Wall clock time and date at job start Tue Mar 31 2020 22:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35234 * 107.87021 * 179.89618 * 11 10 9 13 13 C 1.40430 * 107.86192 * 0.36722 * 12 11 10 14 14 N 1.40076 * 125.97464 * 179.81332 * 13 12 11 15 15 C 1.34779 * 120.00166 * 359.97438 * 14 13 12 16 16 O 1.21587 * 119.99786 * 359.97438 * 15 14 13 17 17 C 1.47706 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.39701 * 120.02770 * 359.72809 * 17 15 14 19 19 C 1.37688 * 119.97085 * 179.69709 * 18 17 15 20 20 C 1.39463 * 120.02338 * 0.57463 * 19 18 17 21 21 C 1.48364 * 119.96724 * 179.74168 * 20 19 18 22 22 N 1.34088 * 126.67827 * 179.97438 * 21 20 19 23 23 N 1.28987 * 107.26289 * 180.02562 * 22 21 20 24 24 N 1.28728 * 108.95309 * 0.02562 * 23 22 21 25 25 H 0.97002 * 125.33307 * 179.97438 * 24 23 22 26 26 N 1.28873 * 109.33164 * 359.72713 * 24 23 22 27 27 C 1.39465 * 120.06027 * 359.72167 * 20 19 18 28 28 C 1.37682 * 120.03021 * 359.97438 * 27 20 19 29 29 N 1.31236 * 108.04826 * 359.77352 * 13 12 11 30 30 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 32 32 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 33 33 H 1.08006 * 126.06235 * 0.04082 * 11 10 9 34 34 H 1.07994 * 126.06890 * 180.10551 * 12 11 10 35 35 H 0.96994 * 120.00279 * 179.97438 * 14 13 12 36 36 H 1.07998 * 120.01652 * 359.97306 * 18 17 15 37 37 H 1.07990 * 119.98369 * 180.31624 * 19 18 17 38 38 H 1.08002 * 119.98424 * 180.02562 * 27 20 19 39 39 H 1.07997 * 120.01407 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2634 -5.4434 0.5311 13 6 3.8674 -4.9128 -0.6203 14 7 4.9599 -5.4619 -1.3037 15 6 5.5263 -6.6027 -0.8630 16 8 5.0892 -7.1551 0.1280 17 6 6.6787 -7.1814 -1.5833 18 6 7.1785 -6.5497 -2.7247 19 6 8.2567 -7.0867 -3.3917 20 6 8.8423 -8.2672 -2.9351 21 6 10.0005 -8.8479 -3.6580 22 7 10.6632 -9.9692 -3.3395 23 7 11.5982 -10.1229 -4.2146 24 7 11.5458 -9.1514 -5.0575 25 1 12.1408 -9.0327 -5.8143 26 7 10.5758 -8.3641 -4.7413 27 6 8.3404 -8.9022 -1.7993 28 6 7.2663 -8.3638 -1.1269 29 7 3.2287 -3.8132 -0.9445 30 1 -0.4850 -0.8400 0.0004 31 1 0.6281 -2.5591 0.8866 32 1 0.6207 -2.5548 -0.8933 33 1 1.5906 -4.7508 1.7300 34 1 3.5594 -6.3452 1.0464 35 1 5.3089 -5.0211 -2.0941 36 1 6.7222 -5.6381 -3.0813 37 1 8.6464 -6.5958 -4.2711 38 1 8.7951 -9.8161 -1.4465 39 1 6.8776 -8.8559 -0.2477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737696022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:58 Heat of formation + Delta-G solvation = 177.897431 kcal Electronic energy + Delta-G solvation = -26395.806048 eV Core-core repulsion = 22342.671801 eV Total energy + Delta-G solvation = -4053.134247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.50465 -42.36247 -41.16639 -39.53206 -36.48832 -35.64958 -35.44065 -34.70797 -32.95331 -32.07680 -31.68204 -31.01441 -28.29921 -26.58726 -25.76525 -25.07567 -23.79005 -23.51570 -22.58340 -21.93607 -21.02512 -20.22205 -19.26316 -19.05783 -18.18033 -18.14181 -17.51035 -17.06818 -16.61185 -16.21444 -15.87516 -15.81690 -15.58205 -15.16684 -15.04543 -14.85181 -14.53713 -14.25436 -13.98125 -13.88378 -13.75901 -13.62584 -13.22682 -13.07337 -12.60068 -12.44602 -12.40172 -12.10215 -12.03265 -11.98180 -11.96890 -11.68864 -11.06927 -11.00030 -10.68049 -10.11422 -9.92452 -9.82013 -9.21025 -8.76849 -6.54957 -0.76926 0.08643 0.29113 0.81212 1.10618 1.24753 1.38384 1.51592 1.59032 1.60219 1.79130 2.17528 2.23218 2.49462 2.56403 2.77645 3.02150 3.08317 3.40740 3.77239 3.86465 3.90627 4.10488 4.14380 4.17996 4.31871 4.42770 4.56099 4.62515 4.69997 4.79654 4.83068 4.94902 5.03749 5.14087 5.22379 5.29686 5.55985 5.57927 5.65410 5.80226 5.92868 6.16067 6.27515 6.42210 6.87565 6.99276 7.06803 7.20668 8.59424 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.001856 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.310410 B =15082.566936 C =16176.878364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.122 2.878 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.621 4.621 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.290 4.290 13 C 0.267 3.733 14 N -0.618 5.618 15 C 0.566 3.434 16 O -0.539 6.539 17 C -0.120 4.120 18 C -0.079 4.079 19 C -0.080 4.080 20 C 0.004 3.996 21 C 0.203 3.797 22 N -0.288 5.288 23 N -0.056 5.056 24 N -0.199 5.199 25 H 0.495 0.505 26 N -0.287 5.287 27 C -0.081 4.081 28 C -0.058 4.058 29 N -0.343 5.343 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.202 0.798 34 H 0.172 0.828 35 H 0.424 0.576 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.656 -18.890 -9.949 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.659 4.659 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.321 4.321 13 C 0.012 3.988 14 N -0.268 5.268 15 C 0.355 3.645 16 O -0.415 6.415 17 C -0.124 4.124 18 C -0.098 4.098 19 C -0.100 4.100 20 C 0.000 4.000 21 C -0.077 4.077 22 N -0.160 5.160 23 N -0.051 5.051 24 N -0.050 5.050 25 H 0.355 0.645 26 N -0.140 5.140 27 C -0.101 4.101 28 C -0.076 4.076 29 N -0.173 5.173 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.219 0.781 34 H 0.189 0.811 35 H 0.263 0.737 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.492 -17.070 -10.201 30.023 hybrid contribution 0.016 -1.690 -0.194 1.701 sum 22.508 -18.761 -10.395 31.091 Atomic orbital electron populations 1.70917 1.07449 1.30218 1.47388 1.27265 0.96445 1.06070 0.92107 0.82846 0.73879 0.70988 0.77992 1.19437 1.20442 1.20116 1.22305 0.94700 0.92087 1.56783 0.93609 1.19442 0.86420 0.82777 0.97445 1.48579 1.23992 1.20152 1.19672 1.23194 1.00603 0.88747 0.96657 1.21763 1.02137 1.06592 1.01603 1.19395 0.91620 0.93198 0.94561 1.42430 1.28814 1.25086 1.30487 1.18686 0.82965 0.78955 0.83916 1.90703 1.63423 1.60816 1.26579 1.19782 0.96475 0.98219 0.97915 1.21469 0.95503 0.99876 0.92909 1.21248 0.94638 0.93792 1.00332 1.17594 0.91609 0.95687 0.95067 1.23747 0.99038 0.92125 0.92745 1.76105 1.04067 1.16348 1.19507 1.78895 1.16520 1.11386 0.98258 1.47830 1.21289 1.12678 1.23160 0.64536 1.74923 1.02956 1.20088 1.16007 1.21224 0.95177 1.00405 0.93277 1.21254 0.93863 0.93111 0.99417 1.77273 1.04684 1.18054 1.17322 0.92927 0.92776 0.96445 0.78083 0.81115 0.73657 0.82699 0.82269 0.82754 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 13.65 21.45 0.29 -53.34 16 2 C -0.02 -1.07 5.46 84.65 0.46 -0.60 16 3 Si 1.12 49.38 29.90 68.60 2.05 51.43 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.62 -35.05 9.24 25.60 0.24 -34.82 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 9 C 0.26 13.18 5.57 85.64 0.48 13.66 16 10 N -0.34 -15.91 3.67 -351.84 -1.29 -17.20 16 11 C 0.06 2.18 11.43 83.52 0.95 3.13 16 12 C -0.29 -11.12 9.60 22.11 0.21 -10.90 16 13 C 0.27 10.45 8.11 133.35 1.08 11.53 16 14 N -0.62 -18.12 5.40 -310.23 -1.67 -19.80 16 15 C 0.57 15.43 7.74 86.75 0.67 16.10 16 16 O -0.54 -17.82 13.46 -3.99 -0.05 -17.87 16 17 C -0.12 -2.34 5.88 -20.07 -0.12 -2.46 16 18 C -0.08 -1.14 9.53 22.49 0.21 -0.92 16 19 C -0.08 -1.03 9.68 22.44 0.22 -0.81 16 20 C 0.00 0.06 5.88 -19.99 -0.12 -0.06 16 21 C 0.20 3.21 7.93 137.33 1.09 4.30 16 22 N -0.29 -5.05 12.22 -52.21 -0.64 -5.69 16 23 N -0.06 -0.77 13.47 37.02 0.50 -0.27 16 24 N -0.20 -1.56 7.90 37.02 0.29 -1.26 16 25 H 0.50 -1.01 8.96 -347.53 -3.12 -4.13 16 26 N -0.29 -3.57 12.07 -52.16 -0.63 -4.20 16 27 C -0.08 -1.21 9.68 22.43 0.22 -0.99 16 28 C -0.06 -1.01 9.58 22.49 0.22 -0.79 16 29 N -0.34 -15.75 12.42 -54.48 -0.68 -16.43 16 30 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 31 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 32 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 33 H 0.20 6.11 8.06 -2.91 -0.02 6.09 16 34 H 0.17 6.24 5.91 -2.91 -0.02 6.23 16 35 H 0.42 9.73 6.84 -92.71 -0.63 9.10 16 36 H 0.16 1.61 6.39 -2.91 -0.02 1.60 16 37 H 0.16 1.46 7.87 -2.92 -0.02 1.44 16 38 H 0.15 1.97 7.87 -2.91 -0.02 1.95 16 39 H 0.15 2.56 7.64 -2.91 -0.02 2.53 16 Total: -1.00 -77.02 351.29 1.50 -75.52 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -2.49 Total: 12.75 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.81 Total: -3.64 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.82 Total: -118.19 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Total: -77.02 1.50 -75.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737696022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.414 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds