Wall clock time and date at job start Tue Mar 31 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40425 * 107.86821 * 0.42341 * 12 11 10 14 14 N 1.40081 * 125.97721 * 179.73417 * 13 12 11 15 15 C 1.34766 * 120.00216 * 359.97438 * 14 13 12 16 16 O 1.21574 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.47837 * 120.00458 * 179.97438 * 15 14 13 18 18 C 1.39665 * 120.08299 * 359.71956 * 17 15 14 19 19 C 1.38012 * 120.08647 * 179.78892 * 18 17 15 20 20 C 1.38171 * 120.27341 * 0.47003 * 19 18 17 21 21 C 1.39393 * 120.17121 * 359.78671 * 20 19 18 22 22 C 1.48478 * 120.04111 * 180.02562 * 21 20 19 23 23 N 1.34042 * 126.67088 * 179.66675 * 22 21 20 24 24 N 1.28991 * 107.26798 * 179.83244 * 23 22 21 25 25 N 1.28726 * 108.93945 * 0.42779 * 24 23 22 26 26 H 0.97004 * 125.33884 * 179.74113 * 25 24 23 27 27 N 1.28876 * 109.32047 * 359.72868 * 25 24 23 28 28 C 1.39056 * 119.91287 * 359.97438 * 21 20 19 29 29 N 1.31239 * 108.04414 * 359.74232 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06412 * 359.97235 * 11 10 9 34 34 H 1.08003 * 126.06588 * 180.14552 * 12 11 10 35 35 H 0.97005 * 119.99840 * 179.97438 * 14 13 12 36 36 H 1.07994 * 119.95754 * 0.02562 * 18 17 15 37 37 H 1.08001 * 119.86355 * 180.21116 * 19 18 17 38 38 H 1.07995 * 119.91533 * 179.76821 * 20 19 18 39 39 H 1.07994 * 120.14022 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9598 -5.4621 -1.3039 15 6 5.5262 -6.6028 -0.8632 16 8 5.0890 -7.1553 0.1276 17 6 6.6792 -7.1823 -1.5844 18 6 7.1794 -6.5523 -2.7261 19 6 8.2585 -7.0909 -3.3970 20 6 8.8439 -8.2599 -2.9498 21 6 8.3504 -8.9008 -1.8146 22 6 8.9820 -10.1565 -1.3363 23 7 8.6222 -10.8755 -0.2637 24 7 9.4166 -11.8896 -0.1986 25 7 10.2549 -11.8271 -1.1734 26 1 10.9609 -12.4689 -1.3484 27 7 10.0089 -10.7781 -1.8806 28 6 7.2665 -8.3620 -1.1301 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5912 -4.7502 1.7306 34 1 3.5579 -6.3464 1.0450 35 1 5.3089 -5.0211 -2.0942 36 1 6.7234 -5.6404 -3.0823 37 1 8.6445 -6.5988 -4.2775 38 1 9.6857 -8.6782 -3.4814 39 1 6.8809 -8.8557 -0.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737694810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:59 Heat of formation + Delta-G solvation = 202.709770 kcal Electronic energy + Delta-G solvation = -26574.396672 eV Core-core repulsion = 22522.338369 eV Total energy + Delta-G solvation = -4052.058303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.86499 -40.92926 -40.03513 -38.54487 -35.03725 -34.79329 -34.09647 -33.64738 -31.76654 -31.20200 -30.51475 -29.39541 -26.44843 -25.38519 -24.90885 -24.25354 -22.89109 -22.29891 -21.40198 -20.46997 -19.83857 -19.40975 -18.03379 -17.54805 -17.19586 -16.63536 -16.42509 -16.05698 -15.36417 -15.13439 -14.97818 -14.45675 -14.19322 -14.04760 -13.98147 -13.78563 -13.33390 -13.16073 -12.77763 -12.46631 -12.34263 -12.19721 -11.83315 -11.78190 -11.73408 -11.47735 -11.38566 -11.16949 -10.82405 -10.50372 -10.16510 -10.13236 -9.72476 -9.44228 -9.20171 -9.00802 -8.58623 -8.22823 -7.54540 -6.58490 -4.32641 0.16208 0.58077 0.80170 1.80848 1.82473 2.43623 2.61264 2.84869 3.22425 3.37574 3.38207 3.39172 3.57968 3.68273 3.76270 3.81701 4.35732 4.40938 4.43845 4.56232 4.72201 4.88317 4.95542 5.08879 5.14952 5.21100 5.45050 5.51339 5.69207 5.82186 5.85027 5.91078 5.95908 6.14896 6.29654 6.39945 6.50248 6.58703 6.74281 7.28862 7.44548 7.68760 7.73138 7.81821 8.12546 8.33476 8.51676 8.60991 9.35541 10.79066 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.001898 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.421478 B =14749.550534 C =15454.746195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.624 5.624 15 C 0.565 3.435 16 O -0.508 6.508 17 C -0.127 4.127 18 C -0.064 4.064 19 C -0.126 4.126 20 C -0.055 4.055 21 C -0.028 4.028 22 C 0.221 3.779 23 N -0.262 5.262 24 N -0.046 5.046 25 N -0.228 5.228 26 H 0.476 0.524 27 N -0.294 5.294 28 C -0.014 4.014 29 N -0.300 5.300 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.990 -21.350 -6.937 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.272 5.272 15 C 0.351 3.649 16 O -0.382 6.382 17 C -0.130 4.130 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.076 4.076 21 C -0.032 4.032 22 C -0.059 4.059 23 N -0.135 5.135 24 N -0.041 5.041 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.146 5.146 28 C -0.035 4.035 29 N -0.131 5.131 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 20.371 -19.564 -6.621 29.009 hybrid contribution 0.837 -2.150 -0.268 2.323 sum 21.208 -21.714 -6.889 31.124 Atomic orbital electron populations 1.70852 1.06772 1.30435 1.45915 1.25925 0.96319 1.02811 0.93145 0.83418 0.74805 0.74560 0.76838 1.20534 1.21235 1.21137 1.22098 0.95379 0.90421 1.56724 0.91828 1.19775 0.86309 0.82810 0.98038 1.48793 1.23301 1.19520 1.18170 1.22574 1.00462 0.90100 0.96695 1.21555 1.02120 1.06314 1.01473 1.19042 0.91436 0.94292 0.94719 1.42277 1.29948 1.24740 1.30238 1.18041 0.82674 0.79883 0.84297 1.90744 1.62276 1.60084 1.25089 1.19695 0.98118 0.97468 0.97745 1.21599 0.95001 0.98778 0.93002 1.21055 0.96395 0.96015 1.00892 1.21376 0.98431 0.94105 0.93659 1.17087 0.97467 0.91006 0.97615 1.23585 0.92686 0.97855 0.91746 1.76174 1.19404 1.00704 1.17223 1.78968 0.98976 1.16982 1.09220 1.47743 1.25236 1.18036 1.16335 0.66970 1.74892 1.18312 0.99785 1.21584 1.21271 0.91475 0.92585 0.98183 1.77351 1.03532 1.16131 1.16112 0.92270 0.93571 0.94718 0.81408 0.82001 0.75318 0.84656 0.84205 0.84389 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.65 55.43 0.76 -25.45 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.77 29.90 -169.99 -5.08 19.69 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.61 -17.00 9.24 -34.44 -0.32 -17.32 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.26 5.57 -5.19 -0.03 6.23 16 10 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 12 C -0.28 -5.60 9.60 -39.83 -0.38 -5.98 16 13 C 0.26 5.14 8.11 -154.44 -1.25 3.89 16 14 N -0.62 -9.50 5.40 -11.99 -0.06 -9.56 16 15 C 0.56 8.19 7.74 -12.34 -0.10 8.10 16 16 O -0.51 -8.88 13.47 5.30 0.07 -8.81 16 17 C -0.13 -1.38 5.87 -105.01 -0.62 -1.99 16 18 C -0.06 -0.51 9.54 -39.13 -0.37 -0.88 16 19 C -0.13 -0.78 10.02 -39.69 -0.40 -1.18 16 20 C -0.06 -0.39 9.69 -39.18 -0.38 -0.77 16 21 C -0.03 -0.26 5.87 -104.94 -0.62 -0.88 16 22 C 0.22 2.16 7.93 -156.31 -1.24 0.92 16 23 N -0.26 -2.91 12.23 32.16 0.39 -2.52 16 24 N -0.05 -0.41 13.47 60.35 0.81 0.40 16 25 N -0.23 -1.28 7.90 60.35 0.48 -0.80 16 26 H 0.48 0.29 8.96 -340.37 -3.05 -2.76 16 27 N -0.29 -2.28 12.07 32.17 0.39 -1.89 16 28 C -0.01 -0.15 9.25 -38.85 -0.36 -0.51 16 29 N -0.30 -6.87 12.42 31.43 0.39 -6.48 16 30 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 34 H 0.16 3.09 5.91 -52.48 -0.31 2.78 16 35 H 0.41 4.93 6.85 -40.82 -0.28 4.65 16 36 H 0.14 0.82 6.39 -52.49 -0.34 0.48 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.73 7.87 -52.49 -0.41 0.31 16 39 H 0.15 1.81 7.47 -52.49 -0.39 1.42 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -36.28 351.36 -9.10 -45.39 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.96 Total: 1.34 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -6.35 Total: -9.02 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 2.92 Total: -53.87 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.28 -9.10 -45.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737694810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.096 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds