Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.46736 * 2 1 4 4 O 1.45705 * 110.80659 * 237.38831 * 2 1 3 5 5 C 1.33775 * 109.47563 * 241.56908 * 4 2 1 6 6 O 1.21513 * 123.07329 * 179.89652 * 5 4 2 7 7 N 1.34009 * 113.85453 * 359.62776 * 5 4 2 8 8 C 1.47094 * 108.88192 * 0.22853 * 7 5 4 9 9 H 1.08998 * 110.56221 * 118.56968 * 8 7 5 10 10 C 1.50694 * 110.56715 * 241.27976 * 8 7 5 11 11 O 1.20827 * 119.99776 * 18.54914 * 10 8 7 12 12 O 1.34225 * 120.00320 * 198.54453 * 10 8 7 13 13 C 1.45198 * 117.00346 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47213 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00247 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00101 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00060 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47032 * 90.00463 * 17 16 14 19 19 H 1.07997 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00217 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00287 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47050 * 59.99978 * 22 20 18 24 24 H 1.48496 * 109.47428 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47058 * 300.00047 * 22 20 18 26 26 C 1.46506 * 119.99854 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47303 * 89.99507 * 26 16 14 28 28 C 1.47193 * 109.47344 * 179.97438 * 27 26 16 29 29 N 8.94763 * 133.77485 * 42.78182 * 2 1 3 30 30 H 1.09001 * 109.47057 * 297.36846 * 1 2 3 31 31 H 1.09000 * 109.47466 * 57.36808 * 1 2 3 32 32 H 1.09000 * 109.47435 * 177.37019 * 1 2 3 33 33 H 0.97004 * 125.55364 * 180.21054 * 7 5 4 34 34 H 1.09008 * 109.47033 * 300.00570 * 13 12 10 35 35 H 1.08998 * 109.47195 * 59.99835 * 13 12 10 36 36 H 1.09006 * 109.47315 * 210.00029 * 17 16 14 37 37 H 1.09001 * 109.47562 * 330.00435 * 17 16 14 38 38 H 0.97000 * 120.00073 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.46710 * 209.99837 * 26 16 14 40 40 H 1.09003 * 109.46618 * 330.00093 * 26 16 14 41 41 H 1.08997 * 109.47144 * 300.00526 * 27 26 16 42 42 H 1.09005 * 109.46865 * 59.99922 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0475 -0.7341 -1.1473 5 6 2.7673 -1.7780 -0.7211 6 8 3.3124 -2.5597 -1.4750 7 7 2.8368 -1.8798 0.6133 8 6 2.0702 -0.7782 1.2153 9 1 1.2486 -1.1674 1.8166 10 6 2.9681 0.0967 2.0515 11 8 4.1654 0.0595 1.8934 12 8 2.4379 0.9173 2.9719 13 6 3.3626 1.7314 3.7402 14 6 2.5916 2.5815 4.7168 15 8 1.3817 2.5089 4.7606 16 7 3.2464 3.4226 5.5416 17 6 2.4968 4.2495 6.4905 18 6 2.3364 3.5030 7.7897 19 1 2.7510 2.5116 7.8976 20 6 1.6604 4.0856 8.8407 21 7 1.1551 5.2927 8.7092 22 14 1.4609 3.1600 10.4509 23 1 2.8001 2.8506 11.0132 24 1 0.7012 3.9981 11.4129 25 1 0.7224 1.8950 10.2065 26 6 4.7079 3.5108 5.4883 27 6 5.1175 4.5875 4.4815 28 6 6.5858 4.6765 4.4284 29 7 7.7202 4.7418 4.3882 30 1 -0.3633 0.4724 0.9126 31 1 -0.3634 0.5541 -0.8654 32 1 -0.3634 -1.0266 -0.0472 33 1 3.3146 -2.5679 1.1024 34 1 4.0496 1.0842 4.2857 35 1 3.9278 2.3743 3.0655 36 1 3.0383 5.1784 6.6697 37 1 1.5137 4.4758 6.0777 38 1 0.6798 5.7028 9.4487 39 1 5.0923 3.7704 6.4747 40 1 5.1187 2.5495 5.1795 41 1 4.7329 4.3279 3.4952 42 1 4.7065 5.5488 4.7902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786075686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = -178.539359 kcal Electronic energy + Delta-G solvation = -29154.012947 eV Core-core repulsion = 24713.528019 eV Total energy + Delta-G solvation = -4440.484928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16414 -41.62075 -40.54843 -38.63876 -38.07012 -37.68604 -36.68609 -35.97000 -34.85842 -33.17418 -32.21251 -30.92183 -29.01782 -27.87602 -25.35514 -24.73138 -24.14010 -23.54257 -22.44624 -20.33976 -19.58952 -19.10026 -18.87994 -18.41762 -18.33202 -18.00182 -17.67664 -17.57051 -17.14377 -16.59641 -16.25822 -15.96743 -15.88456 -15.70645 -15.65419 -14.88250 -14.70184 -14.56536 -14.38643 -14.10307 -13.88154 -13.73033 -13.58746 -13.55623 -13.17695 -12.99678 -12.94044 -12.80200 -12.72090 -12.49559 -12.17635 -12.14658 -12.07733 -12.05736 -11.83760 -11.77153 -11.66890 -10.79170 -10.63463 -10.55305 -9.54984 -8.16060 -6.27618 0.72485 0.85901 1.44041 1.46072 1.47423 1.51655 1.53790 1.60843 1.79755 1.83236 2.20998 2.38546 2.47005 2.79681 3.02172 3.16963 3.30341 3.53057 3.55710 3.79347 3.92076 4.00047 4.05417 4.10555 4.15134 4.21586 4.53929 4.81956 4.83589 4.86740 5.00398 5.03507 5.15396 5.28589 5.36050 5.55116 5.58399 5.85428 5.96448 6.13681 6.35517 6.59067 6.64639 6.80999 6.81759 7.28123 7.45048 8.90528 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.002801 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.013275 B = 9992.798558 C =11536.051566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.081 3.919 3 H 0.133 0.867 4 O -0.330 6.330 5 C 0.652 3.348 6 O -0.561 6.561 7 N -0.700 5.700 8 C 0.114 3.886 9 H 0.180 0.820 10 C 0.458 3.542 11 O -0.510 6.510 12 O -0.329 6.329 13 C 0.051 3.949 14 C 0.507 3.493 15 O -0.562 6.562 16 N -0.590 5.590 17 C 0.261 3.739 18 C -0.542 4.542 19 H 0.056 0.944 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.107 3.893 27 C -0.040 4.040 28 C 0.244 3.756 29 N -0.491 5.491 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.449 0.551 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -8.325 -13.633 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.150 0.850 4 O -0.240 6.240 5 C 0.406 3.594 6 O -0.448 6.448 7 N -0.374 5.374 8 C 0.006 3.994 9 H 0.197 0.803 10 C 0.299 3.701 11 O -0.398 6.398 12 O -0.243 6.243 13 C -0.025 4.025 14 C 0.294 3.706 15 O -0.441 6.441 16 N -0.322 5.322 17 C 0.140 3.860 18 C -0.581 4.581 19 H 0.074 0.926 20 C -0.185 4.185 21 N -0.564 5.564 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.203 1.203 26 C -0.017 4.017 27 C -0.080 4.080 28 C -0.073 4.073 29 N -0.169 5.169 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.294 0.706 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.154 0.846 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.560 -8.290 -14.298 16.602 hybrid contribution -0.086 -0.379 1.591 1.638 sum 1.474 -8.669 -12.708 15.454 Atomic orbital electron populations 1.22219 0.88013 1.05191 1.06131 1.24140 0.98970 0.96332 0.77972 0.84985 1.87356 1.63709 1.38645 1.34253 1.18493 0.77716 0.80515 0.82712 1.91066 1.50523 1.44224 1.58996 1.45719 1.56197 1.30134 1.05308 1.22231 0.94058 0.87266 0.95856 0.80284 1.23980 0.88409 0.78978 0.78728 1.90754 1.17206 1.65185 1.66618 1.86539 1.40712 1.50392 1.46675 1.23043 0.90723 0.94577 0.94169 1.20384 0.87796 0.80763 0.81628 1.90725 1.15967 1.67021 1.70347 1.47983 1.07227 1.40756 1.36195 1.18890 0.91518 0.89767 0.85807 1.21728 1.35551 1.02430 0.98383 0.92604 1.25665 0.95078 0.95711 1.02080 1.70004 1.37458 1.15475 1.33460 0.85665 0.78549 0.78424 0.79365 1.19055 1.21053 1.20306 1.21627 0.79271 0.99827 1.00996 1.19872 0.80425 1.03884 1.03868 1.29232 0.95010 0.91615 0.91491 1.81313 1.14483 1.10485 1.10604 0.87214 0.89281 0.90195 0.70566 0.86282 0.85075 0.94187 0.97053 0.92571 0.89062 0.87702 0.84562 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.47 71.98 0.68 -0.33 16 2 C 0.08 0.89 4.13 30.96 0.13 1.02 16 3 H 0.13 1.22 7.73 -2.39 -0.02 1.20 16 4 O -0.33 -6.25 10.81 -47.35 -0.51 -6.77 16 5 C 0.65 14.38 9.16 129.91 1.19 15.57 16 6 O -0.56 -17.21 18.04 19.64 0.35 -16.86 16 7 N -0.70 -10.30 5.66 -573.41 -3.24 -13.54 16 8 C 0.11 1.28 3.92 44.50 0.17 1.45 16 9 H 0.18 0.87 7.73 -2.39 -0.02 0.85 16 10 C 0.46 7.67 7.07 71.23 0.50 8.17 16 11 O -0.51 -11.08 16.35 21.96 0.36 -10.72 16 12 O -0.33 -6.57 9.75 -45.01 -0.44 -7.01 16 13 C 0.05 1.03 4.50 71.24 0.32 1.35 16 14 C 0.51 15.65 7.75 87.66 0.68 16.33 16 15 O -0.56 -23.33 16.08 15.76 0.25 -23.08 16 16 N -0.59 -18.25 2.46 -826.14 -2.03 -20.28 16 17 C 0.26 11.34 5.16 85.63 0.44 11.78 16 18 C -0.54 -27.07 9.39 25.60 0.24 -26.83 16 19 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 20 C 0.01 0.74 5.46 84.65 0.46 1.20 16 21 N -0.92 -50.74 13.29 21.45 0.28 -50.46 16 22 Si 0.95 41.21 29.54 68.60 2.03 43.24 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.11 2.20 5.17 86.38 0.45 2.65 16 27 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 28 C 0.24 4.89 15.44 89.43 1.38 6.28 16 29 N -0.49 -13.19 18.54 20.02 0.37 -12.82 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.45 5.28 8.96 -92.71 -0.83 4.44 16 34 H 0.12 2.00 7.39 -2.38 -0.02 1.98 16 35 H 0.13 1.77 7.18 -2.39 -0.02 1.75 16 36 H 0.04 1.72 8.07 -2.38 -0.02 1.70 16 37 H 0.01 0.58 7.42 -2.39 -0.02 0.56 16 38 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.10 1.57 6.44 -2.39 -0.02 1.55 16 41 H 0.14 1.28 7.22 -2.39 -0.02 1.26 16 42 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -80.98 379.38 4.51 -76.47 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.26 Total: 3.61 kcal Atomic # 6 Polarization: 31.39 SS G_CDS: 6.82 Total: 38.21 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -4.62 Total: -97.10 kcal Atomic # 8 Polarization: -64.45 SS G_CDS: 0.02 Total: -64.43 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -80.98 4.51 -76.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.069 kcal (2) G-P(sol) polarization free energy of solvation -80.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds