Wall clock time and date at job start Tue Mar 31 2020 22:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.53580 * 2 1 4 4 C 1.53002 * 117.49594 * 54.30206 * 3 2 1 5 5 C 1.52997 * 60.03334 * 252.47406 * 4 3 2 6 6 N 1.47308 * 110.59866 * 122.83143 * 2 1 3 7 7 C 1.34529 * 106.61690 * 118.68324 * 6 2 1 8 8 O 1.21544 * 123.77038 * 180.02562 * 7 6 2 9 9 N 1.33790 * 112.45947 * 359.97438 * 7 6 2 10 10 C 1.46498 * 124.18072 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47065 * 91.52843 * 10 9 7 12 12 O 1.21285 * 120.00080 * 4.95756 * 11 10 9 13 13 N 1.34781 * 119.99950 * 184.94944 * 11 10 9 14 14 C 1.37100 * 119.99909 * 5.01260 * 13 11 10 15 15 H 1.08002 * 120.00010 * 320.63440 * 14 13 11 16 16 C 1.38943 * 120.00346 * 140.64214 * 14 13 11 17 17 N 1.31411 * 120.00621 * 159.02355 * 16 14 13 18 18 Si 1.86804 * 119.99634 * 339.02640 * 16 14 13 19 19 H 1.48503 * 109.46976 * 95.77926 * 18 16 14 20 20 H 1.48503 * 109.47196 * 215.77661 * 18 16 14 21 21 H 1.48493 * 109.47367 * 335.77722 * 18 16 14 22 22 C 1.46495 * 119.99917 * 185.00551 * 13 11 10 23 23 C 1.50703 * 109.46940 * 90.00276 * 22 13 11 24 24 O 1.20821 * 119.99939 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99816 * 179.97438 * 23 22 13 26 26 C 1.35122 * 111.68614 * 359.91620 * 9 7 6 27 27 O 1.21231 * 127.33551 * 180.09693 * 26 9 7 28 28 H 1.09002 * 109.47078 * 59.99581 * 1 2 3 29 29 H 1.08997 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46781 * 299.99941 * 1 2 3 31 31 H 1.08997 * 115.55379 * 199.97149 * 3 2 1 32 32 H 1.08997 * 117.50184 * 359.97438 * 4 3 2 33 33 H 1.08999 * 117.49882 * 144.97505 * 4 3 2 34 34 H 1.08997 * 117.50089 * 107.49861 * 5 4 3 35 35 H 1.09003 * 117.50107 * 252.52475 * 5 4 3 36 36 H 0.96998 * 126.69289 * 298.64058 * 6 2 1 37 37 H 1.08997 * 109.47645 * 211.53203 * 10 9 7 38 38 H 1.09005 * 109.47020 * 331.53361 * 10 9 7 39 39 H 0.96993 * 120.00569 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47068 * 210.00272 * 22 13 11 41 41 H 1.08996 * 109.47369 * 330.00537 * 22 13 11 42 42 H 0.96698 * 116.99733 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5729 2.3721 1.1022 5 6 1.0832 2.5568 -0.3355 6 7 2.0483 -0.7476 1.1586 7 6 2.7628 -1.7751 0.6652 8 8 3.3321 -2.5962 1.3573 9 7 2.7758 -1.7928 -0.6725 10 6 3.4759 -2.7983 -1.4756 11 6 2.5383 -3.9373 -1.7832 12 8 1.3739 -3.8711 -1.4501 13 7 2.9935 -5.0293 -2.4288 14 6 4.3290 -5.1498 -2.7144 15 1 4.8929 -4.2860 -3.0342 16 6 4.9571 -6.3832 -2.5925 17 7 6.0814 -6.6142 -3.2323 18 14 4.2031 -7.7131 -1.5190 19 1 3.3897 -8.6268 -2.3610 20 1 5.2839 -8.4840 -0.8535 21 1 3.3363 -7.0859 -0.4893 22 6 2.0613 -6.0876 -2.8252 23 6 1.5337 -5.8005 -4.2073 24 8 1.8993 -4.8135 -4.8005 25 8 0.6584 -6.6420 -4.7798 26 6 2.0626 -0.7696 -1.1924 27 8 1.8857 -0.5177 -2.3650 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.0971 1.5489 -0.3359 32 1 0.8654 1.9695 1.8270 33 1 2.2786 3.1058 1.4917 34 1 0.0536 2.2756 -0.5566 35 1 1.4671 3.4118 -0.8920 36 1 1.9032 -0.5393 2.0948 37 1 3.8168 -2.3466 -2.4071 38 1 4.3342 -3.1747 -0.9189 39 1 6.5200 -7.4751 -3.1469 40 1 2.5794 -7.0467 -2.8259 41 1 1.2312 -6.1237 -2.1197 42 1 0.3479 -6.4156 -5.6671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736738680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:03 Heat of formation + Delta-G solvation = -111.873871 kcal Electronic energy + Delta-G solvation = -30995.109007 eV Core-core repulsion = 26557.514912 eV Total energy + Delta-G solvation = -4437.594095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38618 -39.89410 -38.76744 -38.43787 -37.82906 -35.70765 -35.56974 -34.96290 -34.10608 -32.13683 -30.22979 -29.46563 -27.27376 -25.59517 -24.88530 -22.99634 -22.74613 -21.96372 -20.82303 -19.93175 -19.24535 -17.91946 -17.63888 -17.41216 -17.05144 -16.81367 -16.24240 -15.81527 -15.51693 -15.43324 -15.32594 -14.95093 -14.71180 -14.58933 -14.10234 -13.91260 -13.68000 -13.45942 -12.83078 -12.80999 -12.65821 -12.58326 -12.43965 -11.96117 -11.78709 -11.56182 -11.52393 -11.10225 -11.03843 -11.03515 -10.78786 -10.62067 -10.34851 -10.18454 -10.00595 -9.97781 -9.85493 -9.44947 -9.34063 -8.74818 -8.08711 -6.62817 -4.28604 1.83904 2.32552 2.82533 2.92908 3.07127 3.09564 3.21040 3.22100 3.28436 3.46481 3.71661 3.97932 4.05701 4.23315 4.27381 4.47684 4.60452 4.75654 4.81501 5.02000 5.21212 5.33525 5.41567 5.48364 5.54057 5.54741 5.67330 5.72965 5.78247 5.79710 5.82268 5.90302 5.94034 5.96235 6.06546 6.87270 6.98706 7.04191 7.28940 7.59866 7.84430 8.04645 8.33556 8.47392 8.71073 9.05993 9.36059 10.46866 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003878 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.956442 B = 7218.280580 C = 8029.327650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 C -0.157 4.157 4 C -0.166 4.166 5 C -0.164 4.164 6 N -0.720 5.720 7 C 0.709 3.291 8 O -0.538 6.538 9 N -0.559 5.559 10 C 0.119 3.881 11 C 0.487 3.513 12 O -0.584 6.584 13 N -0.444 5.444 14 C -0.354 4.354 15 H 0.110 0.890 16 C 0.072 3.928 17 N -0.846 5.846 18 Si 0.862 3.138 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.253 1.253 22 C 0.109 3.891 23 C 0.464 3.536 24 O -0.495 6.495 25 O -0.526 6.526 26 C 0.539 3.461 27 O -0.457 6.457 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.435 0.565 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.279 0.721 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 12.545 6.750 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.063 3.937 3 C -0.176 4.176 4 C -0.203 4.203 5 C -0.202 4.202 6 N -0.385 5.385 7 C 0.410 3.590 8 O -0.411 6.411 9 N -0.304 5.304 10 C -0.005 4.005 11 C 0.276 3.724 12 O -0.468 6.468 13 N -0.165 5.165 14 C -0.481 4.481 15 H 0.127 0.873 16 C -0.137 4.137 17 N -0.479 5.479 18 Si 0.687 3.313 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.177 1.177 22 C -0.016 4.016 23 C 0.304 3.696 24 O -0.381 6.381 25 O -0.338 6.338 26 C 0.324 3.676 27 O -0.325 6.325 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.279 0.721 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.784 12.229 6.724 16.490 hybrid contribution -0.290 -0.769 0.044 0.823 sum -9.074 11.460 6.768 16.108 Atomic orbital electron populations 1.22096 0.90587 1.04401 1.03776 1.20769 0.96620 0.91395 0.84868 1.22236 1.00300 0.88477 1.06608 1.22967 1.03620 1.01716 0.92033 1.23161 0.99725 0.99176 0.98111 1.45532 1.55303 1.29046 1.08580 1.15786 0.79543 0.81933 0.81766 1.91015 1.48323 1.41004 1.60760 1.46068 1.49059 1.27613 1.07617 1.21375 0.94923 0.86984 0.97196 1.20408 0.88360 0.84860 0.78789 1.90560 1.18777 1.81486 1.55944 1.43241 1.07105 1.16959 1.49219 1.19100 0.81658 0.98956 1.48352 0.87298 1.25341 0.95533 0.97745 0.95130 1.69749 1.17937 1.24435 1.35780 0.87136 0.79909 0.81869 0.82339 1.19626 1.20414 1.17696 1.21271 0.95974 0.94438 0.89905 1.24390 0.75320 0.80340 0.89565 1.90680 1.55679 1.27908 1.63789 1.84563 1.58738 1.54104 1.36394 1.20599 0.77028 0.80306 0.89626 1.90785 1.55843 1.69316 1.16577 0.89655 0.90642 0.90530 0.86817 0.88388 0.88200 0.87589 0.88116 0.72117 0.86216 0.85101 0.91081 0.87579 0.86847 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 7.64 37.16 0.28 -1.25 16 2 C 0.15 1.86 1.18 -132.09 -0.16 1.70 16 3 C -0.16 -1.48 5.41 -90.58 -0.49 -1.97 16 4 C -0.17 -1.08 9.89 -26.73 -0.26 -1.35 16 5 C -0.16 -1.21 9.70 -26.69 -0.26 -1.47 16 6 N -0.72 -8.91 5.90 -52.94 -0.31 -9.23 16 7 C 0.71 12.40 8.63 -88.02 -0.76 11.65 16 8 O -0.54 -11.18 17.46 5.33 0.09 -11.08 16 9 N -0.56 -10.33 2.11 -121.92 -0.26 -10.59 16 10 C 0.12 2.45 4.84 -5.19 -0.03 2.42 16 11 C 0.49 11.62 7.69 -10.98 -0.08 11.53 16 12 O -0.58 -14.67 15.98 5.55 0.09 -14.58 16 13 N -0.44 -10.79 1.63 -116.10 -0.19 -10.98 16 14 C -0.35 -9.08 8.94 -14.93 -0.13 -9.21 16 15 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 16 C 0.07 1.84 5.32 -17.47 -0.09 1.75 16 17 N -0.85 -22.64 13.96 55.50 0.77 -21.87 16 18 Si 0.86 19.39 25.02 -169.99 -4.25 15.14 16 19 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.25 -5.81 7.11 56.52 0.40 -5.41 16 22 C 0.11 2.43 4.84 -5.19 -0.03 2.41 16 23 C 0.46 9.97 8.40 36.01 0.30 10.27 16 24 O -0.50 -12.16 17.19 -18.75 -0.32 -12.48 16 25 O -0.53 -8.83 13.42 -39.27 -0.53 -9.35 16 26 C 0.54 9.15 6.99 -10.40 -0.07 9.08 16 27 O -0.46 -8.91 17.80 5.60 0.10 -8.81 16 28 H 0.08 0.83 6.81 -51.93 -0.35 0.48 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.54 7.05 -51.92 -0.37 0.18 16 31 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 0.53 7.31 -51.93 -0.38 0.15 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.73 5.99 -51.93 -0.31 0.42 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.43 4.03 8.96 -40.82 -0.37 3.67 16 37 H 0.12 2.36 7.92 -51.93 -0.41 1.95 16 38 H 0.13 2.64 7.56 -51.93 -0.39 2.24 16 39 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.11 2.33 3.42 -51.93 -0.18 2.15 16 41 H 0.11 2.37 7.36 -51.93 -0.38 1.99 16 42 H 0.40 4.73 9.10 45.56 0.41 5.14 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -35.21 360.65 -5.11 -40.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.96 Total: 12.51 kcal Atomic # 6 Polarization: 37.34 SS G_CDS: -1.78 Total: 35.56 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.02 Total: -52.66 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.57 Total: -56.31 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.25 Total: 15.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.21 -5.11 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736738680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.554 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds