Wall clock time and date at job start Tue Mar 31 2020 22:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47297 * 239.99967 * 3 2 1 5 5 H 1.48502 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46995 * 119.99809 * 3 2 1 7 7 C 1.38956 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 201.13118 * 7 2 1 9 9 N 1.37091 * 119.99955 * 21.13051 * 7 2 1 10 10 C 1.46503 * 120.00245 * 16.25980 * 9 7 2 11 11 C 1.50694 * 109.47155 * 264.14631 * 10 9 7 12 12 O 1.20830 * 120.00395 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99970 * 180.02562 * 11 10 9 14 14 C 1.34784 * 120.00078 * 196.26353 * 9 7 2 15 15 O 1.21292 * 119.99871 * 359.97438 * 14 9 7 16 16 C 1.50702 * 120.00105 * 180.02562 * 14 9 7 17 17 N 1.46500 * 109.46667 * 179.97438 * 16 14 9 18 18 C 1.34010 * 124.22340 * 89.97601 * 17 16 14 19 19 O 1.21544 * 123.81413 * 359.93890 * 18 17 16 20 20 N 1.34974 * 112.36586 * 179.97438 * 18 17 16 21 21 C 1.45932 * 106.00222 * 0.02562 * 20 18 17 22 22 C 1.53570 * 112.01385 * 238.41914 * 21 20 18 23 23 C 1.54506 * 104.08055 * 275.01358 * 22 21 20 24 24 C 1.53963 * 106.66490 * 337.67399 * 23 22 21 25 25 C 1.53566 * 112.01439 * 121.57898 * 21 20 18 26 26 C 1.35207 * 124.22397 * 269.94698 * 17 16 14 27 27 O 1.21237 * 127.46069 * 0.04388 * 26 17 16 28 28 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46897 * 24.14497 * 10 9 7 30 30 H 1.09003 * 109.46816 * 144.14756 * 10 9 7 31 31 H 0.96708 * 116.99954 * 179.97438 * 13 11 10 32 32 H 1.08995 * 109.47235 * 59.99677 * 16 14 9 33 33 H 1.09003 * 109.46942 * 299.99732 * 16 14 9 34 34 H 0.97011 * 126.99686 * 180.02562 * 20 18 17 35 35 H 1.09001 * 110.50861 * 156.36930 * 22 21 20 36 36 H 1.08999 * 110.50965 * 33.66673 * 22 21 20 37 37 H 1.09001 * 110.02147 * 218.37216 * 23 22 21 38 38 H 1.08999 * 110.02104 * 96.97645 * 23 22 21 39 39 H 1.09004 * 110.01735 * 119.30232 * 24 23 22 40 40 H 1.09003 * 110.02283 * 240.70221 * 24 23 22 41 41 H 1.09002 * 110.50715 * 326.33338 * 25 21 20 42 42 H 1.09000 * 110.50931 * 203.64129 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0344 -1.2350 0.3366 9 7 1.3926 -2.3505 -0.4290 10 6 0.1548 -2.2698 -1.2086 11 6 -1.0289 -2.4273 -0.2894 12 8 -0.8565 -2.5898 0.8954 13 8 -2.2750 -2.3870 -0.7869 14 6 1.9253 -3.5527 -0.1331 15 8 2.9503 -3.6196 0.5120 16 6 1.2481 -4.8137 -0.6046 17 7 2.0179 -5.9775 -0.1582 18 6 1.8224 -6.6082 1.0079 19 8 0.9825 -6.2790 1.8225 20 7 2.6641 -7.6499 1.1759 21 6 3.4966 -7.6915 -0.0219 22 6 3.3830 -9.0359 -0.7555 23 6 4.4058 -9.9439 -0.0368 24 6 5.4261 -9.0104 0.6399 25 6 4.9905 -7.5650 0.3107 26 6 3.0138 -6.5497 -0.8715 27 8 3.4281 -6.2137 -1.9602 28 1 -0.4850 0.8400 0.0004 29 1 0.1017 -1.3018 -1.7067 30 1 0.1432 -3.0638 -1.9552 31 1 -3.0023 -2.4932 -0.1584 32 1 1.1926 -4.8111 -1.6932 33 1 0.2414 -4.8625 -0.1896 34 1 2.7069 -8.2489 1.9377 35 1 3.6471 -8.9209 -1.8067 36 1 2.3761 -9.4414 -0.6559 37 1 4.9092 -10.5849 -0.7606 38 1 3.9017 -10.5525 0.7140 39 1 5.4165 -9.1664 1.7186 40 1 6.4241 -9.1986 0.2440 41 1 5.1358 -6.9162 1.1744 42 1 5.5425 -7.1863 -0.5495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:07 Heat of formation + Delta-G solvation = -148.824128 kcal Electronic energy + Delta-G solvation = -31219.199027 eV Core-core repulsion = 26780.002648 eV Total energy + Delta-G solvation = -4439.196379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50576 -39.50642 -38.58048 -38.28168 -37.62939 -35.54613 -35.21428 -34.54750 -33.51546 -31.85102 -29.18808 -28.83483 -28.17986 -27.62124 -24.70175 -23.43948 -21.67567 -21.09338 -20.79578 -20.48994 -19.10593 -17.77953 -17.25305 -17.09439 -16.77467 -16.47429 -16.05399 -15.76551 -15.68156 -15.27644 -15.12103 -14.68892 -14.56925 -14.48097 -14.00313 -13.88618 -13.77067 -13.65854 -12.70439 -12.63867 -12.18481 -11.97505 -11.89806 -11.78484 -11.68239 -11.57347 -11.47320 -11.46110 -10.97683 -10.75041 -10.65152 -10.50746 -10.39671 -10.35085 -9.97206 -9.89330 -9.67799 -9.37380 -9.08541 -8.53550 -7.99277 -6.49804 -3.94395 1.77125 2.33256 3.12497 3.18532 3.22425 3.25948 3.28828 3.39694 3.56193 3.90361 4.02226 4.18996 4.22959 4.27642 4.65205 4.76055 4.92540 4.98262 5.09132 5.13725 5.20780 5.29757 5.40665 5.44465 5.52387 5.60180 5.66417 5.73289 5.77617 5.82319 5.90433 5.95517 6.02278 6.39071 6.52528 6.88960 7.25683 7.46674 7.50982 7.54090 7.86788 8.27741 8.34887 8.98244 9.01414 9.21787 9.71120 10.58797 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.003678 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.267800 B = 7610.495877 C = 8410.332919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.108 0.892 9 N -0.424 5.424 10 C 0.141 3.859 11 C 0.484 3.516 12 O -0.496 6.496 13 O -0.534 6.534 14 C 0.448 3.552 15 O -0.566 6.566 16 C 0.103 3.897 17 N -0.554 5.554 18 C 0.707 3.293 19 O -0.531 6.531 20 N -0.715 5.715 21 C 0.115 3.885 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.118 4.118 26 C 0.542 3.458 27 O -0.465 6.465 28 H 0.273 0.727 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.393 0.607 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.437 0.563 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -16.853 -4.786 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.126 0.874 9 N -0.144 5.144 10 C 0.014 3.986 11 C 0.324 3.676 12 O -0.381 6.381 13 O -0.345 6.345 14 C 0.235 3.765 15 O -0.448 6.448 16 C -0.022 4.022 17 N -0.299 5.299 18 C 0.408 3.592 19 O -0.402 6.402 20 N -0.380 5.380 21 C 0.024 3.976 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.156 4.156 26 C 0.329 3.671 27 O -0.334 6.334 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.281 0.719 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.324 -16.256 -4.591 17.216 hybrid contribution -0.436 0.798 0.969 1.329 sum 2.887 -15.458 -3.621 16.137 Atomic orbital electron populations 1.69785 1.06052 1.28183 1.47932 1.25255 0.95355 1.00036 0.96566 0.85887 0.78959 0.80045 0.79204 1.19715 1.20928 1.19796 1.19679 0.97646 0.83028 1.42831 0.87394 1.43381 1.19578 1.05088 1.46340 1.20769 0.81364 1.05210 0.91243 1.23789 0.83250 0.71323 0.89267 1.90671 1.85525 1.44356 1.17538 1.84508 1.17351 1.86377 1.46279 1.19996 0.88050 0.84146 0.84313 1.90539 1.25789 1.86021 1.42448 1.21553 0.95894 0.83632 1.01140 1.45973 1.35158 1.29318 1.19455 1.15953 0.81840 0.79907 0.81513 1.91040 1.36213 1.68348 1.44646 1.45194 1.37327 1.33673 1.21806 1.21310 0.94199 0.95985 0.86144 1.22489 1.00985 0.91784 1.00321 1.22201 0.96303 0.97754 0.99678 1.22214 0.99430 0.93442 1.00929 1.22478 0.91007 0.98318 1.03823 1.20303 0.78381 0.83019 0.85384 1.90764 1.58036 1.66237 1.18374 0.91674 0.84843 0.90479 0.75001 0.87237 0.87169 0.71868 0.89008 0.90026 0.90908 0.91328 0.91296 0.90875 0.89608 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.99 9.25 55.50 0.51 -22.47 16 2 C 0.03 0.80 4.89 -17.47 -0.09 0.72 16 3 Si 0.93 20.55 29.60 -169.99 -5.03 15.52 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.44 9.35 -14.93 -0.14 -8.58 16 8 H 0.11 3.14 7.36 -52.49 -0.39 2.76 16 9 N -0.42 -10.80 2.18 -116.10 -0.25 -11.05 16 10 C 0.14 3.03 4.97 -5.19 -0.03 3.00 16 11 C 0.48 10.75 5.87 36.00 0.21 10.96 16 12 O -0.50 -13.22 16.81 -18.75 -0.32 -13.53 16 13 O -0.53 -9.49 13.42 -39.26 -0.53 -10.02 16 14 C 0.45 11.26 7.49 -10.98 -0.08 11.18 16 15 O -0.57 -16.07 16.07 5.55 0.09 -15.98 16 16 C 0.10 2.05 4.81 -5.19 -0.02 2.03 16 17 N -0.55 -10.31 2.11 -122.22 -0.26 -10.57 16 18 C 0.71 12.94 8.64 -87.42 -0.76 12.18 16 19 O -0.53 -11.81 17.50 5.33 0.09 -11.72 16 20 N -0.72 -9.20 6.03 -53.63 -0.32 -9.53 16 21 C 0.12 1.40 1.04 -132.89 -0.14 1.26 16 22 C -0.12 -1.01 6.02 -25.64 -0.15 -1.17 16 23 C -0.12 -0.79 6.82 -25.44 -0.17 -0.96 16 24 C -0.12 -0.89 6.82 -25.44 -0.17 -1.07 16 25 C -0.12 -1.27 6.03 -25.65 -0.15 -1.42 16 26 C 0.54 8.95 7.02 -10.99 -0.08 8.87 16 27 O -0.46 -8.43 17.79 5.59 0.10 -8.33 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.13 2.95 6.34 -51.93 -0.33 2.62 16 30 H 0.08 1.30 6.69 -51.93 -0.35 0.96 16 31 H 0.39 5.43 9.10 45.56 0.41 5.85 16 32 H 0.11 1.81 7.30 -51.93 -0.38 1.44 16 33 H 0.11 2.19 7.25 -51.93 -0.38 1.82 16 34 H 0.44 4.31 8.96 -40.82 -0.37 3.94 16 35 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -37.92 358.15 -6.57 -44.49 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.28 Total: 10.79 kcal Atomic # 6 Polarization: 38.78 SS G_CDS: -1.77 Total: 37.01 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.32 Total: -53.62 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.56 Total: -59.58 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.92 -6.57 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.335 kcal (2) G-P(sol) polarization free energy of solvation -37.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds