Wall clock time and date at job start Tue Mar 31 2020 23:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.46736 * 2 1 4 4 O 1.45705 * 110.80659 * 237.38831 * 2 1 3 5 5 C 1.33775 * 109.47563 * 241.56908 * 4 2 1 6 6 O 1.21513 * 123.07329 * 179.89652 * 5 4 2 7 7 N 1.34009 * 113.85453 * 359.62776 * 5 4 2 8 8 C 1.47094 * 108.88192 * 0.22853 * 7 5 4 9 9 H 1.08998 * 110.56221 * 118.56968 * 8 7 5 10 10 C 1.50694 * 110.56715 * 241.27976 * 8 7 5 11 11 O 1.20827 * 119.99776 * 18.54914 * 10 8 7 12 12 O 1.34225 * 120.00320 * 198.54453 * 10 8 7 13 13 C 1.45198 * 117.00346 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47213 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00247 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00101 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00060 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47032 * 90.00463 * 17 16 14 19 19 H 1.07997 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00217 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00287 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47050 * 59.99978 * 22 20 18 24 24 H 1.48496 * 109.47428 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47058 * 300.00047 * 22 20 18 26 26 C 1.46506 * 119.99854 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47303 * 89.99507 * 26 16 14 28 28 C 1.47193 * 109.47344 * 179.97438 * 27 26 16 29 29 N 8.94763 * 133.77485 * 42.78182 * 2 1 3 30 30 H 1.09001 * 109.47057 * 297.36846 * 1 2 3 31 31 H 1.09000 * 109.47466 * 57.36808 * 1 2 3 32 32 H 1.09000 * 109.47435 * 177.37019 * 1 2 3 33 33 H 0.97004 * 125.55364 * 180.21054 * 7 5 4 34 34 H 1.09008 * 109.47033 * 300.00570 * 13 12 10 35 35 H 1.08998 * 109.47195 * 59.99835 * 13 12 10 36 36 H 1.09006 * 109.47315 * 210.00029 * 17 16 14 37 37 H 1.09001 * 109.47562 * 330.00435 * 17 16 14 38 38 H 0.97000 * 120.00073 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.46710 * 209.99837 * 26 16 14 40 40 H 1.09003 * 109.46618 * 330.00093 * 26 16 14 41 41 H 1.08997 * 109.47144 * 300.00526 * 27 26 16 42 42 H 1.09005 * 109.46865 * 59.99922 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0475 -0.7341 -1.1473 5 6 2.7673 -1.7780 -0.7211 6 8 3.3124 -2.5597 -1.4750 7 7 2.8368 -1.8798 0.6133 8 6 2.0702 -0.7782 1.2153 9 1 1.2486 -1.1674 1.8166 10 6 2.9681 0.0967 2.0515 11 8 4.1654 0.0595 1.8934 12 8 2.4379 0.9173 2.9719 13 6 3.3626 1.7314 3.7402 14 6 2.5916 2.5815 4.7168 15 8 1.3817 2.5089 4.7606 16 7 3.2464 3.4226 5.5416 17 6 2.4968 4.2495 6.4905 18 6 2.3364 3.5030 7.7897 19 1 2.7510 2.5116 7.8976 20 6 1.6604 4.0856 8.8407 21 7 1.1551 5.2927 8.7092 22 14 1.4609 3.1600 10.4509 23 1 2.8001 2.8506 11.0132 24 1 0.7012 3.9981 11.4129 25 1 0.7224 1.8950 10.2065 26 6 4.7079 3.5108 5.4883 27 6 5.1175 4.5875 4.4815 28 6 6.5858 4.6765 4.4284 29 7 7.7202 4.7418 4.3882 30 1 -0.3633 0.4724 0.9126 31 1 -0.3634 0.5541 -0.8654 32 1 -0.3634 -1.0266 -0.0472 33 1 3.3146 -2.5679 1.1024 34 1 4.0496 1.0842 4.2857 35 1 3.9278 2.3743 3.0655 36 1 3.0383 5.1784 6.6697 37 1 1.5137 4.4758 6.0777 38 1 0.6798 5.7028 9.4487 39 1 5.0923 3.7704 6.4747 40 1 5.1187 2.5495 5.1795 41 1 4.7329 4.3279 3.4952 42 1 4.7065 5.5488 4.7902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786075686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:42 Heat of formation + Delta-G solvation = -152.938472 kcal Electronic energy + Delta-G solvation = -29152.902809 eV Core-core repulsion = 24713.528019 eV Total energy + Delta-G solvation = -4439.374790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.42406 -40.71055 -39.33179 -37.73378 -37.08077 -36.74354 -35.40819 -35.24035 -33.04198 -32.59102 -31.02576 -29.82672 -27.98237 -26.65098 -24.21956 -23.73757 -22.96310 -22.78367 -21.62812 -19.16704 -18.75723 -18.35005 -17.85371 -17.54507 -17.16154 -16.83498 -16.57078 -16.45741 -16.02660 -15.48514 -15.26497 -15.06256 -14.87288 -14.77220 -14.36292 -13.92024 -13.89368 -13.63509 -13.42155 -13.02378 -12.89024 -12.60224 -12.57401 -12.38659 -12.30931 -12.18262 -11.88863 -11.44103 -11.40024 -11.21617 -11.14015 -11.10520 -11.07597 -10.89489 -10.72831 -10.31112 -10.02391 -9.87450 -9.31222 -8.57977 -8.09492 -6.20283 -4.25826 1.49512 1.66955 2.18972 2.38505 2.61530 2.72446 2.92967 2.97584 3.22994 3.28440 3.29806 3.35332 3.42077 3.90407 4.02225 4.14236 4.31402 4.34588 4.57265 4.62112 4.69881 4.76634 4.84583 4.98483 5.01124 5.15485 5.18103 5.21252 5.30306 5.58871 5.65645 5.85630 5.90944 6.22177 6.69408 6.71740 7.13766 7.15472 7.24877 7.48824 7.60260 7.74543 7.96119 8.02678 8.56102 8.78741 9.40252 10.87825 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.002801 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.013275 B = 9992.798558 C =11536.051566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.123 0.877 4 O -0.318 6.318 5 C 0.653 3.347 6 O -0.513 6.513 7 N -0.713 5.713 8 C 0.109 3.891 9 H 0.146 0.854 10 C 0.450 3.550 11 O -0.486 6.486 12 O -0.320 6.320 13 C 0.044 3.956 14 C 0.509 3.491 15 O -0.508 6.508 16 N -0.590 5.590 17 C 0.247 3.753 18 C -0.534 4.534 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.111 3.889 27 C -0.050 4.050 28 C 0.214 3.786 29 N -0.440 5.440 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.442 0.558 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -7.597 -13.487 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.141 0.859 4 O -0.228 6.228 5 C 0.406 3.594 6 O -0.397 6.397 7 N -0.387 5.387 8 C 0.000 4.000 9 H 0.163 0.837 10 C 0.289 3.711 11 O -0.373 6.373 12 O -0.234 6.234 13 C -0.033 4.033 14 C 0.294 3.706 15 O -0.382 6.382 16 N -0.323 5.323 17 C 0.129 3.871 18 C -0.573 4.573 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.015 4.015 27 C -0.092 4.092 28 C -0.104 4.104 29 N -0.117 5.117 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.286 0.714 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.296 -7.567 -14.169 16.115 hybrid contribution 0.021 -0.644 1.542 1.671 sum 1.317 -8.211 -12.626 15.119 Atomic orbital electron populations 1.22192 0.89912 1.04528 1.05357 1.23808 0.97588 0.96412 0.79326 0.85902 1.87375 1.63909 1.38906 1.32598 1.18395 0.78061 0.80739 0.82236 1.91108 1.48500 1.42396 1.57693 1.45771 1.56652 1.29982 1.06246 1.21963 0.94188 0.88048 0.95773 0.83658 1.23601 0.88483 0.79611 0.79414 1.90752 1.16051 1.64499 1.65953 1.86539 1.40418 1.50088 1.46328 1.23123 0.91573 0.94291 0.94287 1.19653 0.88197 0.81189 0.81593 1.90750 1.13404 1.65414 1.68679 1.48173 1.05532 1.41403 1.37187 1.19438 0.92468 0.89190 0.86044 1.21346 1.36389 1.02499 0.97078 0.92326 1.24908 0.95011 0.94953 0.98950 1.69902 1.36365 1.14131 1.32640 0.86556 0.78297 0.79834 0.82750 1.20206 1.21135 1.20116 1.21423 0.82286 0.97361 1.00423 1.19873 0.81940 1.04377 1.02978 1.29062 0.95042 0.93182 0.93133 1.81269 1.12890 1.08788 1.08767 0.88340 0.89729 0.90792 0.71383 0.88134 0.88353 0.94244 0.93267 0.92460 0.88067 0.90659 0.87702 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.47 37.16 0.35 -0.38 16 2 C 0.08 0.57 4.13 -26.16 -0.11 0.46 16 3 H 0.12 0.72 7.73 -51.93 -0.40 0.32 16 4 O -0.32 -3.22 10.81 -37.84 -0.41 -3.62 16 5 C 0.65 7.47 9.16 53.71 0.49 7.96 16 6 O -0.51 -7.82 18.04 -19.12 -0.34 -8.17 16 7 N -0.71 -5.88 5.66 -59.36 -0.34 -6.22 16 8 C 0.11 0.76 3.92 -68.19 -0.27 0.49 16 9 H 0.15 0.62 7.73 -51.93 -0.40 0.22 16 10 C 0.45 4.42 7.07 36.00 0.25 4.67 16 11 O -0.49 -5.97 16.35 -18.75 -0.31 -6.28 16 12 O -0.32 -3.66 9.75 -45.89 -0.45 -4.11 16 13 C 0.04 0.52 4.50 36.00 0.16 0.68 16 14 C 0.51 8.26 7.75 -10.99 -0.09 8.18 16 15 O -0.51 -10.58 16.08 -14.10 -0.23 -10.81 16 16 N -0.59 -9.54 2.46 -175.06 -0.43 -9.96 16 17 C 0.25 5.33 5.16 -5.20 -0.03 5.31 16 18 C -0.53 -13.33 9.39 -34.44 -0.32 -13.65 16 19 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 22 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 C 0.11 1.29 5.17 -4.04 -0.02 1.26 16 27 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 28 C 0.21 2.41 15.44 -20.73 -0.32 2.09 16 29 N -0.44 -6.25 18.54 42.19 0.78 -5.47 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.44 2.97 8.96 -40.82 -0.37 2.60 16 34 H 0.10 1.05 7.39 -51.92 -0.38 0.66 16 35 H 0.10 0.89 7.18 -51.93 -0.37 0.52 16 36 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 37 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.08 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.10 0.73 7.22 -51.93 -0.38 0.35 16 42 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -36.01 379.38 -5.55 -41.55 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.09 Total: -2.38 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -0.17 Total: 18.02 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.75 Total: -45.09 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.73 Total: -32.98 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.01 -5.55 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.385 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds