Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 C 1.52996 * 109.46895 * 119.99752 * 2 1 3 5 5 N 1.46500 * 109.47055 * 65.00514 * 4 2 1 6 6 C 1.35047 * 126.39450 * 270.00009 * 5 4 2 7 7 N 1.30499 * 108.69936 * 179.76859 * 6 5 4 8 8 C 1.34133 * 109.25686 * 0.37263 * 7 6 5 9 9 S 1.76201 * 125.99181 * 179.88508 * 8 7 6 10 10 O 1.42097 * 106.40194 * 156.15588 * 9 8 7 11 11 O 1.42098 * 106.40103 * 23.23431 * 9 8 7 12 12 N 1.65598 * 107.21648 * 269.69467 * 9 8 7 13 13 C 1.40575 * 120.00008 * 65.00063 * 12 9 8 14 14 C 1.40653 * 126.07841 * 314.99761 * 13 12 9 15 15 N 1.30928 * 108.40643 * 179.71886 * 14 13 12 16 16 N 1.40079 * 108.39862 * 0.43829 * 15 14 13 17 17 C 1.37307 * 126.07897 * 179.81764 * 16 15 14 18 18 H 1.08002 * 120.00270 * 179.69747 * 17 16 15 19 19 C 1.38978 * 119.99968 * 359.41624 * 17 16 15 20 20 N 1.31304 * 120.00019 * 0.27648 * 19 17 16 21 21 Si 1.86803 * 119.99981 * 180.27794 * 19 17 16 22 22 H 1.48499 * 109.47262 * 60.00394 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99985 * 21 19 17 25 25 C 1.35647 * 126.07435 * 134.99373 * 13 12 9 26 26 C 1.34667 * 108.01744 * 359.62891 * 8 7 6 27 27 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47682 * 300.00068 * 1 2 3 29 29 H 1.09005 * 109.47146 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47045 * 240.00299 * 2 1 3 31 31 H 1.08998 * 109.47552 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46968 * 300.00359 * 3 2 1 33 33 H 1.09006 * 109.47192 * 59.99898 * 3 2 1 34 34 H 1.09000 * 109.47478 * 305.00092 * 4 2 1 35 35 H 1.09006 * 109.46975 * 185.00047 * 4 2 1 36 36 H 1.07997 * 125.65476 * 359.97438 * 6 5 4 37 37 H 0.96996 * 119.99991 * 244.99137 * 12 9 8 38 38 H 1.07998 * 125.79184 * 359.97438 * 14 13 12 39 39 H 0.97005 * 119.99967 * 179.97438 * 20 19 17 40 40 H 1.08000 * 126.24429 * 0.04227 * 25 13 12 41 41 H 1.08003 * 126.59231 * 180.20740 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.5116 -2.6713 1.6725 7 7 0.5194 -3.9536 1.4307 8 6 1.6577 -4.2778 0.7995 9 16 2.1242 -5.8921 0.2694 10 8 3.0543 -5.7135 -0.7899 11 8 0.9192 -6.6322 0.1292 12 7 2.9618 -6.5937 1.5137 13 6 2.3129 -6.8712 2.7295 14 6 1.4493 -6.0050 3.4240 15 7 1.0370 -6.6135 4.5075 16 7 1.6264 -7.8834 4.5529 17 6 1.4458 -8.8240 5.5367 18 1 1.9475 -9.7781 5.4704 19 6 0.6219 -8.5461 6.6209 20 7 0.0120 -7.3861 6.7016 21 14 0.3823 -9.8228 7.9633 22 1 1.6937 -10.1426 8.5821 23 1 -0.5365 -9.2856 8.9990 24 1 -0.2016 -11.0554 7.3756 25 6 2.4083 -8.0219 3.4414 26 6 2.3790 -3.1523 0.6370 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 -0.2782 -2.1298 2.1720 37 1 3.9001 -6.8134 1.4037 38 1 1.1703 -5.0089 3.1138 39 1 -0.5634 -7.1923 7.4582 40 1 2.9957 -8.8890 3.1778 41 1 3.3452 -3.0698 0.1615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749864953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = 40.754206 kcal Electronic energy + Delta-G solvation = -27223.844483 eV Core-core repulsion = 23267.914460 eV Total energy + Delta-G solvation = -3955.930023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.27137 -41.36121 -38.21830 -37.65066 -36.89701 -36.18216 -34.77349 -33.74939 -32.14810 -30.93213 -29.19506 -28.14627 -27.54275 -26.64625 -23.58468 -22.68528 -22.39449 -21.70155 -21.24477 -20.45626 -19.45320 -18.91160 -18.32264 -17.47620 -17.15097 -16.88890 -16.58768 -16.16929 -16.00769 -15.63843 -15.20090 -15.19429 -14.96151 -14.90430 -14.54729 -13.91297 -13.72351 -13.47750 -13.33974 -13.19409 -13.17079 -13.04796 -12.95873 -12.83492 -12.72258 -12.61017 -12.40491 -12.11482 -11.98337 -11.77785 -11.74667 -11.14168 -11.05010 -10.76304 -10.62141 -10.06767 -10.00524 -8.78634 -8.43113 -6.22381 -0.53907 0.62266 1.33417 1.41699 1.56719 1.59451 1.69569 1.78872 2.11124 2.21239 2.37260 2.84724 2.91279 3.12156 3.26831 3.65591 3.72130 3.78750 3.91015 4.11088 4.22189 4.28077 4.39865 4.45995 4.63161 4.64092 4.73665 4.77335 4.90761 4.94648 5.00391 5.05580 5.17907 5.21629 5.30501 5.33716 5.38406 5.51543 5.96102 6.06320 6.17001 6.41371 6.78640 6.80374 7.48245 7.68487 8.55958 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003157 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.456059 B = 8866.034378 C =10150.679010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.094 3.906 5 N -0.439 5.439 6 C 0.191 3.809 7 N -0.462 5.462 8 C -0.586 4.586 9 S 2.746 3.254 10 O -0.972 6.972 11 O -0.992 6.992 12 N -1.009 6.009 13 C -0.040 4.040 14 C -0.061 4.061 15 N -0.298 5.298 16 N -0.170 5.170 17 C -0.357 4.357 18 H 0.137 0.863 19 C -0.004 4.004 20 N -0.822 5.822 21 Si 1.018 2.982 22 H -0.253 1.253 23 H -0.276 1.276 24 H -0.258 1.258 25 C -0.068 4.068 26 C 0.087 3.913 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.238 0.762 37 H 0.426 0.574 38 H 0.178 0.822 39 H 0.276 0.724 40 H 0.181 0.819 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 17.324 -9.322 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.128 4.128 3 C -0.198 4.198 4 C -0.026 4.026 5 N -0.118 5.118 6 C -0.096 4.096 7 N -0.179 5.179 8 C -0.799 4.799 9 S 2.835 3.165 10 O -0.962 6.962 11 O -0.982 6.982 12 N -0.764 5.764 13 C -0.148 4.148 14 C -0.238 4.238 15 N -0.129 5.129 16 N 0.061 4.939 17 C -0.488 4.488 18 H 0.155 0.845 19 C -0.216 4.216 20 N -0.450 5.450 21 Si 0.837 3.163 22 H -0.177 1.177 23 H -0.201 1.201 24 H -0.182 1.182 25 C -0.220 4.220 26 C -0.057 4.057 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.254 0.746 37 H 0.263 0.737 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.198 0.802 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.429 16.814 -8.718 19.703 hybrid contribution 0.964 0.433 -0.067 1.058 sum 6.392 17.247 -8.785 20.384 Atomic orbital electron populations 1.21957 0.94946 1.01393 1.03139 1.21485 0.96569 0.97809 0.96899 1.21741 1.01781 0.93206 1.03062 1.22608 1.03831 0.74843 1.01306 1.46103 1.15486 1.09715 1.40479 1.25848 0.91953 0.89754 1.02004 1.70276 1.19309 1.14028 1.14278 1.32872 1.03193 1.21307 1.22551 1.00102 0.72133 0.72875 0.71350 1.93541 1.63652 1.87390 1.51607 1.93507 1.48763 1.70581 1.85343 1.51973 1.22597 1.76860 1.25018 1.16713 1.10128 0.95306 0.92655 1.24344 1.03204 1.01279 0.95021 1.78087 1.21583 0.92927 1.20294 1.44862 1.25195 1.10075 1.13772 1.20543 1.31534 0.96626 1.00107 0.84546 1.26824 0.94291 0.99449 1.01027 1.70378 1.22905 1.22543 1.29163 0.84675 0.79271 0.76727 0.75647 1.17666 1.20051 1.18206 1.22312 1.06018 1.00698 0.92982 1.23120 0.99182 0.85762 0.97676 0.94245 0.90942 0.91974 0.91236 0.91305 0.91862 0.91314 0.86287 0.86228 0.74585 0.73659 0.80573 0.91380 0.80198 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.89 71.98 0.64 -1.16 16 2 C -0.11 -0.99 3.13 -10.80 -0.03 -1.02 16 3 C -0.14 -0.76 9.19 71.98 0.66 -0.10 16 4 C 0.09 0.90 5.58 86.38 0.48 1.38 16 5 N -0.44 -8.50 2.57 -529.06 -1.36 -9.86 16 6 C 0.19 4.89 10.86 180.26 1.96 6.85 16 7 N -0.46 -16.88 9.04 -197.77 -1.79 -18.67 16 8 C -0.59 -19.70 5.96 83.52 0.50 -19.20 16 9 S 2.75 102.52 5.77 -56.49 -0.33 102.20 16 10 O -0.97 -33.82 17.84 -128.00 -2.28 -36.10 16 11 O -0.99 -47.58 17.74 -128.00 -2.27 -49.85 16 12 N -1.01 -37.13 5.93 -51.64 -0.31 -37.44 16 13 C -0.04 -1.88 6.41 37.73 0.24 -1.64 16 14 C -0.06 -3.22 11.30 85.42 0.96 -2.25 16 15 N -0.30 -17.93 10.40 -56.45 -0.59 -18.52 16 16 N -0.17 -9.74 3.74 -189.98 -0.71 -10.45 16 17 C -0.36 -19.46 10.25 84.01 0.86 -18.60 16 18 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 19 C 0.00 -0.22 5.50 84.95 0.47 0.25 16 20 N -0.82 -47.47 11.81 21.66 0.26 -47.21 16 21 Si 1.02 39.33 29.55 68.60 2.03 41.36 16 22 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 23 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 C -0.07 -3.36 11.50 83.35 0.96 -2.40 16 26 C 0.09 2.04 11.31 83.09 0.94 2.98 16 27 H 0.04 0.64 6.50 -2.39 -0.02 0.62 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.24 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.43 12.25 8.96 -96.75 -0.87 11.39 16 38 H 0.18 8.62 4.81 -2.91 -0.01 8.61 16 39 H 0.28 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.18 7.36 8.06 -2.91 -0.02 7.34 16 41 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -87.45 361.30 1.49 -85.95 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.21 Total: 33.51 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 8.64 Total: -34.92 kcal Atomic # 7 Polarization: -137.65 SS G_CDS: -4.50 Total: -142.15 kcal Atomic # 8 Polarization: -81.40 SS G_CDS: -4.55 Total: -85.96 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 16 Polarization: 102.52 SS G_CDS: -0.33 Total: 102.20 kcal Total: -87.45 1.49 -85.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749864953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.707 kcal (2) G-P(sol) polarization free energy of solvation -87.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds