 N 1.47305 * 110.59741 * 237.17039 * 2 1 3 7 7 C 1.34530 * 106.61945 * 241.47738 * 6 2 1 8 8 O 1.21537 * 123.77234 * 180.02562 * 7 6 2 9 9 N 1.33796 * 112.45737 * 359.97438 * 7 6 2 10 10 C 1.46493 * 124.17788 * 179.97438 * 9 7 6 11 11 C 1.50708 * 109.47132 * 90.02492 * 10 9 7 12 12 O 1.21289 * 119.99579 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99774 * 179.97438 * 11 10 9 14 14 C 1.37104 * 119.99649 * 179.97438 * 13 11 10 15 15 H 1.07992 * 120.00049 * 344.57094 * 14 13 11 16 16 C 1.38946 * 119.99660 * 164.56941 * 14 13 11 17 17 N 1.31420 * 120.00235 * 336.77527 * 16 14 13 18 18 Si 1.86805 * 119.99769 * 156.77433 * 16 14 13 19 19 H 1.48504 * 109.46986 * 265.57347 * 18 16 14 20 20 H 1.48500 * 109.47177 * 25.57482 * 18 16 14 21 21 H 1.48503 * 109.47080 * 145.57540 * 18 16 14 22 22 C 1.46502 * 120.00346 * 0.02562 * 13 11 10 23 23 C 1.50697 * 109.47127 * 275.44700 * 22 13 11 24 24 O 1.20826 * 119.99939 * 359.97438 * 23 22 13 25 25 O 1.34223 * 120.00225 * 180.02562 * 23 22 13 26 26 C 1.34763 * 111.64073 * 0.23465 * 9 7 6 27 27 O 1.21235 * 127.15457 * 179.73701 * 26 9 7 28 28 H 1.09001 * 109.47445 * 182.12883 * 1 2 3 29 29 H 1.09004 * 109.47219 * 302.12927 * 1 2 3 30 30 H 1.09001 * 109.46917 * 62.12653 * 1 2 3 31 31 H 1.08996 * 115.54878 * 158.03953 * 3 2 1 32 32 H 1.09002 * 117.50033 * 0.02562 * 4 3 2 33 33 H 1.08999 * 117.49989 * 145.02155 * 4 3 2 34 34 H 1.08999 * 117.50170 * 214.97572 * 5 3 2 35 35 H 1.09002 * 117.49451 * 359.97438 * 5 3 2 36 36 H 0.97001 * 126.69433 * 61.43458 * 6 2 1 37 37 H 1.09006 * 109.47197 * 330.02845 * 10 9 7 38 38 H 1.08997 * 109.47519 * 210.02855 * 10 9 7 39 39 H 0.97005 * 119.99601 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47140 * 35.44852 * 22 13 11 41 41 H 1.09004 * 109.46889 * 155.44740 * 22 13 11 42 42 H 0.96696 * 117.00782 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.0732 2.5593 0.2907 5 6 1.6092 2.3585 -1.1290 6 7 2.0482 -0.7476 -1.1587 7 6 2.7598 -1.7772 -0.6653 8 8 3.3289 -2.5983 -1.3574 9 7 2.7718 -1.7956 0.6725 10 6 3.4679 -2.8040 1.4754 11 6 4.8756 -2.3420 1.7518 12 8 5.2592 -1.2752 1.3210 13 7 5.7076 -3.1139 2.4787 14 6 6.9883 -2.6939 2.7297 15 1 7.4138 -1.8850 2.1545 16 6 7.7387 -3.3088 3.7244 17 7 7.1359 -3.9416 4.7059 18 14 9.6044 -3.2362 3.6665 19 1 10.1266 -4.4540 2.9960 20 1 10.0296 -2.0325 2.9078 21 1 10.1402 -3.1643 5.0496 22 6 5.2439 -4.4023 2.9996 23 6 4.5221 -4.1861 4.3046 24 8 4.4072 -3.0703 4.7538 25 8 4.0077 -5.2331 4.9686 26 6 2.0598 -0.7752 1.1900 27 8 1.8812 -0.5279 2.3634 28 1 -0.3634 -1.0269 0.0382 29 1 -0.3634 0.5466 0.8703 30 1 -0.3633 0.4805 -0.9085 31 1 3.0857 1.5530 0.3678 32 1 0.0372 2.2797 0.4824 33 1 1.4386 3.4209 0.8494 34 1 2.3271 3.0882 -1.5037 35 1 0.9262 1.9467 -1.8719 36 1 1.9040 -0.5386 -2.0949 37 1 3.4957 -3.7472 0.9296 38 1 2.9401 -2.9454 2.4185 39 1 7.6598 -4.3706 5.4004 40 1 4.5654 -4.8618 2.2809 41 1 6.0996 -5.0578 3.1619 42 1 3.5532 -5.0448 5.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736738679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:00 Heat of formation + Delta-G solvation = -111.375360 kcal Electronic energy + Delta-G solvation = -31229.752560 eV Core-core repulsion = 26792.180082 eV Total energy + Delta-G solvation = -4437.572478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42861 -39.50996 -38.59792 -38.26359 -37.72653 -35.64743 -35.32456 -34.63119 -34.02370 -31.87468 -30.27805 -28.61511 -27.68041 -25.67771 -24.61376 -23.01154 -22.65182 -21.46958 -21.04719 -19.94733 -19.07812 -17.74731 -17.26191 -17.20021 -16.87748 -16.71280 -16.04331 -15.72407 -15.44521 -15.39109 -15.23322 -14.75416 -14.49742 -14.35036 -13.94077 -13.79469 -13.78381 -13.46338 -12.85747 -12.64519 -12.51918 -12.19517 -11.93241 -11.80051 -11.67426 -11.50730 -11.48461 -11.04829 -10.98805 -10.70259 -10.46071 -10.39666 -10.38414 -10.31026 -9.92049 -9.85012 -9.69830 -9.44091 -9.09678 -8.53151 -8.00013 -6.51156 -3.93499 1.83127 2.29019 3.10432 3.11150 3.22818 3.25938 3.30422 3.37582 3.49847 3.56375 4.00180 4.06703 4.18544 4.27925 4.47146 4.64914 4.70639 4.82505 4.95598 5.04512 5.17283 5.25679 5.39488 5.41343 5.45713 5.52987 5.57310 5.68686 5.77892 5.81232 5.87658 5.89302 5.98769 6.37114 6.49891 6.85159 7.25025 7.44828 7.50789 7.59083 7.86677 8.26897 8.32732 8.96801 9.00714 9.21652 9.71210 10.57673 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.003785 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.855218 B = 7396.644277 C = 7917.449058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 C -0.156 4.156 4 C -0.166 4.166 5 C -0.166 4.166 6 N -0.719 5.719 7 C 0.711 3.289 8 O -0.541 6.541 9 N -0.553 5.553 10 C 0.103 3.897 11 C 0.448 3.552 12 O -0.565 6.565 13 N -0.424 5.424 14 C -0.305 4.305 15 H 0.109 0.891 16 C 0.031 3.969 17 N -0.877 5.877 18 Si 0.931 3.069 19 H -0.276 1.276 20 H -0.268 1.268 21 H -0.285 1.285 22 C 0.140 3.860 23 C 0.484 3.516 24 O -0.497 6.497 25 O -0.534 6.534 26 C 0.536 3.464 27 O -0.454 6.454 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.435 0.565 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 3.098 -8.159 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 C -0.175 4.175 4 C -0.203 4.203 5 C -0.203 4.203 6 N -0.383 5.383 7 C 0.412 3.588 8 O -0.415 6.415 9 N -0.298 5.298 10 C -0.022 4.022 11 C 0.235 3.765 12 O -0.448 6.448 13 N -0.144 5.144 14 C -0.432 4.432 15 H 0.127 0.873 16 C -0.172 4.172 17 N -0.517 5.517 18 Si 0.757 3.243 19 H -0.202 1.202 20 H -0.193 1.193 21 H -0.210 1.210 22 C 0.013 3.987 23 C 0.324 3.676 24 O -0.382 6.382 25 O -0.345 6.345 26 C 0.322 3.678 27 O -0.322 6.322 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.279 0.721 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.150 0.850 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.810 3.386 -8.089 16.359 hybrid contribution 0.756 0.094 0.613 0.978 sum -13.054 3.480 -7.475 15.440 Atomic orbital electron populations 1.22110 0.90699 1.03808 1.04153 1.20771 0.96174 0.91909 0.84681 1.22243 1.01007 0.88172 1.06098 1.23166 0.99180 0.99402 0.98538 1.22962 1.03591 1.01987 0.91740 1.45522 1.55734 1.28458 1.08626 1.15744 0.79105 0.82271 0.81649 1.90986 1.47885 1.41802 1.60800 1.45781 1.47871 1.28596 1.07565 1.21553 0.93649 0.90716 0.96292 1.19975 0.85863 0.85555 0.85083 1.90539 1.76113 1.22501 1.55618 1.43394 1.11475 1.15055 1.44466 1.19736 0.85776 1.19814 1.17846 0.87287 1.25245 1.01051 0.97415 0.93519 1.69837 1.36293 1.35798 1.09726 0.85836 0.81961 0.78964 0.77534 1.20182 1.19279 1.21039 1.20767 0.99881 0.89078 0.88955 1.23798 0.74515 0.82071 0.87217 1.90659 1.54364 1.25732 1.67413 1.84507 1.69460 1.41680 1.38825 1.20550 0.77420 0.80122 0.89721 1.90808 1.56855 1.68100 1.16415 0.91219 0.89431 0.90349 0.86337 0.87686 0.88105 0.88163 0.88514 0.72070 0.86996 0.87386 0.91765 0.90306 0.84993 0.74997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.62 37.16 0.28 -1.00 16 2 C 0.16 1.93 1.17 -132.10 -0.16 1.77 16 3 C -0.16 -1.83 5.43 -90.62 -0.49 -2.32 16 4 C -0.17 -1.45 9.68 -26.69 -0.26 -1.70 16 5 C -0.17 -1.33 9.91 -26.69 -0.26 -1.60 16 6 N -0.72 -9.01 5.90 -52.94 -0.31 -9.33 16 7 C 0.71 12.42 8.62 -88.01 -0.76 11.66 16 8 O -0.54 -10.97 17.48 5.33 0.09 -10.87 16 9 N -0.55 -10.33 2.09 -122.02 -0.26 -10.58 16 10 C 0.10 2.05 4.79 -5.19 -0.02 2.03 16 11 C 0.45 11.28 7.51 -10.98 -0.08 11.20 16 12 O -0.57 -16.10 16.06 5.55 0.09 -16.01 16 13 N -0.42 -10.81 2.17 -116.09 -0.25 -11.06 16 14 C -0.30 -8.45 9.35 -14.93 -0.14 -8.59 16 15 H 0.11 3.20 7.37 -52.49 -0.39 2.81 16 16 C 0.03 0.80 4.84 -17.47 -0.08 0.72 16 17 N -0.88 -22.89 9.33 55.50 0.52 -22.37 16 18 Si 0.93 20.56 29.61 -169.99 -5.03 15.53 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 C 0.14 3.01 4.97 -5.19 -0.03 2.98 16 23 C 0.48 10.64 5.91 36.00 0.21 10.85 16 24 O -0.50 -13.02 16.80 -18.75 -0.31 -13.33 16 25 O -0.53 -9.37 13.42 -39.24 -0.53 -9.90 16 26 C 0.54 9.41 6.99 -10.56 -0.07 9.34 16 27 O -0.45 -9.25 17.75 5.60 0.10 -9.15 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.72 6.74 -51.93 -0.35 0.37 16 30 H 0.08 0.47 7.25 -51.93 -0.38 0.09 16 31 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.10 0.76 5.94 -51.93 -0.31 0.45 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.60 7.46 -51.93 -0.39 0.21 16 36 H 0.44 4.07 8.96 -40.82 -0.37 3.70 16 37 H 0.11 1.92 7.13 -51.93 -0.37 1.55 16 38 H 0.11 2.09 7.41 -51.93 -0.38 1.70 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 40 H 0.08 1.34 6.67 -51.93 -0.35 1.00 16 41 H 0.13 2.92 6.37 -51.93 -0.33 2.59 16 42 H 0.39 5.32 9.10 45.56 0.41 5.74 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -38.01 360.00 -6.35 -44.37 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.02 Total: 11.94 kcal Atomic # 6 Polarization: 37.21 SS G_CDS: -1.86 Total: 35.34 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.30 Total: -53.34 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -0.56 Total: -59.26 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.01 -6.35 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736738679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.009 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds