Wall clock time and date at job start Tue Mar 31 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38776 * 120.00000 * 180.02562 * 15 14 13 17 17 N 1.32590 * 120.15213 * 359.72335 * 16 15 14 18 18 C 1.32268 * 119.99176 * 179.69806 * 17 16 15 19 19 C 1.38292 * 120.31809 * 0.60520 * 18 17 16 20 20 N 1.32111 * 120.31542 * 359.67831 * 19 18 17 21 21 C 1.32751 * 119.99053 * 0.02562 * 20 19 18 22 22 C 1.48313 * 120.15476 * 179.97438 * 21 20 19 23 23 N 1.34090 * 126.68356 * 180.02562 * 22 21 20 24 24 N 1.28986 * 107.26400 * 180.02562 * 23 22 21 25 25 N 1.28726 * 108.95913 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.33439 * 180.02562 * 25 24 23 27 27 N 1.28873 * 109.33034 * 359.72514 * 25 24 23 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08006 * 119.84059 * 180.29617 * 18 17 16 37 37 H 1.07999 * 119.84173 * 179.69648 * 19 18 17 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3815 -8.7893 1.0377 17 7 5.8499 -9.4186 -0.0313 18 6 6.5582 -10.5264 0.1111 19 6 6.8037 -11.0410 1.3710 20 7 6.3382 -10.4273 2.4443 21 6 5.6307 -9.3113 2.3161 22 6 5.1060 -8.6196 3.5185 23 7 4.3804 -7.4922 3.5414 24 7 4.1268 -7.2252 4.7775 25 7 4.6604 -8.1319 5.5193 26 1 4.6155 -8.1625 6.4877 27 7 5.2584 -8.9959 4.7732 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 6.9426 -11.0344 -0.7611 37 1 7.3789 -11.9488 1.4781 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737697826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:46 Heat of formation + Delta-G solvation = 163.029412 kcal Electronic energy + Delta-G solvation = -27377.772301 eV Core-core repulsion = 23323.993328 eV Total energy + Delta-G solvation = -4053.778972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.57255 -41.96663 -40.82667 -38.76851 -37.02673 -35.81050 -35.13011 -34.37288 -33.80364 -32.23603 -31.81463 -30.19323 -27.68911 -27.06656 -26.24857 -25.47627 -23.90366 -23.65090 -23.50076 -22.09979 -20.45506 -19.87668 -19.10232 -18.71054 -18.40450 -18.27317 -17.75011 -16.58789 -16.52229 -16.19026 -16.03695 -15.68107 -15.51514 -15.42156 -15.16696 -14.98892 -14.52300 -14.36066 -14.04783 -13.80532 -13.50579 -13.38257 -13.02495 -12.71320 -12.56103 -12.53707 -12.47377 -12.35989 -12.30928 -12.14903 -12.07119 -11.97895 -11.20917 -10.93400 -10.82821 -10.14727 -9.80978 -9.00855 -8.78225 -8.48501 -6.16528 -0.51171 0.05036 0.33646 0.54304 0.58212 1.12980 1.32646 1.35084 1.42594 1.53280 2.03262 2.16870 2.48506 2.83072 2.85763 2.91351 3.16322 3.35805 3.48912 3.59679 3.81360 3.93628 4.03423 4.16983 4.21756 4.27462 4.47906 4.49171 4.55363 4.56985 4.74622 4.81121 5.04460 5.14488 5.26562 5.32049 5.51808 5.54022 5.68674 5.75517 6.00668 6.01621 6.08387 6.17772 6.65092 6.89587 6.96340 7.11404 7.75866 8.74766 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002535 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.867639 B =11043.658395 C =12085.024333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.125 3.875 11 C -0.205 4.205 12 C -0.044 4.044 13 C -0.185 4.185 14 C 0.191 3.809 15 N -0.697 5.697 16 C 0.388 3.612 17 N -0.514 5.514 18 C 0.143 3.857 19 C -0.017 4.017 20 N -0.389 5.389 21 C 0.037 3.963 22 C 0.227 3.773 23 N -0.306 5.306 24 N -0.048 5.048 25 N -0.195 5.195 26 H 0.496 0.504 27 N -0.274 5.274 28 C -0.046 4.046 29 C -0.243 4.243 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.422 0.578 36 H 0.221 0.779 37 H 0.212 0.788 38 H 0.137 0.863 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.645 -22.600 4.961 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.135 6.135 10 C 0.074 3.926 11 C -0.224 4.224 12 C -0.063 4.063 13 C -0.186 4.186 14 C 0.068 3.932 15 N -0.333 5.333 16 C 0.146 3.854 17 N -0.238 5.238 18 C -0.022 4.022 19 C -0.183 4.183 20 N -0.104 5.104 21 C -0.111 4.111 22 C -0.054 4.054 23 N -0.180 5.180 24 N -0.042 5.042 25 N -0.047 5.047 26 H 0.356 0.644 27 N -0.127 5.127 28 C -0.065 4.065 29 C -0.263 4.263 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.268 0.732 36 H 0.237 0.763 37 H 0.228 0.772 38 H 0.155 0.845 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.782 -21.757 5.172 26.807 hybrid contribution -0.127 0.969 0.845 1.292 sum 14.655 -20.789 6.017 26.137 Atomic orbital electron populations 1.70185 1.08023 1.28793 1.48731 1.26589 0.96842 1.02730 0.95805 0.84532 0.78264 0.74857 0.78583 1.17474 1.19270 1.19363 1.21871 0.92549 0.81363 1.53111 0.88020 1.83946 1.36012 1.12635 1.80891 1.19952 0.91556 0.87934 0.93204 1.20434 1.00043 0.90465 1.11455 1.20875 0.93177 0.96942 0.95286 1.19577 0.93601 0.94413 1.11016 1.20016 0.98728 0.91240 0.83225 1.45767 1.53626 1.22814 1.11081 1.19209 0.89202 0.87867 0.89145 1.68308 1.14681 1.11389 1.29383 1.24552 0.88397 0.88737 1.00499 1.24064 1.03317 1.03164 0.87736 1.67989 1.03462 1.03792 1.35181 1.17824 1.08551 0.97892 0.86834 1.23133 0.98681 0.92364 0.91235 1.75416 1.16760 1.14431 1.11347 1.78907 1.15223 1.13843 0.96260 1.47860 1.30695 1.12373 1.13803 0.64431 1.75060 1.18322 1.16799 1.02519 1.20932 0.99716 0.90939 0.94891 1.21229 0.93068 0.99993 1.11969 0.91788 0.86663 0.83698 0.89998 0.90245 0.73210 0.76260 0.77155 0.84531 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.55 13.67 21.62 0.30 -56.26 16 2 C -0.02 -1.25 5.49 84.84 0.47 -0.79 16 3 Si 1.02 42.99 29.55 68.60 2.03 45.02 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.41 -24.10 9.49 67.92 0.64 -23.46 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -13.80 9.76 -22.72 -0.22 -14.03 16 10 C 0.12 6.22 6.65 22.58 0.15 6.37 16 11 C -0.20 -8.75 9.99 22.39 0.22 -8.52 16 12 C -0.04 -1.50 9.69 22.25 0.22 -1.29 16 13 C -0.18 -5.84 5.25 -19.84 -0.10 -5.94 16 14 C 0.19 4.83 5.83 85.63 0.50 5.33 16 15 N -0.70 -18.61 5.63 -347.78 -1.96 -20.56 16 16 C 0.39 9.64 7.49 133.37 1.00 10.64 16 17 N -0.51 -10.47 9.73 -191.95 -1.87 -12.34 16 18 C 0.14 1.74 11.21 84.64 0.95 2.69 16 19 C -0.02 -0.22 11.20 84.66 0.95 0.73 16 20 N -0.39 -8.45 10.44 -183.80 -1.92 -10.37 16 21 C 0.04 0.93 6.78 42.19 0.29 1.22 16 22 C 0.23 6.03 8.01 137.30 1.10 7.13 16 23 N -0.31 -8.67 9.47 -52.24 -0.49 -9.17 16 24 N -0.05 -1.16 13.47 37.02 0.50 -0.66 16 25 N -0.20 -3.35 7.90 37.02 0.29 -3.06 16 26 H 0.50 3.18 8.96 -347.53 -3.12 0.07 16 27 N -0.27 -6.20 12.39 -52.19 -0.65 -6.85 16 28 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 29 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.42 12.47 5.02 -92.71 -0.47 12.01 16 36 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.21 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 Total: -1.00 -80.63 348.86 0.39 -80.24 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -2.42 Total: 25.78 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 6.80 Total: -17.74 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -5.80 Total: -119.27 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.22 Total: -14.03 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -80.63 0.39 -80.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.267 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds