Wall clock time and date at job start Tue Mar 31 2020 22:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35234 * 107.87021 * 179.89618 * 11 10 9 13 13 C 1.40430 * 107.86192 * 0.36722 * 12 11 10 14 14 N 1.40076 * 125.97464 * 179.81332 * 13 12 11 15 15 C 1.34779 * 120.00166 * 359.97438 * 14 13 12 16 16 O 1.21587 * 119.99786 * 359.97438 * 15 14 13 17 17 C 1.47706 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.39701 * 120.02770 * 359.72809 * 17 15 14 19 19 C 1.37688 * 119.97085 * 179.69709 * 18 17 15 20 20 C 1.39463 * 120.02338 * 0.57463 * 19 18 17 21 21 C 1.48364 * 119.96724 * 179.74168 * 20 19 18 22 22 N 1.34088 * 126.67827 * 179.97438 * 21 20 19 23 23 N 1.28987 * 107.26289 * 180.02562 * 22 21 20 24 24 N 1.28728 * 108.95309 * 0.02562 * 23 22 21 25 25 H 0.97002 * 125.33307 * 179.97438 * 24 23 22 26 26 N 1.28873 * 109.33164 * 359.72713 * 24 23 22 27 27 C 1.39465 * 120.06027 * 359.72167 * 20 19 18 28 28 C 1.37682 * 120.03021 * 359.97438 * 27 20 19 29 29 N 1.31236 * 108.04826 * 359.77352 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06235 * 0.04082 * 11 10 9 34 34 H 1.07994 * 126.06890 * 180.10551 * 12 11 10 35 35 H 0.96994 * 120.00279 * 179.97438 * 14 13 12 36 36 H 1.07998 * 120.01652 * 359.97306 * 18 17 15 37 37 H 1.07990 * 119.98369 * 180.31624 * 19 18 17 38 38 H 1.08002 * 119.98424 * 180.02562 * 27 20 19 39 39 H 1.07997 * 120.01407 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2634 -5.4434 0.5311 13 6 3.8674 -4.9128 -0.6203 14 7 4.9599 -5.4619 -1.3037 15 6 5.5263 -6.6027 -0.8630 16 8 5.0892 -7.1551 0.1280 17 6 6.6787 -7.1814 -1.5833 18 6 7.1785 -6.5497 -2.7247 19 6 8.2567 -7.0867 -3.3917 20 6 8.8423 -8.2672 -2.9351 21 6 10.0005 -8.8479 -3.6580 22 7 10.6632 -9.9692 -3.3395 23 7 11.5982 -10.1229 -4.2146 24 7 11.5458 -9.1514 -5.0575 25 1 12.1408 -9.0327 -5.8143 26 7 10.5758 -8.3641 -4.7413 27 6 8.3404 -8.9022 -1.7993 28 6 7.2663 -8.3638 -1.1269 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5906 -4.7508 1.7300 34 1 3.5594 -6.3452 1.0464 35 1 5.3089 -5.0211 -2.0941 36 1 6.7222 -5.6381 -3.0813 37 1 8.6464 -6.5958 -4.2711 38 1 8.7951 -9.8161 -1.4465 39 1 6.8776 -8.8559 -0.2477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737696022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:59 Heat of formation + Delta-G solvation = 201.980236 kcal Electronic energy + Delta-G solvation = -26394.761739 eV Core-core repulsion = 22342.671801 eV Total energy + Delta-G solvation = -4052.089938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.93143 -40.95445 -40.04690 -38.57921 -35.01803 -34.88128 -34.11187 -33.70166 -31.68385 -31.30270 -30.54189 -29.42246 -26.61036 -25.56778 -25.16073 -23.40108 -22.89411 -22.61778 -21.42180 -20.53767 -19.85676 -19.53176 -18.08107 -17.61519 -17.21324 -16.83870 -16.62096 -15.76015 -15.34393 -15.17794 -14.88237 -14.41605 -14.19365 -14.09239 -13.87304 -13.78922 -13.36426 -13.24539 -12.97816 -12.48121 -12.44633 -12.27161 -11.86293 -11.84461 -11.77633 -11.40350 -11.39454 -11.17841 -10.83323 -10.52561 -10.19219 -10.16160 -9.75686 -9.47141 -9.19133 -9.01898 -8.59679 -8.25330 -7.57031 -6.59968 -4.34173 -0.04347 0.66331 0.93198 1.65641 1.75440 2.43350 2.60706 2.83142 3.15901 3.35595 3.37216 3.39509 3.55819 3.68562 3.70899 3.73991 4.37253 4.39967 4.43307 4.51096 4.77574 4.84033 4.94316 5.06842 5.13651 5.25102 5.41601 5.56517 5.66906 5.76499 5.86019 5.90470 5.93896 6.12227 6.31433 6.36946 6.47775 6.56046 6.72377 7.26180 7.41587 7.65329 7.66781 7.79716 8.08661 8.32410 8.49502 8.59571 9.34072 10.77692 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.001856 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.310410 B =15082.566936 C =16176.878364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.284 4.284 13 C 0.257 3.743 14 N -0.624 5.624 15 C 0.562 3.438 16 O -0.509 6.509 17 C -0.105 4.105 18 C -0.088 4.088 19 C -0.085 4.085 20 C 0.002 3.998 21 C 0.216 3.784 22 N -0.264 5.264 23 N -0.048 5.048 24 N -0.226 5.226 25 H 0.477 0.523 26 N -0.289 5.289 27 C -0.083 4.083 28 C -0.058 4.058 29 N -0.300 5.300 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.411 0.589 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.673 -18.573 -9.129 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.004 3.996 14 N -0.271 5.271 15 C 0.349 3.651 16 O -0.384 6.384 17 C -0.109 4.109 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.001 4.001 21 C -0.064 4.064 22 N -0.138 5.138 23 N -0.043 5.043 24 N -0.072 5.072 25 H 0.331 0.669 26 N -0.141 5.141 27 C -0.103 4.103 28 C -0.077 4.077 29 N -0.131 5.131 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.474 -16.712 -9.357 28.036 hybrid contribution 0.469 -1.611 -0.354 1.715 sum 20.943 -18.324 -9.711 29.473 Atomic orbital electron populations 1.70823 1.06780 1.30470 1.45959 1.25925 0.96318 1.02819 0.93135 0.83384 0.74684 0.74323 0.76977 1.21197 1.21239 1.20714 1.22128 0.95416 0.90397 1.56690 0.91776 1.19783 0.86308 0.82820 0.98054 1.48800 1.23277 1.19508 1.18154 1.22576 1.00445 0.90107 0.96700 1.21544 1.02118 1.06328 1.01480 1.19051 0.91469 0.94327 0.94727 1.42311 1.29910 1.24720 1.30186 1.18113 0.82779 0.79895 0.84345 1.90734 1.62367 1.60157 1.25126 1.20025 0.96904 0.97225 0.96756 1.21308 0.95721 0.99643 0.93985 1.21080 0.95202 0.94180 1.00032 1.17431 0.91830 0.95595 0.95269 1.23688 0.98611 0.91902 0.92153 1.76122 1.03363 1.15697 1.18571 1.78942 1.16645 1.10762 0.97920 1.47756 1.22045 1.13985 1.23416 0.66876 1.74960 1.02689 1.19927 1.16482 1.21166 0.95616 1.00103 0.93390 1.21229 0.93690 0.93438 0.99335 1.77357 1.03501 1.16133 1.16078 0.92234 0.93561 0.94699 0.81401 0.82028 0.75258 0.84464 0.84128 0.83760 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.65 55.43 0.76 -25.37 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.76 29.90 -169.99 -5.08 19.67 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -16.93 9.24 -34.44 -0.32 -17.25 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.21 5.57 -5.19 -0.03 6.18 16 10 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.50 9.60 -39.83 -0.38 -5.88 16 13 C 0.26 5.06 8.11 -154.45 -1.25 3.81 16 14 N -0.62 -9.35 5.40 -12.03 -0.06 -9.42 16 15 C 0.56 7.87 7.74 -12.39 -0.10 7.77 16 16 O -0.51 -8.51 13.46 5.29 0.07 -8.44 16 17 C -0.10 -1.09 5.88 -104.93 -0.62 -1.71 16 18 C -0.09 -0.72 9.53 -39.24 -0.37 -1.10 16 19 C -0.08 -0.65 9.68 -39.33 -0.38 -1.03 16 20 C 0.00 0.02 5.88 -104.82 -0.62 -0.60 16 21 C 0.22 1.91 7.93 -156.28 -1.24 0.67 16 22 N -0.26 -2.51 12.22 32.15 0.39 -2.12 16 23 N -0.05 -0.37 13.47 60.35 0.81 0.44 16 24 N -0.23 -1.14 7.90 60.35 0.48 -0.67 16 25 H 0.48 0.12 8.96 -340.36 -3.05 -2.93 16 26 N -0.29 -2.14 12.07 32.16 0.39 -1.75 16 27 C -0.08 -0.68 9.68 -39.33 -0.38 -1.06 16 28 C -0.06 -0.54 9.58 -39.24 -0.38 -0.91 16 29 N -0.30 -6.82 12.42 31.43 0.39 -6.43 16 30 H 0.27 7.55 7.22 -40.82 -0.29 7.25 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 32 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 34 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 35 H 0.41 4.92 6.84 -40.82 -0.28 4.65 16 36 H 0.14 0.88 6.39 -52.49 -0.34 0.54 16 37 H 0.14 0.86 7.87 -52.49 -0.41 0.45 16 38 H 0.14 1.01 7.87 -52.49 -0.41 0.59 16 39 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -35.71 351.29 -9.10 -44.81 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.95 Total: 1.22 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -6.35 Total: -9.75 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 2.92 Total: -52.81 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.44 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.71 -9.10 -44.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737696022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.790 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds