Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 C 1.52996 * 109.46895 * 119.99752 * 2 1 3 5 5 N 1.46500 * 109.47055 * 65.00514 * 4 2 1 6 6 C 1.35047 * 126.39450 * 270.00009 * 5 4 2 7 7 N 1.30499 * 108.69936 * 179.76859 * 6 5 4 8 8 C 1.34133 * 109.25686 * 0.37263 * 7 6 5 9 9 S 1.76201 * 125.99181 * 179.88508 * 8 7 6 10 10 O 1.42097 * 106.40194 * 156.15588 * 9 8 7 11 11 O 1.42098 * 106.40103 * 23.23431 * 9 8 7 12 12 N 1.65598 * 107.21648 * 269.69467 * 9 8 7 13 13 C 1.40575 * 120.00008 * 65.00063 * 12 9 8 14 14 C 1.40653 * 126.07841 * 314.99761 * 13 12 9 15 15 N 1.30928 * 108.40643 * 179.71886 * 14 13 12 16 16 N 1.40079 * 108.39862 * 0.43829 * 15 14 13 17 17 C 1.37307 * 126.07897 * 179.81764 * 16 15 14 18 18 H 1.08002 * 120.00270 * 179.69747 * 17 16 15 19 19 C 1.38978 * 119.99968 * 359.41624 * 17 16 15 20 20 N 1.31304 * 120.00019 * 0.27648 * 19 17 16 21 21 Si 1.86803 * 119.99981 * 180.27794 * 19 17 16 22 22 H 1.48499 * 109.47262 * 60.00394 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99985 * 21 19 17 25 25 C 1.35647 * 126.07435 * 134.99373 * 13 12 9 26 26 C 1.34667 * 108.01744 * 359.62891 * 8 7 6 27 27 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47682 * 300.00068 * 1 2 3 29 29 H 1.09005 * 109.47146 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47045 * 240.00299 * 2 1 3 31 31 H 1.08998 * 109.47552 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46968 * 300.00359 * 3 2 1 33 33 H 1.09006 * 109.47192 * 59.99898 * 3 2 1 34 34 H 1.09000 * 109.47478 * 305.00092 * 4 2 1 35 35 H 1.09006 * 109.46975 * 185.00047 * 4 2 1 36 36 H 1.07997 * 125.65476 * 359.97438 * 6 5 4 37 37 H 0.96996 * 119.99991 * 244.99137 * 12 9 8 38 38 H 1.07998 * 125.79184 * 359.97438 * 14 13 12 39 39 H 0.97005 * 119.99967 * 179.97438 * 20 19 17 40 40 H 1.08000 * 126.24429 * 0.04227 * 25 13 12 41 41 H 1.08003 * 126.59231 * 180.20740 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.5116 -2.6713 1.6725 7 7 0.5194 -3.9536 1.4307 8 6 1.6577 -4.2778 0.7995 9 16 2.1242 -5.8921 0.2694 10 8 3.0543 -5.7135 -0.7899 11 8 0.9192 -6.6322 0.1292 12 7 2.9618 -6.5937 1.5137 13 6 2.3129 -6.8712 2.7295 14 6 1.4493 -6.0050 3.4240 15 7 1.0370 -6.6135 4.5075 16 7 1.6264 -7.8834 4.5529 17 6 1.4458 -8.8240 5.5367 18 1 1.9475 -9.7781 5.4704 19 6 0.6219 -8.5461 6.6209 20 7 0.0120 -7.3861 6.7016 21 14 0.3823 -9.8228 7.9633 22 1 1.6937 -10.1426 8.5821 23 1 -0.5365 -9.2856 8.9990 24 1 -0.2016 -11.0554 7.3756 25 6 2.4083 -8.0219 3.4414 26 6 2.3790 -3.1523 0.6370 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 -0.2782 -2.1298 2.1720 37 1 3.9001 -6.8134 1.4037 38 1 1.1703 -5.0089 3.1138 39 1 -0.5634 -7.1923 7.4582 40 1 2.9957 -8.8890 3.1778 41 1 3.3452 -3.0698 0.1615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749864953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = 68.750598 kcal Electronic energy + Delta-G solvation = -27222.630469 eV Core-core repulsion = 23267.914460 eV Total energy + Delta-G solvation = -3954.716008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25287 -39.40308 -37.06456 -36.67515 -35.30238 -34.40681 -32.92818 -32.88528 -30.15048 -29.84863 -27.67476 -27.28507 -26.89720 -24.70015 -22.43159 -21.62561 -20.70200 -20.57525 -19.88762 -18.87575 -18.10818 -17.40010 -16.75610 -15.96238 -15.78143 -15.54278 -15.43233 -15.25187 -14.73505 -14.28595 -14.05260 -13.91258 -13.69676 -13.36860 -13.21064 -12.92437 -12.81551 -12.52489 -12.04143 -11.85194 -11.75518 -11.63068 -11.56884 -11.51079 -11.36917 -11.31713 -11.14008 -11.12048 -10.83958 -10.51619 -10.15978 -9.90540 -9.70972 -9.24553 -8.89476 -8.70590 -8.03493 -6.88160 -6.50105 -4.19425 0.90937 1.66825 2.52809 2.74570 3.01736 3.09562 3.12659 3.55779 3.69137 3.90678 4.11695 4.18309 4.21280 4.36352 4.40510 4.50781 4.70370 4.74677 4.83861 4.91750 4.98025 5.08068 5.10128 5.15291 5.32983 5.39321 5.49333 5.57648 5.73595 5.79495 5.99166 6.18832 6.26354 6.43044 6.55197 6.93371 6.99592 7.21979 7.41823 7.69104 7.85340 7.91690 8.27783 8.73766 9.43186 9.68628 10.45952 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003157 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.456059 B = 8866.034378 C =10150.679010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.102 3.898 5 N -0.452 5.452 6 C 0.184 3.816 7 N -0.399 5.399 8 C -0.548 4.548 9 S 2.730 3.270 10 O -0.978 6.978 11 O -0.938 6.938 12 N -1.017 6.017 13 C -0.054 4.054 14 C -0.049 4.049 15 N -0.249 5.249 16 N -0.145 5.145 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.047 3.953 20 N -0.773 5.773 21 Si 0.934 3.066 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.058 4.058 26 C 0.063 3.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.211 0.789 37 H 0.408 0.592 38 H 0.164 0.836 39 H 0.274 0.726 40 H 0.148 0.852 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 16.038 -9.418 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.203 4.203 4 C -0.020 4.020 5 N -0.133 5.133 6 C -0.101 4.101 7 N -0.115 5.115 8 C -0.758 4.758 9 S 2.815 3.185 10 O -0.967 6.967 11 O -0.927 6.927 12 N -0.771 5.771 13 C -0.162 4.162 14 C -0.227 4.227 15 N -0.079 5.079 16 N 0.087 4.913 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.170 4.170 20 N -0.399 5.399 21 Si 0.758 3.242 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.210 4.210 26 C -0.078 4.078 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.228 0.772 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.701 15.549 -8.773 18.233 hybrid contribution 1.436 0.622 0.128 1.570 sum 5.136 16.172 -8.645 19.043 Atomic orbital electron populations 1.21944 0.94192 1.02745 1.02413 1.21530 0.97278 0.96830 0.97674 1.21777 1.01222 0.94646 1.02632 1.22168 1.02114 0.77557 1.00188 1.45876 1.16743 1.08322 1.42317 1.25385 0.90898 0.90713 1.03106 1.70413 1.17886 1.11250 1.11990 1.33482 1.01700 1.21419 1.19248 1.00992 0.73248 0.72678 0.71612 1.93548 1.64092 1.87187 1.51908 1.93572 1.46614 1.68121 1.84416 1.52117 1.21718 1.76459 1.26826 1.16700 1.11255 0.96302 0.91908 1.23989 1.02972 1.00428 0.95293 1.78194 1.19753 0.91593 1.18356 1.44575 1.24144 1.10046 1.12513 1.19828 1.30463 0.95738 0.99516 0.86595 1.25622 0.95373 0.97257 0.98744 1.70209 1.21723 1.19977 1.28028 0.85904 0.78857 0.79965 0.79453 1.19245 1.20230 1.19122 1.21612 1.06412 0.99347 0.93666 1.22620 0.98763 0.86643 0.99758 0.91952 0.92168 0.92066 0.90236 0.92234 0.91833 0.92144 0.88219 0.88579 0.77225 0.75724 0.81885 0.91535 0.83419 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.89 37.16 0.33 -0.70 16 2 C -0.11 -0.68 3.13 -90.62 -0.28 -0.96 16 3 C -0.14 -0.62 9.19 37.16 0.34 -0.28 16 4 C 0.10 0.67 5.58 -4.04 -0.02 0.64 16 5 N -0.45 -4.90 2.57 -118.58 -0.31 -5.21 16 6 C 0.18 2.45 10.86 -90.37 -0.98 1.47 16 7 N -0.40 -7.23 9.04 -13.86 -0.13 -7.35 16 8 C -0.55 -9.31 5.96 -17.81 -0.11 -9.41 16 9 S 2.73 50.91 5.77 -107.50 -0.62 50.29 16 10 O -0.98 -17.54 17.84 -57.17 -1.02 -18.56 16 11 O -0.94 -21.76 17.74 -57.17 -1.01 -22.77 16 12 N -1.02 -18.95 5.93 32.33 0.19 -18.76 16 13 C -0.05 -1.27 6.41 -83.86 -0.54 -1.80 16 14 C -0.05 -1.26 11.30 -17.03 -0.19 -1.46 16 15 N -0.25 -7.23 10.40 30.80 0.32 -6.91 16 16 N -0.15 -4.06 3.74 -11.40 -0.04 -4.10 16 17 C -0.32 -8.69 10.25 -14.82 -0.15 -8.84 16 18 H 0.12 2.79 7.83 -52.49 -0.41 2.37 16 19 C 0.05 1.22 5.50 -17.50 -0.10 1.13 16 20 N -0.77 -21.64 11.81 55.49 0.66 -20.98 16 21 Si 0.93 19.18 29.55 -169.99 -5.02 14.16 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.06 -1.42 11.50 -16.36 -0.19 -1.61 16 26 C 0.06 0.81 11.31 -16.56 -0.19 0.62 16 27 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.41 6.13 8.96 -34.47 -0.31 5.83 16 38 H 0.16 3.88 4.81 -52.49 -0.25 3.63 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.15 3.09 8.06 -52.49 -0.42 2.67 16 41 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -38.33 361.30 -8.71 -47.04 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.09 Total: 8.91 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -2.08 Total: -21.20 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.69 Total: -63.30 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -2.03 Total: -41.34 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: 50.91 SS G_CDS: -0.62 Total: 50.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.33 -8.71 -47.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749864953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.786 kcal (2) G-P(sol) polarization free energy of solvation -38.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds