Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.46902 * 2 1 4 4 O 1.45702 * 110.52340 * 122.78492 * 2 1 3 5 5 C 1.33768 * 109.47853 * 118.63164 * 4 2 1 6 6 O 1.21515 * 123.06994 * 179.97438 * 5 4 2 7 7 N 1.34001 * 113.85667 * 359.97438 * 5 4 2 8 8 C 1.47093 * 108.88138 * 0.02562 * 7 5 4 9 9 H 1.09001 * 110.69031 * 241.36216 * 8 7 5 10 10 C 1.50706 * 110.56424 * 118.57245 * 8 7 5 11 11 O 1.20824 * 120.00104 * 345.63890 * 10 8 7 12 12 O 1.34230 * 119.99717 * 165.64446 * 10 8 7 13 13 C 1.45199 * 116.99614 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46928 * 179.97438 * 13 12 10 15 15 O 1.21278 * 119.99985 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00271 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47398 * 89.99557 * 17 16 14 19 19 H 1.08003 * 120.00015 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00473 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47398 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47236 * 120.00416 * 22 20 18 25 25 H 1.48507 * 109.47103 * 240.00011 * 22 20 18 26 26 C 1.46505 * 119.99832 * 359.97438 * 16 14 13 27 27 C 1.52994 * 109.47022 * 90.00138 * 26 16 14 28 28 C 1.47206 * 109.47290 * 179.97438 * 27 26 16 29 29 N 9.40460 * 132.25362 * 292.36027 * 2 1 3 30 30 H 1.08996 * 109.46809 * 182.63297 * 1 2 3 31 31 H 1.09001 * 109.46802 * 302.62849 * 1 2 3 32 32 H 1.09003 * 109.47157 * 62.62612 * 1 2 3 33 33 H 0.97003 * 125.55800 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47177 * 299.99820 * 13 12 10 35 35 H 1.09001 * 109.47399 * 59.99991 * 13 12 10 36 36 H 1.09000 * 109.47082 * 209.99555 * 17 16 14 37 37 H 1.09004 * 109.46754 * 329.99821 * 17 16 14 38 38 H 0.96999 * 120.00725 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.47024 * 210.00620 * 26 16 14 40 40 H 1.09000 * 109.46875 * 330.00379 * 26 16 14 41 41 H 1.09005 * 109.47443 * 299.99879 * 27 26 16 42 42 H 1.09000 * 109.47099 * 60.00377 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 8 2.0408 -0.7389 1.1472 5 6 2.7631 -1.7810 0.7209 6 8 3.3057 -2.5644 1.4748 7 7 2.8337 -1.8819 -0.6134 8 6 2.0699 -0.7783 -1.2154 9 1 1.2480 -1.1631 -1.8192 10 6 2.9712 0.0973 -2.0473 11 8 4.1710 0.0043 -1.9396 12 8 2.4410 0.9806 -2.9077 13 6 3.3691 1.7913 -3.6757 14 6 2.5976 2.7165 -4.5811 15 8 1.3851 2.6945 -4.5797 16 7 3.2552 3.5677 -5.3933 17 6 2.5053 4.4675 -6.2731 18 6 2.2329 5.7628 -5.5527 19 1 2.5838 5.9021 -4.5408 20 6 1.5359 6.7702 -6.1853 21 7 1.1081 6.6005 -7.4173 22 14 1.1990 8.3761 -5.2926 23 1 1.7807 8.3151 -3.9277 24 1 1.8150 9.4989 -6.0441 25 1 -0.2673 8.5906 -5.1960 26 6 4.7200 3.5939 -5.3954 27 6 5.2463 2.6007 -6.4334 28 6 6.7181 2.6274 -6.4360 29 7 7.8538 2.6482 -6.4377 30 1 -0.3633 -1.0266 0.0472 31 1 -0.3633 0.5541 0.8655 32 1 -0.3633 0.4725 -0.9126 33 1 3.3106 -2.5705 -1.1026 34 1 3.9867 2.3787 -2.9962 35 1 4.0063 1.1429 -4.2771 36 1 3.0892 4.6673 -7.1715 37 1 1.5602 4.0003 -6.5502 38 1 0.6174 7.3091 -7.8623 39 1 5.0651 4.5972 -5.6448 40 1 5.0897 3.3175 -4.4080 41 1 4.9012 1.5973 -6.1839 42 1 4.8766 2.8771 -7.4208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786075687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -152.823308 kcal Electronic energy + Delta-G solvation = -29173.967954 eV Core-core repulsion = 24734.598158 eV Total energy + Delta-G solvation = -4439.369796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41567 -40.70812 -39.33235 -37.72406 -37.09476 -36.75478 -35.41639 -35.22956 -33.04538 -32.57037 -31.02956 -29.82169 -27.97635 -26.64870 -24.22059 -23.71104 -22.95776 -22.78191 -21.63008 -19.17207 -18.72643 -18.34634 -17.90169 -17.49148 -17.17539 -16.85118 -16.55984 -16.43548 -16.05198 -15.44705 -15.27231 -15.05310 -14.86086 -14.78691 -14.36030 -13.97296 -13.86779 -13.58410 -13.37262 -13.11329 -12.83693 -12.58802 -12.57549 -12.42685 -12.24663 -12.19649 -11.89911 -11.43870 -11.39542 -11.21870 -11.13296 -11.08317 -11.05661 -10.89223 -10.75763 -10.31031 -10.02676 -9.83622 -9.31304 -8.58855 -8.09232 -6.20584 -4.25964 1.51456 1.66159 2.19985 2.39129 2.61770 2.72622 2.94152 2.97134 3.21014 3.29731 3.31394 3.36381 3.42000 3.90506 4.03337 4.14943 4.31692 4.36986 4.58638 4.62139 4.70561 4.77164 4.84611 4.98454 5.00972 5.15455 5.21164 5.24551 5.30120 5.62172 5.65454 5.85686 5.90916 6.22780 6.69449 6.72664 7.13722 7.15520 7.25066 7.48394 7.60942 7.74656 7.96050 8.02507 8.56084 8.79228 9.40338 10.87605 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002959 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.304980 B = 9461.385863 C =11473.083384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.318 6.318 5 C 0.653 3.347 6 O -0.514 6.514 7 N -0.712 5.712 8 C 0.109 3.891 9 H 0.147 0.853 10 C 0.450 3.550 11 O -0.487 6.487 12 O -0.320 6.320 13 C 0.044 3.956 14 C 0.510 3.490 15 O -0.508 6.508 16 N -0.590 5.590 17 C 0.246 3.754 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.111 3.889 27 C -0.050 4.050 28 C 0.214 3.786 29 N -0.440 5.440 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.442 0.558 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 -13.645 7.527 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.142 0.858 4 O -0.228 6.228 5 C 0.405 3.595 6 O -0.397 6.397 7 N -0.386 5.386 8 C 0.001 3.999 9 H 0.164 0.836 10 C 0.289 3.711 11 O -0.373 6.373 12 O -0.234 6.234 13 C -0.033 4.033 14 C 0.294 3.706 15 O -0.383 6.383 16 N -0.323 5.323 17 C 0.128 3.872 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.015 4.015 27 C -0.092 4.092 28 C -0.104 4.104 29 N -0.117 5.117 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.286 0.714 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.611 -13.726 8.113 16.025 hybrid contribution -0.065 0.773 -0.171 0.795 sum 1.546 -12.953 7.942 15.272 Atomic orbital electron populations 1.22192 0.89916 1.04421 1.05441 1.23836 0.97706 0.96420 0.79285 0.85766 1.87377 1.63884 1.38876 1.32647 1.18403 0.78058 0.80771 0.82236 1.91107 1.48652 1.42275 1.57689 1.45759 1.56777 1.29851 1.06243 1.21957 0.94120 0.87933 0.95899 0.83604 1.23620 0.88565 0.79788 0.79160 1.90749 1.15921 1.66118 1.64494 1.86539 1.40218 1.47112 1.49532 1.23124 0.91459 0.93743 0.94949 1.19651 0.88228 0.81325 0.81414 1.90748 1.13183 1.68180 1.66151 1.48172 1.05135 1.37801 1.41183 1.19449 0.92332 0.87317 0.88116 1.21421 1.36326 0.98842 1.00577 0.92198 1.24909 0.95198 0.98857 0.94902 1.69914 1.37555 1.33807 1.11755 0.86447 0.78217 0.83024 0.79768 1.19755 1.20932 1.20802 1.21420 0.81753 1.00622 0.97704 1.19875 0.81553 1.03044 1.04700 1.29019 0.95034 0.93164 0.93181 1.81221 1.13022 1.08704 1.08758 0.90844 0.89710 0.88328 0.71403 0.88133 0.88354 0.94248 0.93262 0.92576 0.88060 0.90649 0.87721 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.45 37.16 0.35 -0.46 16 2 C 0.08 0.60 4.14 -26.16 -0.11 0.49 16 3 H 0.12 0.84 7.72 -51.93 -0.40 0.44 16 4 O -0.32 -3.32 10.80 -37.82 -0.41 -3.73 16 5 C 0.65 7.54 9.16 53.71 0.49 8.03 16 6 O -0.51 -7.87 18.04 -19.12 -0.34 -8.22 16 7 N -0.71 -5.82 5.63 -59.36 -0.33 -6.15 16 8 C 0.11 0.76 3.93 -68.19 -0.27 0.50 16 9 H 0.15 0.57 7.73 -51.93 -0.40 0.17 16 10 C 0.45 4.41 7.08 36.01 0.26 4.66 16 11 O -0.49 -5.96 16.31 -18.75 -0.31 -6.26 16 12 O -0.32 -3.65 9.76 -45.90 -0.45 -4.10 16 13 C 0.04 0.52 4.50 36.01 0.16 0.68 16 14 C 0.51 8.25 7.75 -10.98 -0.09 8.17 16 15 O -0.51 -10.55 16.08 -14.10 -0.23 -10.78 16 16 N -0.59 -9.53 2.46 -175.06 -0.43 -9.96 16 17 C 0.25 5.31 5.16 -5.20 -0.03 5.28 16 18 C -0.53 -13.27 9.39 -34.44 -0.32 -13.59 16 19 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 22 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.11 1.28 5.17 -4.04 -0.02 1.26 16 27 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 28 C 0.21 2.40 15.43 -20.76 -0.32 2.08 16 29 N -0.44 -6.22 18.54 42.15 0.78 -5.43 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.44 2.86 8.96 -40.82 -0.37 2.50 16 34 H 0.10 1.05 7.39 -51.93 -0.38 0.66 16 35 H 0.10 0.89 7.17 -51.93 -0.37 0.52 16 36 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.08 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.10 0.72 7.22 -51.93 -0.37 0.35 16 42 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -35.95 379.29 -5.55 -41.50 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.09 Total: -2.35 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: -0.17 Total: 18.04 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.75 Total: -44.96 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.73 Total: -33.09 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.95 -5.55 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.323 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds