Wall clock time and date at job start Tue Mar 31 2020 22:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47297 * 239.99967 * 3 2 1 5 5 H 1.48502 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46995 * 119.99809 * 3 2 1 7 7 C 1.38956 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 201.13118 * 7 2 1 9 9 N 1.37091 * 119.99955 * 21.13051 * 7 2 1 10 10 C 1.46503 * 120.00245 * 16.25980 * 9 7 2 11 11 C 1.50694 * 109.47155 * 264.14631 * 10 9 7 12 12 O 1.20830 * 120.00395 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99970 * 180.02562 * 11 10 9 14 14 C 1.34784 * 120.00078 * 196.26353 * 9 7 2 15 15 O 1.21292 * 119.99871 * 359.97438 * 14 9 7 16 16 C 1.50702 * 120.00105 * 180.02562 * 14 9 7 17 17 N 1.46500 * 109.46667 * 179.97438 * 16 14 9 18 18 C 1.34010 * 124.22340 * 89.97601 * 17 16 14 19 19 O 1.21544 * 123.81413 * 359.93890 * 18 17 16 20 20 N 1.34974 * 112.36586 * 179.97438 * 18 17 16 21 21 C 1.45932 * 106.00222 * 0.02562 * 20 18 17 22 22 C 1.53570 * 112.01385 * 238.41914 * 21 20 18 23 23 C 1.54506 * 104.08055 * 275.01358 * 22 21 20 24 24 C 1.53963 * 106.66490 * 337.67399 * 23 22 21 25 25 C 1.53566 * 112.01439 * 121.57898 * 21 20 18 26 26 C 1.35207 * 124.22397 * 269.94698 * 17 16 14 27 27 O 1.21237 * 127.46069 * 0.04388 * 26 17 16 28 28 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46897 * 24.14497 * 10 9 7 30 30 H 1.09003 * 109.46816 * 144.14756 * 10 9 7 31 31 H 0.96708 * 116.99954 * 179.97438 * 13 11 10 32 32 H 1.08995 * 109.47235 * 59.99677 * 16 14 9 33 33 H 1.09003 * 109.46942 * 299.99732 * 16 14 9 34 34 H 0.97011 * 126.99686 * 180.02562 * 20 18 17 35 35 H 1.09001 * 110.50861 * 156.36930 * 22 21 20 36 36 H 1.08999 * 110.50965 * 33.66673 * 22 21 20 37 37 H 1.09001 * 110.02147 * 218.37216 * 23 22 21 38 38 H 1.08999 * 110.02104 * 96.97645 * 23 22 21 39 39 H 1.09004 * 110.01735 * 119.30232 * 24 23 22 40 40 H 1.09003 * 110.02283 * 240.70221 * 24 23 22 41 41 H 1.09002 * 110.50715 * 326.33338 * 25 21 20 42 42 H 1.09000 * 110.50931 * 203.64129 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0344 -1.2350 0.3366 9 7 1.3926 -2.3505 -0.4290 10 6 0.1548 -2.2698 -1.2086 11 6 -1.0289 -2.4273 -0.2894 12 8 -0.8565 -2.5898 0.8954 13 8 -2.2750 -2.3870 -0.7869 14 6 1.9253 -3.5527 -0.1331 15 8 2.9503 -3.6196 0.5120 16 6 1.2481 -4.8137 -0.6046 17 7 2.0179 -5.9775 -0.1582 18 6 1.8224 -6.6082 1.0079 19 8 0.9825 -6.2790 1.8225 20 7 2.6641 -7.6499 1.1759 21 6 3.4966 -7.6915 -0.0219 22 6 3.3830 -9.0359 -0.7555 23 6 4.4058 -9.9439 -0.0368 24 6 5.4261 -9.0104 0.6399 25 6 4.9905 -7.5650 0.3107 26 6 3.0138 -6.5497 -0.8715 27 8 3.4281 -6.2137 -1.9602 28 1 -0.4850 0.8400 0.0004 29 1 0.1017 -1.3018 -1.7067 30 1 0.1432 -3.0638 -1.9552 31 1 -3.0023 -2.4932 -0.1584 32 1 1.1926 -4.8111 -1.6932 33 1 0.2414 -4.8625 -0.1896 34 1 2.7069 -8.2489 1.9377 35 1 3.6471 -8.9209 -1.8067 36 1 2.3761 -9.4414 -0.6559 37 1 4.9092 -10.5849 -0.7606 38 1 3.9017 -10.5525 0.7140 39 1 5.4165 -9.1664 1.7186 40 1 6.4241 -9.1986 0.2440 41 1 5.1358 -6.9162 1.1744 42 1 5.5425 -7.1863 -0.5495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:06 Heat of formation + Delta-G solvation = -178.524589 kcal Electronic energy + Delta-G solvation = -31220.486935 eV Core-core repulsion = 26780.002648 eV Total energy + Delta-G solvation = -4440.484287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.78850 -41.29180 -40.08388 -39.85502 -38.81694 -37.19015 -36.79430 -36.39213 -34.76705 -33.82621 -30.30625 -29.90594 -29.54659 -29.13541 -26.60393 -24.70985 -23.19856 -22.70113 -21.63323 -21.42199 -20.80313 -19.14463 -19.11432 -18.79846 -18.52326 -17.69352 -17.48621 -17.29934 -17.06353 -16.73128 -16.38870 -16.26633 -16.19184 -15.70397 -15.64718 -15.51980 -15.29972 -14.66722 -14.41466 -13.88065 -13.62040 -13.60519 -13.49654 -13.24891 -12.89353 -12.74102 -12.69154 -12.46012 -12.20669 -12.18800 -12.15127 -12.13902 -12.00971 -11.59029 -11.53462 -11.29989 -11.27853 -11.01167 -10.56441 -10.37507 -9.97255 -8.49731 -6.02731 0.46124 0.97309 1.32295 1.40821 1.51887 1.61548 1.74957 1.83690 2.11042 2.22002 2.47608 2.78013 2.86689 3.01607 3.40381 3.41757 3.63438 3.77912 3.93707 4.07985 4.18863 4.22817 4.28700 4.39843 4.46310 4.49059 4.68071 4.69502 4.79512 4.86206 5.00195 5.03922 5.23166 5.28676 5.39550 5.46444 5.73493 5.87617 5.92868 5.93728 6.24040 6.30887 6.98279 7.01723 7.18552 7.39513 7.75583 8.56599 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.003678 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.267800 B = 7610.495877 C = 8410.332919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.004 3.996 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.345 4.345 8 H 0.078 0.922 9 N -0.433 5.433 10 C 0.135 3.865 11 C 0.493 3.507 12 O -0.548 6.548 13 O -0.515 6.515 14 C 0.432 3.568 15 O -0.614 6.614 16 C 0.112 3.888 17 N -0.565 5.565 18 C 0.699 3.301 19 O -0.580 6.580 20 N -0.687 5.687 21 C 0.117 3.883 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.120 4.120 26 C 0.533 3.467 27 O -0.485 6.485 28 H 0.278 0.722 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.415 0.585 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.453 0.547 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -18.507 -6.039 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.210 1.210 7 C -0.472 4.472 8 H 0.096 0.904 9 N -0.152 5.152 10 C 0.010 3.990 11 C 0.335 3.665 12 O -0.437 6.437 13 O -0.327 6.327 14 C 0.221 3.779 15 O -0.500 6.500 16 C -0.014 4.014 17 N -0.310 5.310 18 C 0.400 3.600 19 O -0.456 6.456 20 N -0.352 5.352 21 C 0.026 3.974 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.159 4.159 26 C 0.322 3.678 27 O -0.356 6.356 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.274 0.726 32 H 0.161 0.839 33 H 0.127 0.873 34 H 0.301 0.699 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.289 -17.961 -5.889 19.186 hybrid contribution -0.492 1.354 1.329 1.960 sum 2.798 -16.607 -4.560 17.448 Atomic orbital electron populations 1.69862 1.06795 1.29128 1.46855 1.26003 0.96206 1.02373 0.95269 0.84973 0.77913 0.76273 0.78973 1.18439 1.19390 1.20960 1.19587 0.97219 0.84985 1.45440 0.90413 1.43540 1.20642 1.04755 1.46287 1.20999 0.79817 1.06769 0.91431 1.23798 0.84440 0.69881 0.88366 1.90665 1.86448 1.46918 1.19639 1.84434 1.16569 1.85394 1.46315 1.20879 0.87670 0.85605 0.83761 1.90484 1.27907 1.86988 1.44623 1.21422 0.95222 0.81847 1.02905 1.46143 1.35795 1.28958 1.20059 1.16203 0.82051 0.80726 0.80995 1.90999 1.38538 1.69987 1.46052 1.45071 1.35596 1.32031 1.22551 1.21572 0.94453 0.96204 0.85124 1.22557 1.02617 0.89523 1.00186 1.22218 0.95409 0.97235 1.00276 1.22218 1.00441 0.90619 1.01929 1.22532 0.89770 1.00809 1.02780 1.21090 0.77541 0.83721 0.85432 1.90739 1.58347 1.67131 1.19385 0.91205 0.85339 0.85696 0.72581 0.83860 0.87264 0.69948 0.88744 0.88930 0.88982 0.89581 0.90179 0.89405 0.91533 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.28 9.25 21.66 0.20 -46.08 16 2 C 0.00 0.20 4.89 84.93 0.42 0.61 16 3 Si 1.00 42.37 29.60 68.60 2.03 44.40 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.35 -19.83 9.35 84.04 0.79 -19.05 16 8 H 0.08 4.82 7.36 -2.91 -0.02 4.80 16 9 N -0.43 -22.70 2.18 -639.59 -1.39 -24.09 16 10 C 0.14 5.77 4.97 85.63 0.43 6.19 16 11 C 0.49 21.70 5.87 71.23 0.42 22.12 16 12 O -0.55 -29.71 16.81 21.95 0.37 -29.34 16 13 O -0.51 -17.37 13.42 -51.42 -0.69 -18.06 16 14 C 0.43 22.56 7.49 87.66 0.66 23.22 16 15 O -0.61 -36.85 16.07 -3.07 -0.05 -36.90 16 16 C 0.11 4.50 4.81 85.63 0.41 4.92 16 17 N -0.56 -21.34 2.11 -777.47 -1.64 -22.98 16 18 C 0.70 26.06 8.64 179.23 1.55 27.61 16 19 O -0.58 -26.73 17.50 -3.85 -0.07 -26.80 16 20 N -0.69 -17.18 6.03 -441.74 -2.66 -19.84 16 21 C 0.12 2.71 1.04 3.22 0.00 2.72 16 22 C -0.11 -1.59 6.02 31.30 0.19 -1.41 16 23 C -0.11 -1.01 6.82 31.43 0.21 -0.80 16 24 C -0.11 -1.32 6.82 31.43 0.21 -1.10 16 25 C -0.12 -2.47 6.03 31.30 0.19 -2.29 16 26 C 0.53 17.57 7.02 87.46 0.61 18.19 16 27 O -0.49 -17.60 17.79 -2.90 -0.05 -17.65 16 28 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.13 5.62 6.34 -2.39 -0.02 5.60 16 30 H 0.13 4.01 6.69 -2.39 -0.02 4.00 16 31 H 0.41 10.62 9.10 -74.05 -0.67 9.95 16 32 H 0.14 4.63 7.30 -2.39 -0.02 4.62 16 33 H 0.11 4.42 7.25 -2.39 -0.02 4.41 16 34 H 0.45 8.24 8.96 -92.70 -0.83 7.41 16 35 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.88 8.07 -2.39 -0.02 1.86 16 Total: -1.00 -87.58 358.15 1.73 -85.84 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.40 Total: 30.56 kcal Atomic # 6 Polarization: 74.85 SS G_CDS: 6.08 Total: 80.94 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -5.50 Total: -112.99 kcal Atomic # 8 Polarization: -128.25 SS G_CDS: -0.49 Total: -128.74 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -87.58 1.73 -85.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.683 kcal (2) G-P(sol) polarization free energy of solvation -87.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds