Wall clock time and date at job start Tue Mar 31 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40425 * 107.86821 * 0.42341 * 12 11 10 14 14 N 1.40081 * 125.97721 * 179.73417 * 13 12 11 15 15 C 1.34766 * 120.00216 * 359.97438 * 14 13 12 16 16 O 1.21574 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.47837 * 120.00458 * 179.97438 * 15 14 13 18 18 C 1.39665 * 120.08299 * 359.71956 * 17 15 14 19 19 C 1.38012 * 120.08647 * 179.78892 * 18 17 15 20 20 C 1.38171 * 120.27341 * 0.47003 * 19 18 17 21 21 C 1.39393 * 120.17121 * 359.78671 * 20 19 18 22 22 C 1.48478 * 120.04111 * 180.02562 * 21 20 19 23 23 N 1.34042 * 126.67088 * 179.66675 * 22 21 20 24 24 N 1.28991 * 107.26798 * 179.83244 * 23 22 21 25 25 N 1.28726 * 108.93945 * 0.42779 * 24 23 22 26 26 H 0.97004 * 125.33884 * 179.74113 * 25 24 23 27 27 N 1.28876 * 109.32047 * 359.72868 * 25 24 23 28 28 C 1.39056 * 119.91287 * 359.97438 * 21 20 19 29 29 N 1.31239 * 108.04414 * 359.74232 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06412 * 359.97235 * 11 10 9 34 34 H 1.08003 * 126.06588 * 180.14552 * 12 11 10 35 35 H 0.97005 * 119.99840 * 179.97438 * 14 13 12 36 36 H 1.07994 * 119.95754 * 0.02562 * 18 17 15 37 37 H 1.08001 * 119.86355 * 180.21116 * 19 18 17 38 38 H 1.07995 * 119.91533 * 179.76821 * 20 19 18 39 39 H 1.07994 * 120.14022 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9598 -5.4621 -1.3039 15 6 5.5262 -6.6028 -0.8632 16 8 5.0890 -7.1553 0.1276 17 6 6.6792 -7.1823 -1.5844 18 6 7.1794 -6.5523 -2.7261 19 6 8.2585 -7.0909 -3.3970 20 6 8.8439 -8.2599 -2.9498 21 6 8.3504 -8.9008 -1.8146 22 6 8.9820 -10.1565 -1.3363 23 7 8.6222 -10.8755 -0.2637 24 7 9.4166 -11.8896 -0.1986 25 7 10.2549 -11.8271 -1.1734 26 1 10.9609 -12.4689 -1.3484 27 7 10.0089 -10.7781 -1.8806 28 6 7.2665 -8.3620 -1.1301 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5912 -4.7502 1.7306 34 1 3.5579 -6.3464 1.0450 35 1 5.3089 -5.0211 -2.0942 36 1 6.7234 -5.6404 -3.0823 37 1 8.6445 -6.5988 -4.2775 38 1 9.6857 -8.6782 -3.4814 39 1 6.8809 -8.8557 -0.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737694810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:59 Heat of formation + Delta-G solvation = 177.600763 kcal Electronic energy + Delta-G solvation = -26575.485480 eV Core-core repulsion = 22522.338369 eV Total energy + Delta-G solvation = -4053.147111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.50338 -42.36664 -41.16745 -39.51274 -36.49387 -35.68181 -35.42643 -34.69870 -32.97629 -32.12817 -31.59134 -31.01410 -28.25915 -26.17178 -25.68211 -25.38979 -24.55990 -22.96930 -22.68775 -21.92247 -20.96276 -20.21965 -19.24954 -18.99815 -18.18038 -18.11214 -17.27193 -16.97371 -16.71546 -16.46821 -15.83373 -15.80102 -15.60078 -15.26993 -15.06449 -14.93411 -14.64944 -14.25103 -13.98296 -13.89100 -13.71652 -13.40684 -13.22800 -12.87696 -12.60160 -12.45171 -12.39014 -12.16963 -12.08783 -11.99975 -11.94181 -11.69332 -11.06518 -11.00016 -10.68078 -10.14011 -9.86939 -9.83138 -9.21708 -8.76515 -6.54567 -0.50362 -0.16363 0.14729 0.94403 1.16895 1.22234 1.40638 1.52530 1.56362 1.59126 1.80672 2.16756 2.21063 2.50371 2.59532 2.78420 3.02576 3.10070 3.42290 3.80510 3.89613 3.91305 4.06660 4.11968 4.22840 4.31978 4.43701 4.56335 4.59144 4.70245 4.80340 4.82454 4.90165 5.03671 5.18563 5.26866 5.28597 5.56120 5.59448 5.69827 5.79685 5.92307 6.16549 6.27148 6.42073 6.87538 6.99757 7.07794 7.21136 8.59763 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.001898 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.421478 B =14749.550534 C =15454.746195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.621 4.621 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.268 3.732 14 N -0.617 5.617 15 C 0.566 3.434 16 O -0.543 6.543 17 C -0.142 4.142 18 C -0.058 4.058 19 C -0.111 4.111 20 C -0.041 4.041 21 C -0.037 4.037 22 C 0.208 3.792 23 N -0.300 5.300 24 N -0.058 5.058 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.284 5.284 28 C -0.026 4.026 29 N -0.340 5.340 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.202 0.798 34 H 0.169 0.831 35 H 0.425 0.575 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.661 -21.603 -8.570 33.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.941 3.059 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.659 4.659 8 H 0.065 0.935 9 C 0.139 3.861 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.013 3.987 14 N -0.267 5.267 15 C 0.355 3.645 16 O -0.420 6.420 17 C -0.146 4.146 18 C -0.077 4.077 19 C -0.129 4.129 20 C -0.061 4.061 21 C -0.040 4.040 22 C -0.072 4.072 23 N -0.172 5.172 24 N -0.053 5.053 25 N -0.049 5.049 26 H 0.355 0.645 27 N -0.137 5.137 28 C -0.048 4.048 29 N -0.171 5.171 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.219 0.781 34 H 0.186 0.814 35 H 0.265 0.735 36 H 0.173 0.827 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 23.075 -19.870 -8.267 31.553 hybrid contribution 0.172 -2.291 0.182 2.305 sum 23.247 -22.161 -8.085 33.120 Atomic orbital electron populations 1.70948 1.07466 1.30171 1.47339 1.27284 0.96440 1.06091 0.92088 0.82876 0.74130 0.71066 0.77840 1.20094 1.19733 1.19868 1.22283 0.94722 0.92056 1.56844 0.93541 1.19445 0.86416 0.82770 0.97439 1.48584 1.24011 1.20126 1.19635 1.23171 1.00571 0.88765 0.96673 1.21755 1.02271 1.06547 1.01729 1.19376 0.91617 0.93179 0.94512 1.42367 1.28780 1.24989 1.30529 1.18685 0.82948 0.78984 0.83842 1.90711 1.63520 1.60920 1.26836 1.19388 0.97674 0.98226 0.99271 1.21860 0.95193 0.99059 0.91603 1.21471 0.94929 0.95238 1.01248 1.21717 0.98347 0.93766 0.92268 1.17171 0.97234 0.91218 0.98421 1.23732 0.93332 0.98304 0.91812 1.76161 1.20779 1.01749 1.18546 1.78908 0.99500 1.16755 1.10102 1.47822 1.24614 1.17538 1.14884 0.64488 1.74847 1.17534 0.99963 1.21372 1.21108 0.92566 0.92932 0.98146 1.77267 1.04639 1.17916 1.17263 0.92986 0.92847 0.96399 0.78129 0.81406 0.73532 0.82688 0.80337 0.81980 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 13.65 21.45 0.29 -53.57 16 2 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 3 Si 1.12 49.39 29.90 68.60 2.05 51.44 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.62 -35.21 9.24 25.60 0.24 -34.98 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 9 C 0.26 13.30 5.57 85.64 0.48 13.77 16 10 N -0.34 -16.11 3.67 -351.84 -1.29 -17.40 16 11 C 0.06 2.25 11.43 83.52 0.95 3.20 16 12 C -0.29 -11.61 9.60 22.11 0.21 -11.40 16 13 C 0.27 10.72 8.11 133.35 1.08 11.80 16 14 N -0.62 -18.57 5.40 -310.13 -1.67 -20.25 16 15 C 0.57 16.52 7.74 86.79 0.67 17.19 16 16 O -0.54 -19.61 13.47 -3.95 -0.05 -19.66 16 17 C -0.14 -2.99 5.87 -20.12 -0.12 -3.11 16 18 C -0.06 -0.76 9.54 22.56 0.22 -0.54 16 19 C -0.11 -0.93 10.02 22.20 0.22 -0.71 16 20 C -0.04 -0.44 9.69 22.53 0.22 -0.22 16 21 C -0.04 -0.64 5.87 -20.07 -0.12 -0.76 16 22 C 0.21 3.89 7.93 137.39 1.09 4.98 16 23 N -0.30 -6.72 12.23 -52.17 -0.64 -7.35 16 24 N -0.06 -0.99 13.47 37.02 0.50 -0.49 16 25 N -0.20 -1.88 7.90 37.02 0.29 -1.58 16 26 H 0.50 -0.51 8.96 -347.53 -3.12 -3.62 16 27 N -0.28 -3.83 12.07 -52.12 -0.63 -4.46 16 28 C -0.03 -0.57 9.25 22.74 0.21 -0.36 16 29 N -0.34 -15.78 12.42 -54.48 -0.68 -16.46 16 30 H 0.26 15.05 7.22 -92.71 -0.67 14.38 16 31 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 32 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 33 H 0.20 6.32 8.06 -2.91 -0.02 6.30 16 34 H 0.17 6.49 5.91 -2.91 -0.02 6.48 16 35 H 0.43 9.78 6.85 -92.70 -0.63 9.14 16 36 H 0.16 1.37 6.39 -2.91 -0.02 1.35 16 37 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 38 H 0.16 0.98 7.87 -2.91 -0.02 0.96 16 39 H 0.13 3.35 7.47 -2.91 -0.02 3.33 16 Total: -1.00 -80.77 351.36 1.50 -79.26 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -2.49 Total: 12.26 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.82 Total: -1.74 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.82 Total: -121.57 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.44 kcal Total: -80.77 1.50 -79.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737694810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.864 kcal (2) G-P(sol) polarization free energy of solvation -80.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds