Wall clock time and date at job start Tue Mar 31 2020 22:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.53580 * 2 1 4 4 C 1.53002 * 117.49594 * 54.30206 * 3 2 1 5 5 C 1.52997 * 60.03334 * 252.47406 * 4 3 2 6 6 N 1.47308 * 110.59866 * 122.83143 * 2 1 3 7 7 C 1.34529 * 106.61690 * 118.68324 * 6 2 1 8 8 O 1.21544 * 123.77038 * 180.02562 * 7 6 2 9 9 N 1.33790 * 112.45947 * 359.97438 * 7 6 2 10 10 C 1.46498 * 124.18072 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47065 * 91.52843 * 10 9 7 12 12 O 1.21285 * 120.00080 * 4.95756 * 11 10 9 13 13 N 1.34781 * 119.99950 * 184.94944 * 11 10 9 14 14 C 1.37100 * 119.99909 * 5.01260 * 13 11 10 15 15 H 1.08002 * 120.00010 * 320.63440 * 14 13 11 16 16 C 1.38943 * 120.00346 * 140.64214 * 14 13 11 17 17 N 1.31411 * 120.00621 * 159.02355 * 16 14 13 18 18 Si 1.86804 * 119.99634 * 339.02640 * 16 14 13 19 19 H 1.48503 * 109.46976 * 95.77926 * 18 16 14 20 20 H 1.48503 * 109.47196 * 215.77661 * 18 16 14 21 21 H 1.48493 * 109.47367 * 335.77722 * 18 16 14 22 22 C 1.46495 * 119.99917 * 185.00551 * 13 11 10 23 23 C 1.50703 * 109.46940 * 90.00276 * 22 13 11 24 24 O 1.20821 * 119.99939 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99816 * 179.97438 * 23 22 13 26 26 C 1.35122 * 111.68614 * 359.91620 * 9 7 6 27 27 O 1.21231 * 127.33551 * 180.09693 * 26 9 7 28 28 H 1.09002 * 109.47078 * 59.99581 * 1 2 3 29 29 H 1.08997 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46781 * 299.99941 * 1 2 3 31 31 H 1.08997 * 115.55379 * 199.97149 * 3 2 1 32 32 H 1.08997 * 117.50184 * 359.97438 * 4 3 2 33 33 H 1.08999 * 117.49882 * 144.97505 * 4 3 2 34 34 H 1.08997 * 117.50089 * 107.49861 * 5 4 3 35 35 H 1.09003 * 117.50107 * 252.52475 * 5 4 3 36 36 H 0.96998 * 126.69289 * 298.64058 * 6 2 1 37 37 H 1.08997 * 109.47645 * 211.53203 * 10 9 7 38 38 H 1.09005 * 109.47020 * 331.53361 * 10 9 7 39 39 H 0.96993 * 120.00569 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.47068 * 210.00272 * 22 13 11 41 41 H 1.08996 * 109.47369 * 330.00537 * 22 13 11 42 42 H 0.96698 * 116.99733 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5729 2.3721 1.1022 5 6 1.0832 2.5568 -0.3355 6 7 2.0483 -0.7476 1.1586 7 6 2.7628 -1.7751 0.6652 8 8 3.3321 -2.5962 1.3573 9 7 2.7758 -1.7928 -0.6725 10 6 3.4759 -2.7983 -1.4756 11 6 2.5383 -3.9373 -1.7832 12 8 1.3739 -3.8711 -1.4501 13 7 2.9935 -5.0293 -2.4288 14 6 4.3290 -5.1498 -2.7144 15 1 4.8929 -4.2860 -3.0342 16 6 4.9571 -6.3832 -2.5925 17 7 6.0814 -6.6142 -3.2323 18 14 4.2031 -7.7131 -1.5190 19 1 3.3897 -8.6268 -2.3610 20 1 5.2839 -8.4840 -0.8535 21 1 3.3363 -7.0859 -0.4893 22 6 2.0613 -6.0876 -2.8252 23 6 1.5337 -5.8005 -4.2073 24 8 1.8993 -4.8135 -4.8005 25 8 0.6584 -6.6420 -4.7798 26 6 2.0626 -0.7696 -1.1924 27 8 1.8857 -0.5177 -2.3650 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.0971 1.5489 -0.3359 32 1 0.8654 1.9695 1.8270 33 1 2.2786 3.1058 1.4917 34 1 0.0536 2.2756 -0.5566 35 1 1.4671 3.4118 -0.8920 36 1 1.9032 -0.5393 2.0948 37 1 3.8168 -2.3466 -2.4071 38 1 4.3342 -3.1747 -0.9189 39 1 6.5200 -7.4751 -3.1469 40 1 2.5794 -7.0467 -2.8259 41 1 1.2312 -6.1237 -2.1197 42 1 0.3479 -6.4156 -5.6671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736738680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:02 Heat of formation + Delta-G solvation = -139.138407 kcal Electronic energy + Delta-G solvation = -30996.291286 eV Core-core repulsion = 26557.514912 eV Total energy + Delta-G solvation = -4438.776374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.68307 -41.63210 -40.39164 -39.84084 -38.88560 -37.35519 -36.96410 -36.75913 -35.38045 -34.11823 -31.26939 -31.07072 -28.92753 -26.96778 -26.46482 -24.22239 -23.64424 -23.20575 -22.20951 -21.08638 -20.95248 -19.45254 -19.30111 -18.95035 -18.70644 -17.87228 -17.73851 -17.40108 -17.19459 -16.69152 -16.64833 -16.52685 -16.32839 -15.89347 -15.73197 -15.45302 -15.07953 -14.69313 -14.47525 -14.34405 -14.28056 -13.63765 -13.59714 -13.30500 -13.25830 -12.93910 -12.81636 -12.67342 -12.45093 -12.22546 -12.07496 -12.02018 -11.80840 -11.66064 -11.63321 -11.24222 -11.17342 -10.99989 -10.65617 -10.45602 -10.02307 -8.60950 -6.30769 0.50781 0.97852 1.09775 1.14734 1.27393 1.42419 1.45499 1.79128 1.99457 2.07151 2.11602 2.50504 2.63731 2.87091 3.10153 3.42084 3.61320 3.75502 3.86820 3.92888 3.96092 4.11410 4.16297 4.21700 4.28693 4.31580 4.34560 4.46931 4.64350 4.70641 4.89651 4.96022 5.04996 5.15578 5.24322 5.32139 5.52446 5.76828 5.89714 5.97592 6.02450 6.28365 6.74392 6.93089 7.03822 7.11445 7.43079 8.52428 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003878 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.956442 B = 7218.280580 C = 8029.327650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 C -0.183 4.183 4 C -0.139 4.139 5 C -0.161 4.161 6 N -0.691 5.691 7 C 0.703 3.297 8 O -0.578 6.578 9 N -0.568 5.568 10 C 0.123 3.877 11 C 0.478 3.522 12 O -0.600 6.600 13 N -0.451 5.451 14 C -0.359 4.359 15 H 0.086 0.914 16 C 0.037 3.963 17 N -0.881 5.881 18 Si 0.912 3.088 19 H -0.243 1.243 20 H -0.273 1.273 21 H -0.261 1.261 22 C 0.099 3.901 23 C 0.472 3.528 24 O -0.534 6.534 25 O -0.506 6.506 26 C 0.526 3.474 27 O -0.491 6.491 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.453 0.547 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.285 0.715 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 13.335 8.219 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 C -0.203 4.203 4 C -0.176 4.176 5 C -0.198 4.198 6 N -0.357 5.357 7 C 0.404 3.596 8 O -0.454 6.454 9 N -0.313 5.313 10 C -0.002 4.002 11 C 0.268 3.732 12 O -0.485 6.485 13 N -0.173 5.173 14 C -0.486 4.486 15 H 0.103 0.897 16 C -0.169 4.169 17 N -0.516 5.516 18 Si 0.735 3.265 19 H -0.168 1.168 20 H -0.198 1.198 21 H -0.186 1.186 22 C -0.026 4.026 23 C 0.313 3.687 24 O -0.423 6.423 25 O -0.319 6.319 26 C 0.314 3.686 27 O -0.361 6.361 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.300 0.700 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.905 13.038 8.196 18.871 hybrid contribution 0.301 -0.972 -0.498 1.133 sum -10.604 12.066 7.698 17.813 Atomic orbital electron populations 1.22167 0.88484 1.03695 1.06201 1.20854 0.97766 0.91915 0.81725 1.22142 1.00366 0.87156 1.10587 1.23137 1.03159 0.99727 0.91603 1.23309 0.99440 0.97911 0.99119 1.45415 1.53339 1.27206 1.09705 1.15960 0.79855 0.82619 0.81210 1.90980 1.50239 1.42828 1.61334 1.46211 1.49329 1.27553 1.08205 1.21166 0.94561 0.86881 0.97575 1.20912 0.88617 0.85368 0.78325 1.90521 1.19435 1.81935 1.56658 1.43289 1.06980 1.17594 1.49426 1.18958 0.82537 0.98633 1.48423 0.89652 1.25882 0.95890 0.99522 0.95652 1.69806 1.19283 1.25543 1.36987 0.86334 0.79536 0.79864 0.80759 1.16822 1.19834 1.18553 1.21389 0.96171 0.93973 0.91032 1.24094 0.75381 0.80016 0.89228 1.90677 1.57321 1.29622 1.64660 1.84474 1.57060 1.52285 1.38120 1.21582 0.76220 0.80045 0.90711 1.90749 1.56956 1.70090 1.18337 0.88976 0.92910 0.86349 0.88013 0.86434 0.86871 0.86744 0.87460 0.69963 0.86344 0.85389 0.90449 0.87013 0.85519 0.71209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 7.64 71.98 0.55 -2.10 16 2 C 0.17 3.80 1.18 2.98 0.00 3.80 16 3 C -0.18 -3.07 5.41 -10.77 -0.06 -3.13 16 4 C -0.14 -1.24 9.89 30.59 0.30 -0.94 16 5 C -0.16 -1.86 9.70 30.62 0.30 -1.56 16 6 N -0.69 -16.17 5.90 -439.81 -2.60 -18.77 16 7 C 0.70 24.86 8.63 179.44 1.55 26.41 16 8 O -0.58 -24.49 17.46 -3.85 -0.07 -24.56 16 9 N -0.57 -21.72 2.11 -776.70 -1.64 -23.36 16 10 C 0.12 5.34 4.84 85.63 0.41 5.75 16 11 C 0.48 23.52 7.69 87.66 0.67 24.19 16 12 O -0.60 -30.71 15.98 -3.05 -0.05 -30.76 16 13 N -0.45 -22.39 1.63 -639.61 -1.04 -23.43 16 14 C -0.36 -18.98 8.94 84.04 0.75 -18.23 16 15 H 0.09 4.81 7.43 -2.91 -0.02 4.79 16 16 C 0.04 1.93 5.32 84.92 0.45 2.38 16 17 N -0.88 -47.92 13.96 21.66 0.30 -47.61 16 18 Si 0.91 39.48 25.02 68.60 1.72 41.20 16 19 H -0.24 -9.46 6.71 99.48 0.67 -8.79 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.10 4.35 4.84 85.64 0.41 4.76 16 23 C 0.47 19.93 8.40 71.24 0.60 20.52 16 24 O -0.53 -26.45 17.19 21.98 0.38 -26.07 16 25 O -0.51 -15.80 13.42 -51.46 -0.69 -16.49 16 26 C 0.53 18.22 6.99 87.88 0.61 18.83 16 27 O -0.49 -19.80 17.80 -2.88 -0.05 -19.85 16 28 H 0.09 1.58 6.81 -2.39 -0.02 1.56 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.14 7.05 -2.38 -0.02 1.12 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.12 0.63 7.31 -2.39 -0.02 0.61 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 1.15 5.99 -2.39 -0.01 1.14 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.45 7.24 8.96 -92.71 -0.83 6.41 16 37 H 0.12 5.06 7.92 -2.39 -0.02 5.04 16 38 H 0.13 5.53 7.56 -2.38 -0.02 5.51 16 39 H 0.29 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.11 4.74 3.42 -2.38 -0.01 4.73 16 41 H 0.13 5.18 7.36 -2.39 -0.02 5.17 16 42 H 0.43 8.92 9.10 -74.06 -0.67 8.25 16 Total: -1.00 -79.09 360.65 2.40 -76.69 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.42 Total: 32.31 kcal Atomic # 6 Polarization: 74.13 SS G_CDS: 6.56 Total: 80.69 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.98 Total: -113.17 kcal Atomic # 8 Polarization: -117.24 SS G_CDS: -0.48 Total: -117.73 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.72 Total: 41.20 kcal Total: -79.09 2.40 -76.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736738680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.445 kcal (2) G-P(sol) polarization free energy of solvation -79.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds