Wall clock time and date at job start Tue Mar 31 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38776 * 120.00000 * 180.02562 * 15 14 13 17 17 N 1.32590 * 120.15213 * 359.72335 * 16 15 14 18 18 C 1.32268 * 119.99176 * 179.69806 * 17 16 15 19 19 C 1.38292 * 120.31809 * 0.60520 * 18 17 16 20 20 N 1.32111 * 120.31542 * 359.67831 * 19 18 17 21 21 C 1.32751 * 119.99053 * 0.02562 * 20 19 18 22 22 C 1.48313 * 120.15476 * 179.97438 * 21 20 19 23 23 N 1.34090 * 126.68356 * 180.02562 * 22 21 20 24 24 N 1.28986 * 107.26400 * 180.02562 * 23 22 21 25 25 N 1.28726 * 108.95913 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.33439 * 180.02562 * 25 24 23 27 27 N 1.28873 * 109.33034 * 359.72514 * 25 24 23 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08006 * 119.84059 * 180.29617 * 18 17 16 37 37 H 1.07999 * 119.84173 * 179.69648 * 19 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3815 -8.7893 1.0377 17 7 5.8499 -9.4186 -0.0313 18 6 6.5582 -10.5264 0.1111 19 6 6.8037 -11.0410 1.3710 20 7 6.3382 -10.4273 2.4443 21 6 5.6307 -9.3113 2.3161 22 6 5.1060 -8.6196 3.5185 23 7 4.3804 -7.4922 3.5414 24 7 4.1268 -7.2252 4.7775 25 7 4.6604 -8.1319 5.5193 26 1 4.6155 -8.1625 6.4877 27 7 5.2584 -8.9959 4.7732 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 6.9426 -11.0344 -0.7611 37 1 7.3789 -11.9488 1.4781 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737697826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:47 Heat of formation + Delta-G solvation = 188.156096 kcal Electronic energy + Delta-G solvation = -27376.682726 eV Core-core repulsion = 23323.993328 eV Total energy + Delta-G solvation = -4052.689398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.68017 -41.13776 -39.13600 -37.24955 -35.82295 -34.95116 -34.21434 -32.96061 -32.34066 -31.07374 -30.21624 -28.99624 -26.34416 -25.76480 -24.97924 -24.45534 -22.94430 -22.60575 -22.00898 -20.58608 -19.59305 -18.13467 -17.98596 -17.53674 -17.38091 -16.98240 -16.92787 -15.39811 -15.29100 -14.69940 -14.67701 -14.56416 -14.30960 -14.06722 -13.63992 -13.59037 -13.30722 -13.04448 -12.74180 -12.48383 -12.28813 -11.85104 -11.71240 -11.67850 -11.52101 -11.37483 -11.32208 -11.10557 -10.91596 -10.71928 -10.63962 -10.44853 -10.04379 -9.37515 -9.34634 -8.88055 -8.22815 -7.86213 -7.28325 -6.49679 -4.08135 0.31181 0.94231 1.14739 2.00694 2.03958 2.08833 2.19199 2.97623 3.10573 3.11879 3.17374 3.41531 3.65835 3.77585 3.93300 4.11761 4.43339 4.56599 4.60528 4.98618 5.05376 5.07258 5.17114 5.20548 5.27768 5.38096 5.44520 5.70554 5.81999 5.85388 6.02983 6.15272 6.17111 6.39289 6.64364 6.84935 6.92535 6.95657 7.03486 7.19465 7.32082 7.39686 7.51227 7.76761 7.80613 7.95533 8.05736 8.95963 9.64903 10.68099 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002535 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.867639 B =11043.658395 C =12085.024333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.163 3.837 11 C -0.195 4.195 12 C -0.052 4.052 13 C -0.215 4.215 14 C 0.182 3.818 15 N -0.683 5.683 16 C 0.401 3.599 17 N -0.501 5.501 18 C 0.133 3.867 19 C -0.033 4.033 20 N -0.367 5.367 21 C 0.063 3.937 22 C 0.238 3.762 23 N -0.278 5.278 24 N -0.032 5.032 25 N -0.226 5.226 26 H 0.477 0.523 27 N -0.269 5.269 28 C -0.048 4.048 29 C -0.236 4.236 30 H 0.270 0.730 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.428 0.572 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -19.519 5.438 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.108 3.892 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.216 4.216 14 C 0.059 3.941 15 N -0.319 5.319 16 C 0.156 3.844 17 N -0.225 5.225 18 C -0.032 4.032 19 C -0.197 4.197 20 N -0.081 5.081 21 C -0.088 4.088 22 C -0.043 4.043 23 N -0.152 5.152 24 N -0.027 5.027 25 N -0.073 5.073 26 H 0.332 0.668 27 N -0.121 5.121 28 C -0.067 4.067 29 C -0.255 4.255 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.275 0.725 36 H 0.191 0.809 37 H 0.188 0.812 38 H 0.125 0.875 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.553 -18.632 5.612 22.630 hybrid contribution 0.623 0.590 0.696 1.105 sum 12.177 -18.042 6.308 22.662 Atomic orbital electron populations 1.70046 1.05992 1.27688 1.45736 1.25313 0.95852 0.98905 0.96432 0.85636 0.79173 0.80275 0.78293 1.19043 1.20089 1.20102 1.21404 0.91892 0.80735 1.52750 0.88884 1.83977 1.34499 1.11552 1.77626 1.19428 0.90298 0.88021 0.91446 1.20195 0.99634 0.90274 1.11287 1.20511 0.92746 0.96801 0.96983 1.19165 0.93583 0.93406 1.15453 1.20096 0.98667 0.92693 0.82623 1.46001 1.52193 1.21848 1.11816 1.19209 0.88687 0.87907 0.88580 1.68254 1.14179 1.10240 1.29798 1.23728 0.90448 0.90191 0.98831 1.23251 1.05201 1.02907 0.88373 1.67943 1.02861 1.03795 1.33540 1.17795 1.07105 0.96943 0.86938 1.22900 0.98533 0.92347 0.90526 1.75455 1.15631 1.13553 1.10601 1.78980 1.14470 1.13018 0.96223 1.47826 1.32646 1.13833 1.13006 0.66818 1.75109 1.17956 1.16369 1.02710 1.20619 0.98321 0.91697 0.96041 1.21144 0.93776 0.98926 1.11694 0.91980 0.86386 0.87042 0.91273 0.91327 0.72479 0.80913 0.81187 0.87487 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.82 9.49 30.89 0.29 -10.53 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.17 -4.91 9.76 0.05 0.00 -4.91 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.19 -4.05 9.99 -39.39 -0.39 -4.45 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.21 -3.60 5.25 -104.58 -0.55 -4.15 16 14 C 0.18 2.57 5.83 -5.19 -0.03 2.54 16 15 N -0.68 -9.78 5.63 -61.28 -0.34 -10.12 16 16 C 0.40 5.42 7.49 -154.63 -1.16 4.26 16 17 N -0.50 -6.00 9.73 -12.02 -0.12 -6.12 16 18 C 0.13 1.13 11.21 -17.34 -0.19 0.93 16 19 C -0.03 -0.29 11.20 -17.41 -0.20 -0.48 16 20 N -0.37 -4.46 10.44 -9.45 -0.10 -4.56 16 21 C 0.06 0.85 6.78 -82.54 -0.56 0.29 16 22 C 0.24 3.25 8.01 -156.28 -1.25 2.00 16 23 N -0.28 -3.97 9.47 32.14 0.30 -3.67 16 24 N -0.03 -0.39 13.47 60.35 0.81 0.42 16 25 N -0.23 -2.04 7.90 60.35 0.48 -1.56 16 26 H 0.48 1.82 8.96 -340.36 -3.05 -1.23 16 27 N -0.27 -3.18 12.39 32.15 0.40 -2.78 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 29 C -0.24 -5.05 9.17 -39.39 -0.36 -5.41 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.43 6.54 5.02 -40.82 -0.20 6.34 16 36 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -34.11 348.86 -9.01 -43.12 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.91 Total: 6.79 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -5.52 Total: -12.95 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 2.19 Total: -52.63 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.91 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.11 -9.01 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.279 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds